Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10740

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_10730 and AO356_10735 are separated by 178 nucleotidesAO356_10735 and AO356_10740 overlap by 4 nucleotidesAO356_10740 and AO356_10745 are separated by 177 nucleotides AO356_10730: AO356_10730 - hypothetical protein, at 2,445,451 to 2,446,488 _10730 AO356_10735: AO356_10735 - hypothetical protein, at 2,446,667 to 2,447,284 _10735 AO356_10740: AO356_10740 - RNA polymerase subunit sigma, at 2,447,281 to 2,447,853 _10740 AO356_10745: AO356_10745 - hypothetical protein, at 2,448,031 to 2,449,707 _10745 Position (kb) 2447 2448Strain fitness (log2 ratio) -2 -1 0 1 2at 2446.378 kb on + strand, within AO356_10730at 2446.378 kb on + strand, within AO356_10730at 2446.378 kb on + strand, within AO356_10730at 2446.378 kb on + strand, within AO356_10730at 2446.378 kb on + strand, within AO356_10730at 2446.378 kb on + strand, within AO356_10730at 2446.379 kb on - strand, within AO356_10730at 2446.379 kb on - strand, within AO356_10730at 2446.379 kb on - strand, within AO356_10730at 2446.379 kb on - strand, within AO356_10730at 2446.379 kb on - strand, within AO356_10730at 2446.379 kb on - strand, within AO356_10730at 2446.379 kb on - strand, within AO356_10730at 2446.383 kb on + strand, within AO356_10730at 2446.383 kb on + strand, within AO356_10730at 2446.383 kb on + strand, within AO356_10730at 2446.384 kb on - strand, within AO356_10730at 2446.384 kb on - strand, within AO356_10730at 2446.384 kb on - strand, within AO356_10730at 2446.384 kb on - strand, within AO356_10730at 2446.384 kb on - strand, within AO356_10730at 2446.384 kb on - strand, within AO356_10730at 2446.478 kb on - strandat 2446.478 kb on - strandat 2446.482 kb on + strandat 2446.483 kb on - strandat 2446.483 kb on - strandat 2446.483 kb on - strandat 2446.483 kb on - strandat 2446.483 kb on - strandat 2446.488 kb on + strandat 2446.506 kb on + strandat 2446.506 kb on + strandat 2446.506 kb on + strandat 2446.506 kb on + strandat 2446.507 kb on - strandat 2446.507 kb on - strandat 2446.507 kb on - strandat 2446.507 kb on - strandat 2446.508 kb on + strandat 2446.509 kb on - strandat 2446.509 kb on - strandat 2446.517 kb on - strandat 2446.518 kb on + strandat 2446.519 kb on - strandat 2446.519 kb on - strandat 2446.554 kb on + strandat 2446.554 kb on + strandat 2446.554 kb on + strandat 2446.554 kb on + strandat 2446.554 kb on + strandat 2446.555 kb on - strandat 2446.555 kb on - strandat 2446.555 kb on - strandat 2446.555 kb on - strandat 2446.555 kb on - strandat 2446.555 kb on - strandat 2446.555 kb on - strandat 2446.663 kb on + strandat 2447.290 kb on + strandat 2447.291 kb on - strandat 2447.546 kb on + strand, within AO356_10740at 2447.546 kb on + strand, within AO356_10740at 2447.546 kb on + strand, within AO356_10740at 2447.546 kb on + strand, within AO356_10740at 2447.546 kb on + strand, within AO356_10740at 2447.546 kb on + strand, within AO356_10740at 2447.546 kb on + strand, within AO356_10740at 2447.547 kb on - strand, within AO356_10740at 2447.547 kb on - strand, within AO356_10740at 2447.547 kb on - strand, within AO356_10740at 2447.547 kb on - strand, within AO356_10740at 2447.547 kb on - strand, within AO356_10740at 