Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18265

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18255 and AO356_18260 are separated by 323 nucleotidesAO356_18260 and AO356_18265 are separated by 115 nucleotidesAO356_18265 and AO356_18270 are separated by 216 nucleotides AO356_18255: AO356_18255 - glycerol uptake facilitator GlpF, at 4,114,932 to 4,115,783 _18255 AO356_18260: AO356_18260 - hypothetical protein, at 4,116,107 to 4,116,577 _18260 AO356_18265: AO356_18265 - isomerase, at 4,116,693 to 4,117,484 _18265 AO356_18270: AO356_18270 - iron ABC transporter ATP-binding protein, at 4,117,701 to 4,118,810 _18270 Position (kb) 4116 4117 4118Strain fitness (log2 ratio) -2 -1 0 1 2at 4115.770 kb on - strandat 4115.770 kb on - strandat 4115.770 kb on - strandat 4115.770 kb on - strandat 4115.822 kb on + strandat 4115.822 kb on + strandat 4115.822 kb on + strandat 4115.893 kb on + strandat 4115.893 kb on + strandat 4115.893 kb on + strandat 4115.893 kb on + strandat 4115.893 kb on + strandat 4115.893 kb on + strandat 4115.893 kb on + strandat 4115.893 kb on + strandat 4115.893 kb on + strandat 4115.893 kb on + strandat 4115.893 kb on + strandat 4115.894 kb on - strandat 4115.894 kb on - strandat 4115.894 kb on - strandat 4115.894 kb on - strandat 4115.894 kb on - strandat 4115.894 kb on - strandat 4115.894 kb on - strandat 4115.894 kb on - strandat 4115.894 kb on - strandat 4115.894 kb on - strandat 4115.894 kb on - strandat 4115.894 kb on - strandat 4115.919 kb on + strandat 4115.978 kb on - strandat 4115.978 kb on - strandat 4116.063 kb on + strandat 4116.063 kb on + strandat 4116.063 kb on + strandat 4116.064 kb on - strandat 4116.064 kb on - strandat 4116.130 kb on + strandat 4116.131 kb on - strandat 4116.131 kb on - strandat 4116.138 kb on + strandat 4116.138 kb on + strandat 4116.164 kb on + strand, within AO356_18260at 4116.164 kb on + strand, within AO356_18260at 4116.165 kb on - strand, within AO356_18260at 4116.165 kb on - strand, within AO356_18260at 4116.165 kb on - strand, within AO356_18260at 4116.191 kb on + strand, within AO356_18260at 4116.191 kb on + strand, within AO356_18260at 4116.192 kb on - strand, within AO356_18260at 4116.289 kb on - strand, within AO356_18260at 4116.579 kb on - strandat 4116.579 kb on - strandat 4116.579 kb on - strandat 4116.606 kb on + strandat 4116.607 kb on - strandat 4116.607 kb on - strandat 4116.639 kb on - strandat 4116.679 kb on + strandat 4116.680 kb on - strandat 4116.762 kb on + strandat 4116.763 kb on - strandat 4116.763 kb on - strandat 4116.763 kb on - strandat 4116.763 kb on - strandat 4116.818 kb on + strand, within AO356_18265at 4116.818 kb on + strand, within AO356_18265at 4116.818 kb on + strand, within AO356_18265at 4116.819 kb on - strand, within AO356_18265at 4116.902 kb on - strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.934 kb on + strand, within AO356_18265at 