Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_17375

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_17370 and AO356_17375 are separated by 98 nucleotidesAO356_17375 and AO356_17380 are separated by 472 nucleotides AO356_17370: AO356_17370 - ATP-dependent RNA helicase RhlB, at 3,914,055 to 3,915,518 _17370 AO356_17375: AO356_17375 - carboxylesterase, at 3,915,617 to 3,916,273 _17375 AO356_17380: AO356_17380 - amino acid ABC transporter substrate-binding protein, at 3,916,746 to 3,917,777 _17380 Position (kb) 3915 3916 3917Strain fitness (log2 ratio) -1 0 1 2at 3914.923 kb on + strand, within AO356_17370at 3914.923 kb on + strand, within AO356_17370at 3914.923 kb on + strand, within AO356_17370at 3914.923 kb on + strand, within AO356_17370at 3914.923 kb on + strand, within AO356_17370at 3914.924 kb on - strand, within AO356_17370at 3914.924 kb on - strand, within AO356_17370at 3914.924 kb on - strand, within AO356_17370at 3914.924 kb on - strand, within AO356_17370at 3915.010 kb on + strand, within AO356_17370at 3915.010 kb on + strand, within AO356_17370at 3915.010 kb on + strand, within AO356_17370at 3915.010 kb on + strand, within AO356_17370at 3915.010 kb on + strand, within AO356_17370at 3915.010 kb on + strand, within AO356_17370at 3915.011 kb on - strand, within AO356_17370at 3915.011 kb on - strand, within AO356_17370at 3915.011 kb on - strand, within AO356_17370at 3915.011 kb on - strand, within AO356_17370at 3915.011 kb on - strandat 3915.011 kb on - strand, within AO356_17370at 3915.127 kb on + strand, within AO356_17370at 3915.247 kb on - strand, within AO356_17370at 3915.247 kb on - strand, within AO356_17370at 3915.247 kb on - strand, within AO356_17370at 3915.482 kb on + strandat 3915.482 kb on + strandat 3915.482 kb on + strandat 3915.533 kb on - strandat 3915.541 kb on + strandat 3915.541 kb on + strandat 3915.542 kb on - strandat 3915.542 kb on - strandat 3915.555 kb on + strandat 3915.555 kb on + strandat 3915.555 kb on + strandat 3915.555 kb on + strandat 3915.555 kb on + strandat 3915.556 kb on - strandat 3915.556 kb on - strandat 3915.556 kb on - strandat 3915.556 kb on - strandat 3915.556 kb on - strandat 3915.556 kb on - strandat 3915.579 kb on - strandat 3915.579 kb on - strandat 3915.691 kb on - strand, within AO356_17375at 3915.730 kb on - strand, within AO356_17375at 3915.761 kb on + strand, within AO356_17375at 3915.775 kb on - strand, within AO356_17375at 3915.852 kb on + strand, within AO356_17375at 3915.852 kb on + strand, within AO356_17375at 3915.852 kb on + strand, within AO356_17375at 3915.852 kb on + strand, within AO356_17375at 3915.852 kb on + strand, within AO356_17375at 3915.852 kb on + strand, within AO356_17375at 3915.852 kb on + strand, within AO356_17375at 3915.853 kb on - strand, within AO356_17375at 3915.853 kb on - strand, within AO356_17375at 3915.853 kb on - strand, within AO356_17375at 3915.853 kb on - strand, within AO356_17375at 3915.853 kb on - strand, within AO356_17375at 3915.853 kb on - strand, within AO356_17375at 3915.853 kb on - strand, within AO356_17375at 3915.853 kb on - strand, within AO356_17375at 3915.853 kb on - strand, within AO356_17375at 3915.853 