2447.547 kb on - strand, within AO356_10740at 2447.547 kb on - strand, within AO356_10740at 2447.744 kb on + strand, within AO356_10740at 2447.745 kb on - strand, within AO356_10740at 2447.768 kb on + strand, within AO356_10740at 2447.768 kb on + strand, within AO356_10740at 2447.769 kb on - strand, within AO356_10740at 2447.974 kb on + strandat 2447.974 kb on + strandat 2447.974 kb on + strandat 2447.974 kb on + strandat 2447.975 kb on - strandat 2447.975 kb on - strandat 2447.975 kb on - strandat 2447.975 kb on - strandat 2448.022 kb on + strandat 2448.023 kb on - strandat 2448.167 kb on + strandat 2448.167 kb on + strandat 2448.167 kb on + strandat 2448.167 kb on + strandat 2448.168 kb on - strandat 2448.168 kb on - strandat 2448.168 kb on - strandat 2448.168 kb on - strandat 2448.308 kb on + strand, within AO356_10745at 2448.308 kb on + strand, within AO356_10745at 2448.308 kb on + strand, within AO356_10745at 2448.308 kb on + strand, within AO356_10745at 2448.308 kb on + strand, within AO356_10745at 2448.309 kb on - strand, within AO356_10745at 2448.309 kb on - strand, within AO356_10745at 2448.309 kb on - strand, within AO356_10745at 2448.309 kb on - strand, within AO356_10745at 2448.309 kb on - strand, within AO356_10745at 2448.309 kb on - strand, within AO356_10745at 2448.313 kb on + strand, within AO356_10745at 2448.314 kb on - strand, within AO356_10745at 2448.314 kb on - strand, within AO356_10745at 2448.368 kb on + strand, within AO356_10745at 2448.369 kb on - strand, within AO356_10745at 2448.416 kb on + strand, within AO356_10745at 2448.416 kb on + strand, within AO356_10745at 2448.417 kb on - strand, within AO356_10745at 2448.417 kb on - strand, within AO356_10745at 2448.417 kb on - strand, within AO356_10745at 2448.417 kb on - strand, within AO356_10745at 2448.417 kb on - strand, within AO356_10745at 2448.417 kb on - strand, within AO356_10745at 2448.432 kb on + strand, within AO356_10745at 2448.432 kb on + strand, within AO356_10745at 2448.432 kb on + strand, within AO356_10745at 2448.432 kb on + strand, within AO356_10745at 2448.432 kb on + strand, within AO356_10745at 2448.433 kb on - strand, within AO356_10745at 2448.507 kb on - strand, within AO356_10745at 2448.522 kb on - strand, within AO356_10745at 2448.522 kb on - strand, within AO356_10745at 2448.641 kb on + strand, within AO356_10745at 2448.641 kb on + strand, within AO356_10745at 2448.641 kb on + strand, within AO356_10745at 2448.641 kb on + strand, within AO356_10745at 2448.641 kb on + strand, within AO356_10745at 2448.642 kb on - strand, within AO356_10745at 2448.642 kb on - strand, within AO356_10745at 2448.642 kb on - strand, within AO356_10745at 2448.642 kb on - strand, within AO356_10745at 2448.647 kb on + strand, within AO356_10745at 2448.647 kb on + strand, within AO356_10745at 2448.647 kb on + strand, within AO356_10745at 2448.647 kb on + strand, within AO356_10745at 2448.647 kb on + strand, within AO356_10745at 2448.647 kb on + strand, within AO356_10745at 2448.647 kb on + strand, within AO356_10745at 2448.647 kb on + strand, within AO356_10745at 2448.647 kb on + strand, within AO356_10745at 2448.647 kb on + strand, within AO356_10745at 2448.647 kb on + strand, within AO356_10745at 2448.648 kb on - strand, within