4116.934 kb on + strand, within AO356_18265at 4116.934 kb on + strand, within AO356_18265at 4116.934 kb on + strand, within AO356_18265at 4116.934 kb on + strand, within AO356_18265at 4116.934 kb on + strand, within AO356_18265at 4116.934 kb on + strand, within AO356_18265at 4116.934 kb on + strand, within AO356_18265at 4116.934 kb on + strand, within AO356_18265at 4116.935 kb on - strand, within AO356_18265at 4116.935 kb on - strand, within AO356_18265at 4116.935 kb on - strand, within AO356_18265at 4116.935 kb on - strand, within AO356_18265at 4116.935 kb on - strand, within AO356_18265at 4116.935 kb on - strand, within AO356_18265at 4116.935 kb on - strand, within AO356_18265at 4116.935 kb on - strand, within AO356_18265at 4116.935 kb on - strand, within AO356_18265at 4116.948 kb on + strand, within AO356_18265at 4116.948 kb on + strand, within AO356_18265at 4116.948 kb on + strand, within AO356_18265at 4116.948 kb on + strand, within AO356_18265at 4116.949 kb on - strand, within AO356_18265at 4116.949 kb on - strand, within AO356_18265at 4117.327 kb on - strand, within AO356_18265at 4117.366 kb on - strand, within AO356_18265at 4117.366 kb on - strand, within AO356_18265at 4117.366 kb on - strand, within AO356_18265at 4117.366 kb on - strand, within AO356_18265at 4117.366 kb on - strand, within AO356_18265at 4117.366 kb on - strand, within AO356_18265at 4117.444 kb on + strandat 4117.444 kb on + strandat 4117.553 kb on + strandat 4117.553 kb on + strandat 4117.553 kb on + strandat 4117.553 kb on + strandat 4117.553 kb on + strandat 4117.553 kb on + strandat 4117.553 kb on + strandat 4117.554 kb on - strandat 4117.554 kb on - strandat 4117.554 kb on - strandat 4117.554 kb on - strandat 4117.554 kb on - strandat 4117.554 kb on - strandat 4117.651 kb on - strandat 4117.702 kb on + strandat 4117.702 kb on + strandat 4117.702 kb on + strandat 4117.702 kb on + strandat 4117.703 kb on - strandat 4117.717 kb on + strandat 4117.879 kb on - strand, within AO356_18270at 4117.891 kb on + strand, within AO356_18270at 4117.891 kb on + strand, within AO356_18270at 4117.891 kb on + strand, within AO356_18270at 4117.892 kb on - strand, within AO356_18270at 4117.892 kb on - strand, within AO356_18270at 4117.938 kb on - strand, within AO356_18270at 4117.938 kb on - strand, within AO356_18270at 4117.958 kb on - strand, within AO356_18270at 4117.958 kb on - strand, within AO356_18270at 4118.014 kb on + strand, within AO356_18270at 4118.015 kb on - strand, within AO356_18270at 4118.015 kb on - strand, within AO356_18270at 4118.015 kb on - strand, within AO356_18270at 4118.089 kb on + strand, within AO356_18270at 4118.089 kb on + strand, within AO356_18270at 4118.089 kb on + strand, within AO356_18270at 4118.089 kb on + strand, within AO356_18270at 4118.089 kb on + strand, within AO356_18270at 4118.090 kb on - strand, within AO356_18270at 4118.090 kb on - strand, within