Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28095

Experiment: NAG (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_28085 and AO356_28090 overlap by 4 nucleotidesAO356_28090 and AO356_28095 overlap by 4 nucleotidesAO356_28095 and AO356_28100 are separated by 259 nucleotidesAO356_28100 and AO356_28105 are separated by 60 nucleotides AO356_28085: AO356_28085 - hypothetical protein, at 6,412,635 to 6,413,624 _28085 AO356_28090: AO356_28090 - ABC transporter ATP-binding protein, at 6,413,621 to 6,414,352 _28090 AO356_28095: AO356_28095 - multidrug ABC transporter permease, at 6,414,349 to 6,415,140 _28095 AO356_28100: AO356_28100 - sulfurtransferase, at 6,415,400 to 6,415,933 _28100 AO356_28105: AO356_28105 - LuxR family transcriptional regulator, at 6,415,994 to 6,416,659 _28105 Position (kb) 6414 6415 6416Strain fitness (log2 ratio) -2 -1 0 1at 6413.777 kb on + strand, within AO356_28090at 6414.514 kb on + strand, within AO356_28095at 6414.523 kb on + strand, within AO356_28095at 6414.523 kb on + strand, within AO356_28095at 6414.523 kb on + strand, within AO356_28095at 6414.523 kb on + strand, within AO356_28095at 6414.523 kb on + strand, within AO356_28095at 6414.524 kb on - strand, within AO356_28095at 6414.524 kb on - strand, within AO356_28095at 6414.524 kb on - strand, within AO356_28095at 6414.524 kb on - strand, within AO356_28095at 6414.524 kb on - strand, within AO356_28095at 6414.524 kb on - strand, within AO356_28095at 6414.524 kb on - strand, within AO356_28095at 6414.541 kb on + strand, within AO356_28095at 6414.541 kb on + strand, within AO356_28095at 6414.541 kb on + strand, within AO356_28095at 6414.541 kb on + strand, within AO356_28095at 6414.542 kb on - strand, within AO356_28095at 6414.542 kb on - strand, within AO356_28095at 6414.542 kb on - strand, within AO356_28095at 6414.714 kb on - strand, within AO356_28095at 6414.714 kb on - strand, within AO356_28095at 6414.721 kb on + strand, within AO356_28095at 6414.722 kb on - strand, within AO356_28095at 6414.748 kb on + strand, within AO356_28095at 6414.748 kb on + strand, within AO356_28095at 6414.801 kb on - strand, within AO356_28095at 6414.965 kb on - strand, within AO356_28095at 6415.024 kb on + strand, within AO356_28095at 6415.024 kb on + strand, within AO356_28095at 6415.024 kb on + strand, within AO356_28095at 6415.025 kb on - strand, within AO356_28095at 6415.273 kb on - strandat 6415.308 kb on - strandat 6415.311 kb on - strandat 6415.315 kb on + strandat 6415.315 kb on + strandat 6415.315 kb on + strandat 6415.316 kb on - strandat 6415.316 kb on - strandat 6415.316 kb on - strandat 6415.316 kb on - strandat 6415.334 kb on + strandat 6415.370 kb on - strandat 6415.370 kb on - strandat 6415.721 kb on + strand, within AO356_28100at 6415.722 kb on - strand, within AO356_28100at 6415.722 kb on - strand, within AO356_28100at 6415.841 kb on + strand, within AO356_28100at 6415.841 kb on + strand, within AO356_28100at 6415.842 kb on - strand, within AO356_28100at 6415.843 kb on + strand, within AO356_28100at 6415.843 kb on + strand, within AO356_28100at 6415.853 kb on + strand, within AO356_28100at 6415.997 kb on + strandat 6415.998 kb on - strandat 6415.998 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
remove
6,413,777 + AO356_28090 0.21 +0.2
6,414,514 + AO356_28095 0.21 -0.6
6,414,523 + AO356_28095 0.22 -0.7
6,414,523 + AO356_28095 0.22 -0.5
6,414,523 + AO356_28095 0.22 +0.5
6,414,523 + AO356_28095 0.22 -0.3
6,414,523 + AO356_28095 0.22 -1.1
6,414,524 - AO356_28095 0.22 +0.1
6,414,524 - AO356_28095 0.22 -1.9
6,414,524 - AO356_28095 0.22 -0.1
6,414,524 - AO356_28095 0.22 -1.0
6,414,524 - AO356_28095 0.22 -1.1
6,414,524 - AO356_28095 0.22 -1.8
6,414,524 - AO356_28095 0.22 +0.2
6,414,541 + AO356_28095 0.24 -0.1
6,414,541 + AO356_28095 0.24 +0.5
6,414,541 + AO356_28095 0.24 +0.0
6,414,541 + AO356_28095 0.24 -1.1
6,414,542 - AO356_28095 0.24 +0.1
6,414,542 - AO356_28095 0.24 +0.8
6,414,542 - AO356_28095 0.24 +0.8
6,414,714 - AO356_28095 0.46 -0.2
6,414,714 - AO356_28095 0.46 -1.9
6,414,721 + AO356_28095 0.47 -0.8
6,414,722 - AO356_28095 0.47 +0.3
6,414,748 + AO356_28095 0.50 +0.3
6,414,748 + AO356_28095 0.50 +0.4
6,414,801 - AO356_28095 0.57 +0.3
6,414,965 - AO356_28095 0.78 -0.8
6,415,024 + AO356_28095 0.85 -0.6
6,415,024 + AO356_28095 0.85 -0.8
6,415,024 + AO356_28095 0.85 +1.3
6,415,025 - AO356_28095 0.85 -0.3
6,415,273 - +0.8
6,415,308 - -0.5
6,415,311 - -0.6
6,415,315 + +0.4
6,415,315 + +0.1
6,415,315 + -0.2
6,415,316 - -0.9
6,415,316 - -1.6
6,415,316 - -0.9
6,415,316 - +0.6
6,415,334 + -0.3
6,415,370 - -0.6
6,415,370 - +0.3
6,415,721 + AO356_28100 0.60 +0.9
6,415,722 - AO356_28100 0.60 +0.1
6,415,722 - AO356_28100 0.60 +0.4
6,415,841 + AO356_28100 0.83 +0.5
6,415,841 + AO356_28100 0.83 +0.7
6,415,842 - AO356_28100 0.83 -0.3
6,415,843 + AO356_28100 0.83 -0.6
6,415,843 + AO356_28100 0.83 -2.1
6,415,853 + AO356_28100 0.85 +0.0
6,415,997 + -0.4
6,415,998 - -0.7
6,415,998 - +0.4

Or see this region's nucleotide sequence