Experiment: No vitamins t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24155 and BPHYT_RS24160 are separated by 224 nucleotides BPHYT_RS24160 and BPHYT_RS24165 are separated by 51 nucleotides BPHYT_RS24165 and BPHYT_RS24170 overlap by 4 nucleotides
BPHYT_RS24155: BPHYT_RS24155 - 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) <small>(from data)</small>, at 987,186 to 988,103
_RS24155
BPHYT_RS24160: BPHYT_RS24160 - D-galactarate dehydratase, at 988,328 to 989,917
_RS24160
BPHYT_RS24165: BPHYT_RS24165 - NAD-dependent dehydratase, at 989,969 to 990,811
_RS24165
BPHYT_RS24170: BPHYT_RS24170 - gluconolactonase, at 990,808 to 991,737
_RS24170
Position (kb) 988
989
990 Strain fitness (log2 ratio) -2
-1
0
1
2 at 987.419 kb on - strand, within BPHYT_RS24155 at 987.491 kb on - strand, within BPHYT_RS24155 at 987.491 kb on - strand, within BPHYT_RS24155 at 987.491 kb on - strand, within BPHYT_RS24155 at 987.654 kb on - strand, within BPHYT_RS24155 at 987.654 kb on - strand, within BPHYT_RS24155 at 987.760 kb on + strand, within BPHYT_RS24155 at 987.761 kb on - strand, within BPHYT_RS24155 at 987.908 kb on - strand, within BPHYT_RS24155 at 987.974 kb on - strand at 988.003 kb on + strand, within BPHYT_RS24155 at 988.003 kb on + strand, within BPHYT_RS24155 at 988.004 kb on - strand, within BPHYT_RS24155 at 988.004 kb on - strand, within BPHYT_RS24155 at 988.004 kb on - strand, within BPHYT_RS24155 at 988.007 kb on + strand, within BPHYT_RS24155 at 988.106 kb on + strand at 988.106 kb on + strand at 988.107 kb on - strand at 988.107 kb on - strand at 988.107 kb on - strand at 988.107 kb on - strand at 988.111 kb on - strand at 988.219 kb on + strand at 988.219 kb on + strand at 988.416 kb on + strand at 988.509 kb on - strand, within BPHYT_RS24160 at 988.510 kb on + strand, within BPHYT_RS24160 at 988.657 kb on + strand, within BPHYT_RS24160 at 988.657 kb on + strand, within BPHYT_RS24160 at 988.658 kb on - strand, within BPHYT_RS24160 at 988.769 kb on - strand, within BPHYT_RS24160 at 989.399 kb on + strand, within BPHYT_RS24160 at 989.409 kb on - strand, within BPHYT_RS24160 at 989.676 kb on - strand, within BPHYT_RS24160 at 989.962 kb on + strand at 989.963 kb on - strand at 989.963 kb on - strand at 989.963 kb on - strand at 990.278 kb on + strand, within BPHYT_RS24165 at 990.449 kb on + strand, within BPHYT_RS24165 at 990.452 kb on + strand, within BPHYT_RS24165 at 990.615 kb on - strand, within BPHYT_RS24165
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins t1 remove 987,419 - BPHYT_RS24155 0.25 -1.6 987,491 - BPHYT_RS24155 0.33 -0.2 987,491 - BPHYT_RS24155 0.33 +0.7 987,491 - BPHYT_RS24155 0.33 +0.3 987,654 - BPHYT_RS24155 0.51 -0.3 987,654 - BPHYT_RS24155 0.51 +0.2 987,760 + BPHYT_RS24155 0.63 +2.0 987,761 - BPHYT_RS24155 0.63 -0.1 987,908 - BPHYT_RS24155 0.79 +1.8 987,974 - +1.4 988,003 + BPHYT_RS24155 0.89 -0.6 988,003 + BPHYT_RS24155 0.89 +0.1 988,004 - BPHYT_RS24155 0.89 -0.6 988,004 - BPHYT_RS24155 0.89 -0.5 988,004 - BPHYT_RS24155 0.89 +0.4 988,007 + BPHYT_RS24155 0.89 -0.9 988,106 + -2.5 988,106 + -0.9 988,107 - +0.2 988,107 - +1.0 988,107 - +0.1 988,107 - -0.7 988,111 - -0.3 988,219 + -0.2 988,219 + -0.0 988,416 + +0.5 988,509 - BPHYT_RS24160 0.11 +0.3 988,510 + BPHYT_RS24160 0.11 -0.5 988,657 + BPHYT_RS24160 0.21 -0.2 988,657 + BPHYT_RS24160 0.21 -0.5 988,658 - BPHYT_RS24160 0.21 +0.4 988,769 - BPHYT_RS24160 0.28 -0.1 989,399 + BPHYT_RS24160 0.67 -0.1 989,409 - BPHYT_RS24160 0.68 +0.6 989,676 - BPHYT_RS24160 0.85 -0.8 989,962 + +0.7 989,963 - +1.4 989,963 - -1.7 989,963 - -1.1 990,278 + BPHYT_RS24165 0.37 +0.6 990,449 + BPHYT_RS24165 0.57 +0.0 990,452 + BPHYT_RS24165 0.57 -0.7 990,615 - BPHYT_RS24165 0.77 +0.0
Or see this region's nucleotide sequence