AO356_18270at 4118.137 kb on + strand, within AO356_18270at 4118.146 kb on + strand, within AO356_18270at 4118.146 kb on + strand, within AO356_18270at 4118.146 kb on + strand, within AO356_18270at 4118.146 kb on + strand, within AO356_18270at 4118.146 kb on + strand, within AO356_18270at 4118.147 kb on - strand, within AO356_18270at 4118.147 kb on - strand, within AO356_18270at 4118.147 kb on - strand, within AO356_18270at 4118.147 kb on - strand, within AO356_18270at 4118.147 kb on - strand, within AO356_18270at 4118.147 kb on - strand, within AO356_18270

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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4,115,770 - +0.4
4,115,770 - +0.9
4,115,770 - -1.1
4,115,770 - +0.0
4,115,822 + -0.0
4,115,822 + +0.4
4,115,822 + -0.7
4,115,893 + +0.9
4,115,893 + +0.1
4,115,893 + +0.4
4,115,893 + -0.0
4,115,893 + +0.2
4,115,893 + +2.2
4,115,893 + +0.2
4,115,893 + +1.4
4,115,893 + +0.4
4,115,893 + -0.4
4,115,893 + +0.1
4,115,894 - +1.1
4,115,894 - +0.4
4,115,894 - -0.4
4,115,894 - +1.2
4,115,894 - +0.3
4,115,894 - +0.8
4,115,894 - -2.3
4,115,894 - -1.5
4,115,894 - -0.3
4,115,894 - +0.5
4,115,894 - +0.1
4,115,894 - +0.4
4,115,919 + +0.2
4,115,978 - -0.5
4,115,978 - -0.3
4,116,063 + -0.1
4,116,063 + -0.0
4,116,063 + +0.6
4,116,064 - -0.4
4,116,064 - -0.6
4,116,130 + +0.5
4,116,131 - +0.6
4,116,131 - +0.5
4,116,138 + -1.1
4,116,138 + -0.5
4,116,164 + AO356_18260 0.12 +0.2
4,116,164 + AO356_18260 0.12 -0.4
4,116,165 - AO356_18260 0.12 +0.8
4,116,165 - AO356_18260 0.12 +0.8
4,116,165 - AO356_18260 0.12 +0.3
4,116,191 + AO356_18260 0.18 +0.5
4,116,191 + AO356_18260 0.18 +0.7
4,116,192 - AO356_18260 0.18 +0.6
4,116,289 - AO356_18260 0.39 -0.6
4,116,579 - -0.3
4,116,579 - +0.6
4,116,579 - -0.0
4,116,606 + +0.7
4,116,607 - +0.8
4,116,607 - +0.2
4,116,639 - +0.1
4,116,679 + -0.2
4,116,680 - -1.3
4,116,762 + -0.2
4,116,763 - +0.7
4,116,763 - +0.6
4,116,763 - -0.4
4,116,763 - -0.9
4,116,818 + AO356_18265 0.16 +0.9
4,116,818 + AO356_18265 0.16 -0.3
4,116,818 + AO356_18265 0.16 +0.3
4,116,819 - AO356_18265 0.16 -0.5
4,116,902 - AO356_18265 0.26 +0.2
4,116,930 + AO356_18265 0.30 +0.6
4,116,930 + AO356_18265 0.30 -0.6
4,116,930 + AO356_18265 0.30 +1.4
4,116,930 + AO356_18265 0.30 -0.8
4,116,930 + AO356_18265 0.30 +0.0
4,116,930 + AO356_18265 0.30 +0.5
4,116,930 + AO356_18265 0.30 +0.5
4,116,930 + AO356_18265 0.30 -2.6
4,116,930 + AO356_18265 0.30 +0.9
4,116,930 + AO356_18265 0.30 +1.2
4,116,930 + AO356_18265 0.30 +0.3
4,116,931 - AO356_18265 0.30 -1.0
4,116,931 - AO356_18265 0.30 -0.5
4,116,931 - AO356_18265 0.30 -0.5
4,116,931 - AO356_18265 0.30 -0.9
4,116,931 - AO356_18265 0.30 -0.6
4,116,931 - AO356_18265 0.30 +0.1
4,116,931 - AO356_18265 0.30 +0.0
4,116,931 - AO356_18265 0.30 -0.5
4,116,931 - AO356_18265 0.30 +0.6
4,116,931 - AO356_18265 0.30 -0.5
4,116,931 - AO356_18265 0.30 +0.7
4,116,931 - AO356_18265 0.30 +0.5
