Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14410

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14405 and AO356_14410 are separated by 78 nucleotidesAO356_14410 and AO356_14415 overlap by 4 nucleotidesAO356_14415 and AO356_14420 are separated by 70 nucleotides AO356_14405: AO356_14405 - alcohol dehydrogenase, at 3,277,192 to 3,278,340 _14405 AO356_14410: AO356_14410 - ribulose phosphate epimerase, at 3,278,419 to 3,279,093 _14410 AO356_14415: AO356_14415 - phosphoglycolate phosphatase, at 3,279,090 to 3,279,908 _14415 AO356_14420: AO356_14420 - anthranilate synthase, at 3,279,979 to 3,281,460 _14420 Position (kb) 3278 3279 3280Strain fitness (log2 ratio) -3 -2 -1 0 1at 3277.513 kb on + strand, within AO356_14405at 3277.513 kb on + strand, within AO356_14405at 3277.514 kb on - strand, within AO356_14405at 3277.514 kb on - strand, within AO356_14405at 3277.542 kb on + strand, within AO356_14405at 3277.542 kb on + strand, within AO356_14405at 3277.542 kb on + strand, within AO356_14405at 3277.542 kb on + strand, within AO356_14405at 3277.542 kb on + strand, within AO356_14405at 3277.543 kb on - strand, within AO356_14405at 3277.543 kb on - strand, within AO356_14405at 3277.543 kb on - strand, within AO356_14405at 3277.543 kb on - strand, within AO356_14405at 3277.543 kb on - strand, within AO356_14405at 3277.792 kb on + strand, within AO356_14405at 3277.792 kb on + strand, within AO356_14405at 3277.792 kb on + strand, within AO356_14405at 3277.792 kb on + strand, within AO356_14405at 3277.793 kb on - strand, within AO356_14405at 3277.876 kb on + strand, within AO356_14405at 3277.877 kb on - strand, within AO356_14405at 3277.984 kb on + strand, within AO356_14405at 3277.991 kb on + strand, within AO356_14405at 3277.991 kb on + strand, within AO356_14405at 3277.991 kb on + strand, within AO356_14405at 3278.044 kb on + strand, within AO356_14405at 3278.044 kb on + strand, within AO356_14405at 3278.044 kb on + strand, within AO356_14405at 3278.208 kb on + strand, within AO356_14405at 3278.209 kb on - strand, within AO356_14405at 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.376 kb on - strandat 3278.376 kb on - strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3279.200 kb on + strand, within AO356_14415at 3279.200 kb on + strand, within AO356_14415at 3279.200 kb on + strand, within AO356_14415at 3279.200 kb on + strand, within AO356_14415at 3279.200 kb on + strand, within AO356_14415at 3279.200 kb on + strand, within AO356_14415at 3279.200 kb on + strand, within AO356_14415at 3279.201 kb on - strand, within AO356_14415at 3279.366 kb on + strand, within AO356_14415at 3279.366 kb on + strand, within AO356_14415at 3279.406 kb on + strand, within AO356_14415at 3279.407 kb on - strand, within AO356_14415at 3279.517 kb on - strand, within AO356_14415at 3279.700 kb on - strand, within AO356_14415at 3279.700 kb on - strand, within AO356_14415at 3279.700 kb on - strand, within AO356_14415at 3279.763 kb on + strand, within AO356_14415at 3279.763 kb on + strand, within AO356_14415at 3279.763 kb on + strand, within AO356_14415at 3279.796 kb on + strand, within AO356_14415at 3279.796 kb on + strand, within AO356_14415at 