kb on - strand, within AO356_17375at 3915.853 kb on - strand, within AO356_17375at 3915.853 kb on - strand, within AO356_17375at 3915.853 kb on - strand, within AO356_17375at 3915.853 kb on - strand, within AO356_17375at 3915.853 kb on - strand, within AO356_17375at 3915.853 kb on - strand, within AO356_17375at 3915.857 kb on - strand, within AO356_17375at 3915.857 kb on - strand, within AO356_17375at 3915.857 kb on - strand, within AO356_17375at 3915.857 kb on - strand, within AO356_17375at 3915.857 kb on - strand, within AO356_17375at 3915.857 kb on - strand, within AO356_17375at 3915.857 kb on - strand, within AO356_17375at 3915.857 kb on - strand, within AO356_17375at 3915.912 kb on + strand, within AO356_17375at 3915.913 kb on - strand, within AO356_17375at 3915.913 kb on - strand, within AO356_17375at 3915.965 kb on + strand, within AO356_17375at 3916.071 kb on + strand, within AO356_17375at 3916.072 kb on - strand, within AO356_17375at 3916.090 kb on - strand, within AO356_17375at 3916.090 kb on - strand, within AO356_17375at 3916.191 kb on + strand, within AO356_17375at 3916.222 kb on + strandat 3916.223 kb on - strandat 3916.223 kb on - strandat 3916.319 kb on + strandat 3916.320 kb on - strandat 3916.345 kb on - strandat 3916.345 kb on - strandat 3916.348 kb on + strandat 3916.348 kb on + strandat 3916.348 kb on + strandat 3916.349 kb on - strandat 3916.349 kb on - strandat 3916.349 kb on - strandat 3916.388 kb on + strandat 3916.389 kb on - strandat 3916.451 kb on + strandat 3916.452 kb on - strandat 3916.452 kb on - strandat 3916.452 kb on - strandat 3916.452 kb on - strandat 3916.469 kb on + strandat 3916.469 kb on + strandat 3916.469 kb on + strandat 3916.469 kb on + strandat 3916.469 kb on + strandat 3916.469 kb on + strandat 3916.469 kb on + strandat 3916.470 kb on - strandat 3916.476 kb on + strandat 3916.477 kb on - strandat 3916.477 kb on - strandat 3916.477 kb on - strandat 3916.477 kb on - strandat 3916.495 kb on - strandat 3916.558 kb on - strandat 3916.558 kb on - strandat 3916.603 kb on + strandat 3916.618 kb on + strandat 3916.619 kb on - strandat 3916.619 kb on - strandat 3916.619 kb on - strandat 3916.619 kb on - strandat 3916.619 kb on - strandat 3916.619 kb on - strandat 3916.621 kb on + strandat 3916.622 kb on - strandat 3916.622 kb on - strandat 3916.622 kb on - strandat 3916.622 kb on - strandat 3916.622 kb on - strandat 3916.629 kb on + strandat 3916.630 kb on - strandat 3916.630 kb on - strandat 3916.630 kb on - strandat 3916.753 kb on + strandat 3916.754 kb on - strandat 3916.793 kb on - strandat 3916.793 kb on - strandat 3916.793 kb on - strandat 3916.793 kb on - strandat 3917.121 kb on + strand, within AO356_17380at 3917.121 kb on + strand, within AO356_17380at 3917.121 kb on + strand, within AO356_17380at 3917.121 kb on + strand, within AO356_17380at 3917.121 kb on + strand, within AO356_17380at 3917.122 kb on - strand, within AO356_17380at 3917.122 kb on - strand, within AO356_17380at 3917.122 kb on - strand, within AO356_17380at 3917.122 kb on - strand, within AO356_17380at 3917.122 kb on - strand, within AO356_17380at 3917.122 kb on - strand, within AO356_17380at 3917.122 kb on - strand, within AO356_17380at 3917.124 kb on + strand, within AO356_17380at 3917.124 kb on + strand, within AO356_17380at 3917.124 kb on + strand, within AO356_17380at 3917.124 kb on + strand, within AO356_17380at 3917.124 kb on + strand, within AO356_17380at 3917.124 kb on + strand, within AO356_17380at 3917.124 kb on + strand, within AO356_17380at 3917.124 kb on + strand, within AO356_17380at 3917.124 kb on + strand, within AO356_17380at 3917.125 kb on - strand, within AO356_17380at 3917.125 kb on - strand, within AO356_17380at 3917.125 kb on - strand, within AO356_17380at 3917.125 kb on - strand, within AO356_17380at 3917.125 kb on - strand, within AO356_17380at 3917.125 kb on - strand, within AO356_17380at 3917.125 kb on - strand, within AO356_17380at 3917.125 kb on - strand, within AO356_17380at 3917.125 kb on - strand, within AO356_17380at 3917.125 kb on - strand, within AO356_17380at 3917.125 kb on - strand, within AO356_17380at 3917.125 kb on - strand, within AO356_17380at 3917.242 kb on - strand, within AO356_17380at 3917.265 kb on + strand, within AO356_17380at 3917.265 kb on + strand, within AO356_17380at 3917.265 kb on + strand, within AO356_17380at 3917.266 kb on - strand, within AO356_17380

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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3,914,923 + AO356_17370 0.59 -0.0
3,914,923 + AO356_17370 0.59 +0.1
3,914,923 + AO356_17370 0.59 +0.5
3,914,923 + AO356_17370 0.59 -0.4
3,914,923 + AO356_17370 0.59 +0.4
3,914,924 - AO356_17370 0.59 -0.3
3,914,924 - AO356_17370 0.59 +0.2
3,914,924 - AO356_17370 0.59 +0.6
3,914,924 - AO356_17370 0.59 +0.6
3,915,010 + AO356_17370 0.65 -1.1
3,915,010 + AO356_17370 0.65 +1.8
3,915,010 + AO356_17370 0.65 -0.4
3,915,010 + AO356_17370 0.65 -0.6
3,915,010 + AO356_17370 0.65 +0.5
3,915,010 + AO356_17370 0.65 -1.2
3,915,011 - AO356_17370 0.65 +1.0
3,915,011 - AO356_17370 0.65 +0.4
3,915,011 - AO356_17370 0.65 -0.5
3,915,011 - AO356_17370 0.65 +0.9
3,915,011 - +0.8
3,915,011 - AO356_17370 0.65 -0.8
3,915,127 + AO356_17370 0.73 -1.7
3,915,247 - AO356_17370 0.81 +1.6
3,915,247 - AO356_17370 0.81 -1.0
3,915,247 - AO356_17370 0.81 -0.1
3,915,482 + -0.5
3,915,482 + +0.1
3,915,482 + +0.1
3,915,533 - +1.3
3,915,541 + -0.5
3,915,541 + +0.8
3,915,542 - -0.9
3,915,542 - +0.5
3,915,555 + +0.5
3,915,555 + +0.4
3,915,555 + -0.1
3,915,555 + -0.2
3,915,555 + -0.1
3,915,556 - -0.3
3,915,556 - +0.1
3,915,556 - +0.5
3,915,556 - +0.6
3,915,556 - +0.9
3,915,556 - -1.4
3,915,579 - -0.1
3,915,579 - +0.1
3,915,691 - AO356_17375 0.11 +0.4
3,915,730 - AO356_17375 0.17 +0.5
3,915,761 + AO356_17375 0.22 +0.3
3,915,775 - AO356_17375 0.24 +0.6
3,915,852 + AO356_17375 0.36 +0.8
3,915,852 + AO356_17375 0.36 +0.6
3,915,852 + AO356_17375 0.36 -0.3
3,915,852 + AO356_17375 0.36 -0.1
3,915,852 + AO356_17375 0.36 +0.6
3,915,852 + AO356_17375 0.36 +0.3
3,915,852 + AO356_17375 0.36 +0.2
3,915,853 - AO356_17375 0.36 +0.7
3,915,853 - AO356_17375 0.36 -0.7
3,915,853 - AO356_17375 0.36 +1.6
3,915,853 - AO356_17375 0.36 -0.5
3,915,853 - AO356_17375 0.36 +0.5
3,915,853 - AO356_17375 0.36 +0.4
3,915,853 - AO356_17375 0.36 -0.4
3,915,853 - AO356_17375 0.36 +0.3
3,915,853 - AO356_17375 0.36 +0.3