4,116,931 - AO356_18265 0.30 +0.2
4,116,931 - AO356_18265 0.30 -0.4
4,116,931 - AO356_18265 0.30 -0.1
4,116,931 - AO356_18265 0.30 -0.3
4,116,931 - AO356_18265 0.30 +1.1
4,116,931 - AO356_18265 0.30 +0.6
4,116,931 - AO356_18265 0.30 +0.6
4,116,931 - AO356_18265 0.30 +0.4
4,116,931 - AO356_18265 0.30 -0.0
4,116,934 + AO356_18265 0.30 +0.2
4,116,934 + AO356_18265 0.30 +0.6
4,116,934 + AO356_18265 0.30 -0.5
4,116,934 + AO356_18265 0.30 -0.3
4,116,934 + AO356_18265 0.30 +0.5
4,116,934 + AO356_18265 0.30 +0.5
4,116,934 + AO356_18265 0.30 +0.6
4,116,934 + AO356_18265 0.30 +0.6
4,116,934 + AO356_18265 0.30 -0.1
4,116,935 - AO356_18265 0.31 +0.4
4,116,935 - AO356_18265 0.31 +1.2
4,116,935 - AO356_18265 0.31 +0.9
4,116,935 - AO356_18265 0.31 +0.2
4,116,935 - AO356_18265 0.31 +0.2
4,116,935 - AO356_18265 0.31 +0.3
4,116,935 - AO356_18265 0.31 +0.0
4,116,935 - AO356_18265 0.31 +0.1
4,116,935 - AO356_18265 0.31 +0.0
4,116,948 + AO356_18265 0.32 +0.1
4,116,948 + AO356_18265 0.32 -0.5
4,116,948 + AO356_18265 0.32 +0.1
4,116,948 + AO356_18265 0.32 +0.2
4,116,949 - AO356_18265 0.32 +0.7
4,116,949 - AO356_18265 0.32 -0.3
4,117,327 - AO356_18265 0.80 +0.2
4,117,366 - AO356_18265 0.85 -0.6
4,117,366 - AO356_18265 0.85 -1.3
4,117,366 - AO356_18265 0.85 +0.8
4,117,366 - AO356_18265 0.85 +0.0
4,117,366 - AO356_18265 0.85 -0.5
4,117,366 - AO356_18265 0.85 +0.6
4,117,444 + +0.6
4,117,444 + -1.6
4,117,553 + -0.3
4,117,553 + -0.4
4,117,553 + +0.2
4,117,553 + +0.3
4,117,553 + -0.3
4,117,553 + +0.2
4,117,553 + +0.2
4,117,554 - +0.3
4,117,554 - -0.8
4,117,554 - -0.4
4,117,554 - +1.0
4,117,554 - +0.5
4,117,554 - +0.0
4,117,651 - +0.3
4,117,702 + -1.1
4,117,702 + +0.5
4,117,702 + +0.7
4,117,702 + +0.1
4,117,703 - -0.1
4,117,717 + -0.1
4,117,879 - AO356_18270 0.16 -1.0
4,117,891 + AO356_18270 0.17 -0.6
4,117,891 + AO356_18270 0.17 +1.4
4,117,891 + AO356_18270 0.17 -1.1
4,117,892 - AO356_18270 0.17 +0.4
4,117,892 - AO356_18270 0.17 +0.6
4,117,938 - AO356_18270 0.21 +0.3
4,117,938 - AO356_18270 0.21 -0.2
4,117,958 - AO356_18270 0.23 +0.3
4,117,958 - AO356_18270 0.23 +0.3
4,118,014 + AO356_18270 0.28 -0.1
4,118,015 - AO356_18270 0.28 -0.9
4,118,015 - AO356_18270 0.28 -0.2
4,118,015 - AO356_18270 0.28 -0.7
4,118,089 + AO356_18270 0.35 -1.0
4,118,089 + AO356_18270 0.35 -1.0
4,118,089 + AO356_18270 0.35 +0.6
4,118,089 + AO356_18270 0.35 -0.0
4,118,089 + AO356_18270 0.35 +0.8
4,118,090 - AO356_18270 0.35 +0.3
4,118,090 - AO356_18270 0.35 +0.1
4,118,137 + AO356_18270 0.39 +0.3
4,118,146 + AO356_18270 0.40 -0.2
4,118,146 + AO356_18270 0.40 -0.3
4,118,146 + AO356_18270 0.40 +0.1
4,118,146 + AO356_18270 0.40 -0.1
4,118,146 + AO356_18270 0.40 -0.3
4,118,147 - AO356_18270 0.40 +0.2
4,118,147 - AO356_18270 0.40 -0.9
4,118,147 - AO356_18270 0.40 +0.2
4,118,147 - AO356_18270 0.40 +0.5
4,118,147 - AO356_18270 0.40 +0.7
4,118,147 - AO356_18270 0.40 +0.7

Or see this region's nucleotide sequence