3279.796 kb on + strand, within AO356_14415at 3279.796 kb on + strand, within AO356_14415at 3279.797 kb on - strand, within AO356_14415at 3279.797 kb on - strand, within AO356_14415at 3279.797 kb on - strand, within AO356_14415at 3279.797 kb on - strand, within AO356_14415at 3279.942 kb on + strandat 3279.943 kb on - strandat 3279.943 kb on - strandat 3279.943 kb on - strandat 3279.943 kb on - strandat 3280.018 kb on + strandat 3280.019 kb on - strandat 3280.078 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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3,277,513 + AO356_14405 0.28 +0.6
3,277,513 + AO356_14405 0.28 -0.4
3,277,514 - AO356_14405 0.28 -0.1
3,277,514 - AO356_14405 0.28 -0.2
3,277,542 + AO356_14405 0.30 -0.7
3,277,542 + AO356_14405 0.30 -0.7
3,277,542 + AO356_14405 0.30 +1.0
3,277,542 + AO356_14405 0.30 -0.5
3,277,542 + AO356_14405 0.30 +0.3
3,277,543 - AO356_14405 0.31 +0.8
3,277,543 - AO356_14405 0.31 -1.0
3,277,543 - AO356_14405 0.31 -0.3
3,277,543 - AO356_14405 0.31 -0.2
3,277,543 - AO356_14405 0.31 +0.7
3,277,792 + AO356_14405 0.52 +0.6
3,277,792 + AO356_14405 0.52 +0.0
3,277,792 + AO356_14405 0.52 -0.5
3,277,792 + AO356_14405 0.52 +0.6
3,277,793 - AO356_14405 0.52 +0.6
3,277,876 + AO356_14405 0.60 -1.4
3,277,877 - AO356_14405 0.60 -0.3
3,277,984 + AO356_14405 0.69 +0.6
3,277,991 + AO356_14405 0.70 -1.1
3,277,991 + AO356_14405 0.70 +1.5
3,277,991 + AO356_14405 0.70 +0.8
3,278,044 + AO356_14405 0.74 +0.6
3,278,044 + AO356_14405 0.74 +0.7
3,278,044 + AO356_14405 0.74 -1.3
3,278,208 + AO356_14405 0.88 -0.6
3,278,209 - AO356_14405 0.89 +0.4
3,278,375 + -1.0
3,278,375 + +0.7
3,278,375 + +0.2
3,278,375 + -0.2
3,278,375 + +0.3
3,278,375 + +0.2
3,278,375 + +0.2
3,278,375 + -0.4
3,278,376 - +1.0
3,278,376 - -0.0
3,278,377 + +0.6
3,278,377 + +0.1
3,278,377 + -0.3
3,278,377 + -0.6
3,278,377 + -1.1
3,278,377 + +0.6
3,278,377 + +0.3
3,278,377 + +1.0
3,278,377 + +0.1
3,278,378 - -1.3
3,278,378 - +0.2
3,278,378 - -0.3
3,278,378 - +1.5
3,278,378 - +0.5
3,278,378 - +0.5
3,278,378 - +1.1
3,278,378 - +1.5
3,278,378 - +0.6
3,278,378 - -0.3
3,279,200 + AO356_14415 0.13 -2.7
3,279,200 + AO356_14415 0.13 -0.9
3,279,200 + AO356_14415 0.13 -0.8
3,279,200 + AO356_14415 0.13 -1.7
3,279,200 + AO356_14415 0.13 -3.5
3,279,200 + AO356_14415 0.13 -0.7
3,279,200 + AO356_14415 0.13 -1.0
3,279,201 - AO356_14415 0.14 -2.2
3,279,366 + AO356_14415 0.34 -0.2
3,279,366 + AO356_14415 0.34 -2.4
3,279,406 + AO356_14415 0.39 -3.2
3,279,407 - AO356_14415 0.39 +1.0
3,279,517 - AO356_14415 0.52 -0.9
3,279,700 - AO356_14415 0.74 -1.5
3,279,700 - AO356_14415 0.74 -2.8
3,279,700 - AO356_14415 0.74 -0.5
3,279,763 + AO356_14415 0.82 +0.4
3,279,763 + AO356_14415 0.82 +0.8
3,279,763 + AO356_14415 0.82 +0.7
3,279,796 + AO356_14415 0.86 +0.4
3,279,796 + AO356_14415 0.86 +0.5
3,279,796 + AO356_14415 0.86 -0.2
3,279,796 + AO356_14415 0.86 +0.2
3,279,797 - AO356_14415 0.86 -1.2
3,279,797 - AO356_14415 0.86 -0.3
3,279,797 - AO356_14415 0.86 -2.2
3,279,797 - AO356_14415 0.86 -1.8
3,279,942 + +0.2
3,279,943 - -2.6
3,279,943 - -3.0
3,279,943 - -1.6
3,279,943 - -2.4
3,280,018 + -3.6
3,280,019 - -3.3
3,280,078 + -2.7

Or see this region's nucleotide sequence