Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10680

Experiment: No vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10675 and BPHYT_RS10680 are separated by 103 nucleotidesBPHYT_RS10680 and BPHYT_RS10685 are separated by 21 nucleotides BPHYT_RS10675: BPHYT_RS10675 - muconate cycloisomerase, at 2,430,498 to 2,431,655 _RS10675 BPHYT_RS10680: BPHYT_RS10680 - LysR family transcriptional regulator, at 2,431,759 to 2,432,646 _RS10680 BPHYT_RS10685: BPHYT_RS10685 - LysR family transcriptional regulator, at 2,432,668 to 2,433,585 _RS10685 Position (kb) 2431 2432 2433Strain fitness (log2 ratio) -1 0 1at 2431.177 kb on + strand, within BPHYT_RS10675at 2431.755 kb on - strandat 2431.755 kb on - strandat 2432.524 kb on + strand, within BPHYT_RS10680at 2432.525 kb on - strand, within BPHYT_RS10680at 2433.071 kb on + strand, within BPHYT_RS10685at 2433.071 kb on + strand, within BPHYT_RS10685at 2433.196 kb on - strandat 2433.252 kb on - strand, within BPHYT_RS10685

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t1
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2,431,177 + BPHYT_RS10675 0.59 -0.8
2,431,755 - +0.1
2,431,755 - -0.0
2,432,524 + BPHYT_RS10680 0.86 +0.4
2,432,525 - BPHYT_RS10680 0.86 +0.2
2,433,071 + BPHYT_RS10685 0.44 +0.6
2,433,071 + BPHYT_RS10685 0.44 +1.5
2,433,196 - -0.1
2,433,252 - BPHYT_RS10685 0.64 +0.3

Or see this region's nucleotide sequence