AO356_10745at 2448.648 kb on - strand, within AO356_10745at 2448.648 kb on - strand, within AO356_10745at 2448.648 kb on - strand, within AO356_10745at 2448.648 kb on - strand, within AO356_10745at 2448.648 kb on - strand, within AO356_10745at 2448.648 kb on - strand, within AO356_10745at 2448.651 kb on + strand, within AO356_10745at 2448.651 kb on + strand, within AO356_10745at 2448.651 kb on + strand, within AO356_10745at 2448.651 kb on + strand, within AO356_10745at 2448.651 kb on + strand, within AO356_10745at 2448.695 kb on + strand, within AO356_10745at 2448.695 kb on + strand, within AO356_10745at 2448.695 kb on + strand, within AO356_10745at 2448.695 kb on + strand, within AO356_10745at 2448.695 kb on + strand, within AO356_10745at 2448.695 kb on + strand, within AO356_10745at 2448.696 kb on - strand, within AO356_10745at 2448.696 kb on - strand, within AO356_10745at 2448.696 kb on - strand, within AO356_10745at 2448.696 kb on - strand, within AO356_10745at 2448.696 kb on - strand, within AO356_10745at 2448.699 kb on + strand, within AO356_10745at 2448.700 kb on - strand, within AO356_10745at 2448.741 kb on + strand, within AO356_10745at 2448.741 kb on + strand, within AO356_10745at 2448.742 kb on - strand, within AO356_10745

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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2,446,378 + AO356_10730 0.89 -0.2
2,446,378 + AO356_10730 0.89 -0.4
2,446,378 + AO356_10730 0.89 +0.1
2,446,378 + AO356_10730 0.89 +0.1
2,446,378 + AO356_10730 0.89 -2.0
2,446,378 + AO356_10730 0.89 -0.1
2,446,379 - AO356_10730 0.89 -0.9
2,446,379 - AO356_10730 0.89 -0.7
2,446,379 - AO356_10730 0.89 -0.0
2,446,379 - AO356_10730 0.89 -0.2
2,446,379 - AO356_10730 0.89 +0.1
2,446,379 - AO356_10730 0.89 +2.1
2,446,379 - AO356_10730 0.89 +0.7
2,446,383 + AO356_10730 0.90 +0.4
2,446,383 + AO356_10730 0.90 -0.1
2,446,383 + AO356_10730 0.90 -0.1
2,446,384 - AO356_10730 0.90 +0.0
2,446,384 - AO356_10730 0.90 -0.5
2,446,384 - AO356_10730 0.90 +0.5
2,446,384 - AO356_10730 0.90 +0.1
2,446,384 - AO356_10730 0.90 +0.9
2,446,384 - AO356_10730 0.90 -0.7
2,446,478 - +0.5
2,446,478 - -0.3
2,446,482 + +0.1
2,446,483 - -0.9
2,446,483 - +0.7
2,446,483 - -0.2
2,446,483 - +1.1
2,446,483 - +0.7
2,446,488 + +0.1
2,446,506 + +0.0
2,446,506 + +0.2
2,446,506 + +0.5
2,446,506 + +0.2
2,446,507 - -0.2
2,446,507 - -0.6
2,446,507 - +0.1
2,446,507 - +0.2
2,446,508 + +1.7
2,446,509 - +0.1
2,446,509 - +0.3
2,446,517 - -1.0
2,446,518 + +0.2
2,446,519 - -0.7
2,446,519 - +0.2
2,446,554 + -0.6
2,446,554 + +0.1
2,446,554 + +0.2
2,446,554 + +0.2
2,446,554 + -0.3
2,446,555 - +0.1
2,446,555 - -2.4
2,446,555 - +0.0
2,446,555 - +0.0
2,446,555 - +0.7
2,446,555 - +0.2
2,446,555 - +0.2
2,446,663 + +0.9
2,447,290 + -0.4
2,447,291 - +0.0
2,447,546 + AO356_10740 0.46 +0.1
2,447,546 + AO356_10740 0.46 +0.8
2,447,546 + AO356_10740 0.46 +0.3
2,447,546 + AO356_10740 0.46 -0.9
2,447,546 + AO356_10740 0.46 +0.3
2,447,546 + AO356_10740 0.46 +0.4
2,447,546 + AO356_10740 0.46 -0.3
2,447,547 - AO356_10740 0.46 +0.0
2,447,547 - AO356_10740 0.46 -0.3
2,447,547 - AO356_10740 0.46 -0.8
2,447,547 - AO356_10740 0.46 -0.2
2,447,547 - AO356_10740 0.46 -0.3
2,447,547 - AO356_10740 0.46 +0.7
2,447,547 - AO356_10740 0.46 +0.7