3,915,853 - AO356_17375 0.36 -0.2
3,915,853 - AO356_17375 0.36 +0.5
3,915,853 - AO356_17375 0.36 -0.6
3,915,853 - AO356_17375 0.36 +0.1
3,915,853 - AO356_17375 0.36 +0.8
3,915,853 - AO356_17375 0.36 +0.6
3,915,853 - AO356_17375 0.36 +2.1
3,915,857 - AO356_17375 0.37 +0.5
3,915,857 - AO356_17375 0.37 +0.6
3,915,857 - AO356_17375 0.37 -0.6
3,915,857 - AO356_17375 0.37 +1.4
3,915,857 - AO356_17375 0.37 +0.7
3,915,857 - AO356_17375 0.37 -0.1
3,915,857 - AO356_17375 0.37 +0.9
3,915,857 - AO356_17375 0.37 -0.2
3,915,912 + AO356_17375 0.45 -0.1
3,915,913 - AO356_17375 0.45 +0.2
3,915,913 - AO356_17375 0.45 +0.6
3,915,965 + AO356_17375 0.53 +0.1
3,916,071 + AO356_17375 0.69 +0.0
3,916,072 - AO356_17375 0.69 +1.5
3,916,090 - AO356_17375 0.72 +0.6
3,916,090 - AO356_17375 0.72 +1.2
3,916,191 + AO356_17375 0.87 -1.3
3,916,222 + -1.5
3,916,223 - +0.6
3,916,223 - +1.3
3,916,319 + -0.6
3,916,320 - +1.5
3,916,345 - +0.2
3,916,345 - +0.8
3,916,348 + +0.5
3,916,348 + -0.7
3,916,348 + +0.5
3,916,349 - +0.3
3,916,349 - -0.7
3,916,349 - +0.9
3,916,388 + +0.5
3,916,389 - +0.8
3,916,451 + +0.2
3,916,452 - +1.1
3,916,452 - +0.9
3,916,452 - -1.1
3,916,452 - -0.5
3,916,469 + +2.5
3,916,469 + +0.1
3,916,469 + -1.2
3,916,469 + +1.6
3,916,469 + -0.6
3,916,469 + +0.2
3,916,469 + -0.2
3,916,470 - +0.3
3,916,476 + +0.2
3,916,477 - +0.5
3,916,477 - +0.6
3,916,477 - +0.1
3,916,477 - +0.6
3,916,495 - -0.9
3,916,558 - +0.7
3,916,558 - -0.2
3,916,603 + +0.8
3,916,618 + +0.1
3,916,619 - +0.2
3,916,619 - +0.5
3,916,619 - +1.0
3,916,619 - +0.1
3,916,619 - +1.2
3,916,619 - +0.2
3,916,621 + +0.3
3,916,622 - +0.3
3,916,622 - +1.1
3,916,622 - +1.6
3,916,622 - +0.5
3,916,622 - +1.2
3,916,629 + -0.2
3,916,630 - +1.7
3,916,630 - +0.2
3,916,630 - +0.7
3,916,753 + +0.6
3,916,754 - +0.8
3,916,793 - +0.2
3,916,793 - +0.6
3,916,793 - -0.5
3,916,793 - +0.4
3,917,121 + AO356_17380 0.36 +0.4
3,917,121 + AO356_17380 0.36 +1.5
3,917,121 + AO356_17380 0.36 +0.1
3,917,121 + AO356_17380 0.36 +0.1
3,917,121 + AO356_17380 0.36 -0.1
3,917,122 - AO356_17380 0.36 +0.8
3,917,122 - AO356_17380 0.36 +0.6
3,917,122 - AO356_17380 0.36 +0.5
3,917,122 - AO356_17380 0.36 +0.4
3,917,122 - AO356_17380 0.36 +0.6
3,917,122 - AO356_17380 0.36 +0.8
3,917,122 - AO356_17380 0.36 +1.5
3,917,124 + AO356_17380 0.37 +0.8
3,917,124 + AO356_17380 0.37 -0.2
3,917,124 + AO356_17380 0.37 +1.4
3,917,124 + AO356_17380 0.37 +1.3
3,917,124 + AO356_17380 0.37 +0.6
3,917,124 + AO356_17380 0.37 +1.2
3,917,124 + AO356_17380 0.37 +0.3
3,917,124 + AO356_17380 0.37 +0.1
3,917,124 + AO356_17380 0.37 +0.9
3,917,125 - AO356_17380 0.37 +0.8
3,917,125 - AO356_17380 0.37 +1.1
3,917,125 - AO356_17380 0.37 +0.1
3,917,125 - AO356_17380 0.37 +0.5
3,917,125 - AO356_17380 0.37 +0.6
3,917,125 - AO356_17380 0.37 +0.9
3,917,125 - AO356_17380 0.37 +1.6
3,917,125 - AO356_17380 0.37 +1.0
3,917,125 - AO356_17380 0.37 +1.3
3,917,125 - AO356_17380 0.37 +0.8
3,917,125 - AO356_17380 0.37 +0.6
3,917,125 - AO356_17380 0.37 +0.6
3,917,242 - AO356_17380 0.48 +0.6
3,917,265 + AO356_17380 0.50 +0.9
3,917,265 + AO356_17380 0.50 +0.4
3,917,265 + AO356_17380 0.50 +1.0
3,917,266 - AO356_17380 0.50 +0.3

Or see this region's nucleotide sequence