Experiment: No vitamins t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04855 and BPHYT_RS04860 overlap by 1 nucleotides BPHYT_RS04860 and BPHYT_RS04865 are separated by 46 nucleotides BPHYT_RS04865 and BPHYT_RS04870 are separated by 42 nucleotides BPHYT_RS04870 and BPHYT_RS04875 overlap by 16 nucleotides
BPHYT_RS04855: BPHYT_RS04855 - iron ABC transporter, at 1,118,514 to 1,119,566
_RS04855
BPHYT_RS04860: BPHYT_RS04860 - ABC transporter ATP-binding protein, at 1,119,566 to 1,120,408
_RS04860
BPHYT_RS04865: BPHYT_RS04865 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 1,120,455 to 1,121,516
_RS04865
BPHYT_RS04870: BPHYT_RS04870 - cobalamin synthase, at 1,121,559 to 1,122,335
_RS04870
BPHYT_RS04875: BPHYT_RS04875 - alpha-ribazole phosphatase, at 1,122,320 to 1,122,910
_RS04875
Position (kb) 1120
1121
1122 Strain fitness (log2 ratio) -1
0
1 at 1119.664 kb on + strand, within BPHYT_RS04860 at 1119.664 kb on + strand, within BPHYT_RS04860 at 1119.672 kb on - strand, within BPHYT_RS04860 at 1120.165 kb on + strand, within BPHYT_RS04860 at 1120.282 kb on + strand at 1120.542 kb on - strand at 1121.208 kb on + strand, within BPHYT_RS04865 at 1121.209 kb on - strand, within BPHYT_RS04865 at 1121.310 kb on + strand, within BPHYT_RS04865 at 1121.311 kb on - strand, within BPHYT_RS04865 at 1121.652 kb on + strand, within BPHYT_RS04870 at 1121.692 kb on + strand, within BPHYT_RS04870 at 1121.721 kb on + strand, within BPHYT_RS04870 at 1121.722 kb on - strand, within BPHYT_RS04870 at 1121.850 kb on + strand, within BPHYT_RS04870 at 1121.850 kb on + strand, within BPHYT_RS04870 at 1122.027 kb on + strand, within BPHYT_RS04870 at 1122.028 kb on - strand, within BPHYT_RS04870 at 1122.035 kb on + strand, within BPHYT_RS04870 at 1122.206 kb on - strand, within BPHYT_RS04870 at 1122.229 kb on - strand, within BPHYT_RS04870 at 1122.252 kb on + strand, within BPHYT_RS04870
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins t1 remove 1,119,664 + BPHYT_RS04860 0.12 -0.6 1,119,664 + BPHYT_RS04860 0.12 -0.1 1,119,672 - BPHYT_RS04860 0.13 -0.8 1,120,165 + BPHYT_RS04860 0.71 +1.4 1,120,282 + +0.5 1,120,542 - -0.2 1,121,208 + BPHYT_RS04865 0.71 -0.3 1,121,209 - BPHYT_RS04865 0.71 -1.4 1,121,310 + BPHYT_RS04865 0.81 +0.5 1,121,311 - BPHYT_RS04865 0.81 -1.3 1,121,652 + BPHYT_RS04870 0.12 -1.3 1,121,692 + BPHYT_RS04870 0.17 -0.1 1,121,721 + BPHYT_RS04870 0.21 +0.1 1,121,722 - BPHYT_RS04870 0.21 -0.6 1,121,850 + BPHYT_RS04870 0.37 -0.0 1,121,850 + BPHYT_RS04870 0.37 -0.1 1,122,027 + BPHYT_RS04870 0.60 -0.1 1,122,028 - BPHYT_RS04870 0.60 -0.6 1,122,035 + BPHYT_RS04870 0.61 +1.5 1,122,206 - BPHYT_RS04870 0.83 -0.3 1,122,229 - BPHYT_RS04870 0.86 -0.6 1,122,252 + BPHYT_RS04870 0.89 +0.1
Or see this region's nucleotide sequence