2,447,744 + AO356_10740 0.81 -0.4
2,447,745 - AO356_10740 0.81 +0.5
2,447,768 + AO356_10740 0.85 +0.1
2,447,768 + AO356_10740 0.85 +0.3
2,447,769 - AO356_10740 0.85 +0.2
2,447,974 + +0.4
2,447,974 + +0.1
2,447,974 + +2.4
2,447,974 + +1.5
2,447,975 - +0.1
2,447,975 - -0.1
2,447,975 - -0.2
2,447,975 - -0.3
2,448,022 + +0.4
2,448,023 - +0.4
2,448,167 + +0.7
2,448,167 + +1.5
2,448,167 + +0.3
2,448,167 + +0.3
2,448,168 - +0.7
2,448,168 - +0.6
2,448,168 - -0.7
2,448,168 - +0.7
2,448,308 + AO356_10745 0.17 +0.7
2,448,308 + AO356_10745 0.17 +0.3
2,448,308 + AO356_10745 0.17 +0.4
2,448,308 + AO356_10745 0.17 +0.2
2,448,308 + AO356_10745 0.17 +0.6
2,448,309 - AO356_10745 0.17 -0.4
2,448,309 - AO356_10745 0.17 -0.2
2,448,309 - AO356_10745 0.17 -0.1
2,448,309 - AO356_10745 0.17 +1.5
2,448,309 - AO356_10745 0.17 +0.8
2,448,309 - AO356_10745 0.17 +1.4
2,448,313 + AO356_10745 0.17 +1.0
2,448,314 - AO356_10745 0.17 +0.1
2,448,314 - AO356_10745 0.17 +0.6
2,448,368 + AO356_10745 0.20 -0.1
2,448,369 - AO356_10745 0.20 +0.9
2,448,416 + AO356_10745 0.23 -0.1
2,448,416 + AO356_10745 0.23 -0.2
2,448,417 - AO356_10745 0.23 +0.2
2,448,417 - AO356_10745 0.23 -0.4
2,448,417 - AO356_10745 0.23 +0.2
2,448,417 - AO356_10745 0.23 -0.4
2,448,417 - AO356_10745 0.23 -0.2
2,448,417 - AO356_10745 0.23 -0.3
2,448,432 + AO356_10745 0.24 -0.6
2,448,432 + AO356_10745 0.24 -0.1
2,448,432 + AO356_10745 0.24 +0.0
2,448,432 + AO356_10745 0.24 -1.1
2,448,432 + AO356_10745 0.24 +2.0
2,448,433 - AO356_10745 0.24 +0.4
2,448,507 - AO356_10745 0.28 -0.7
2,448,522 - AO356_10745 0.29 +0.4
2,448,522 - AO356_10745 0.29 +0.3
2,448,641 + AO356_10745 0.36 +0.8
2,448,641 + AO356_10745 0.36 +0.0
2,448,641 + AO356_10745 0.36 +0.3
2,448,641 + AO356_10745 0.36 -0.7
2,448,641 + AO356_10745 0.36 -0.0
2,448,642 - AO356_10745 0.36 +0.3
2,448,642 - AO356_10745 0.36 +1.6
2,448,642 - AO356_10745 0.36 -0.6
2,448,642 - AO356_10745 0.36 -0.0
2,448,647 + AO356_10745 0.37 -0.1
2,448,647 + AO356_10745 0.37 +0.4
2,448,647 + AO356_10745 0.37 -0.6
2,448,647 + AO356_10745 0.37 -0.6
2,448,647 + AO356_10745 0.37 +0.1
2,448,647 + AO356_10745 0.37 -1.5
2,448,647 + AO356_10745 0.37 +0.9
2,448,647 + AO356_10745 0.37 +1.3
2,448,647 + AO356_10745 0.37 -0.6
2,448,647 + AO356_10745 0.37 -0.8
2,448,647 + AO356_10745 0.37 +0.7
2,448,648 - AO356_10745 0.37 +0.1
2,448,648 - AO356_10745 0.37 +0.5
2,448,648 - AO356_10745 0.37 +0.4
2,448,648 - AO356_10745 0.37 +0.1
2,448,648 - AO356_10745 0.37 -0.0
2,448,648 - AO356_10745 0.37 +0.2
2,448,648 - AO356_10745 0.37 +0.6
2,448,651 + AO356_10745 0.37 -0.8
2,448,651 + AO356_10745 0.37 +0.9
2,448,651 + AO356_10745 0.37 -0.5
2,448,651 + AO356_10745 0.37 +0.8
2,448,651 + AO356_10745 0.37 +0.5
2,448,695 + AO356_10745 0.40 +0.1
2,448,695 + AO356_10745 0.40 +0.2
2,448,695 + AO356_10745 0.40 -0.4
2,448,695 + AO356_10745 0.40 -0.4
2,448,695 + AO356_10745 0.40 +0.4
2,448,695 + AO356_10745 0.40 +1.2
2,448,696 - AO356_10745 0.40 +0.5
2,448,696 - AO356_10745 0.40 -0.3
2,448,696 - AO356_10745 0.40 -0.0
2,448,696 - AO356_10745 0.40 +0.1
2,448,696 - AO356_10745 0.40 +0.3
2,448,699 + AO356_10745 0.40 +0.4
2,448,700 - AO356_10745 0.40 +1.0
2,448,741 + AO356_10745 0.42 +1.5
2,448,741 + AO356_10745 0.42 -0.9
2,448,742 - AO356_10745 0.42 +0.1

Or see this region's nucleotide sequence