Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06150

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06140 and AO356_06145 are separated by 125 nucleotidesAO356_06145 and AO356_06150 are separated by 91 nucleotidesAO356_06150 and AO356_06155 are separated by 1 nucleotidesAO356_06155 and AO356_06160 are separated by 16 nucleotides AO356_06140: AO356_06140 - TetR family transcriptional regulator, at 1,362,977 to 1,363,612 _06140 AO356_06145: AO356_06145 - SAM-dependent methyltransferase, at 1,363,738 to 1,364,520 _06145 AO356_06150: AO356_06150 - energy transducer TonB, at 1,364,612 to 1,365,232 _06150 AO356_06155: AO356_06155 - extensin, at 1,365,234 to 1,365,932 _06155 AO356_06160: AO356_06160 - 2-methylisocitrate lyase, at 1,365,949 to 1,366,770 _06160 Position (kb) 1364 1365 1366Strain fitness (log2 ratio) -2 -1 0 1 2at 1363.763 kb on + strandat 1363.763 kb on + strandat 1363.763 kb on + strandat 1363.773 kb on - strandat 1363.991 kb on + strand, within AO356_06145at 1363.991 kb on + strand, within AO356_06145at 1363.992 kb on - strand, within AO356_06145at 1363.992 kb on - strand, within AO356_06145at 1363.992 kb on - strand, within AO356_06145at 1363.992 kb on - strand, within AO356_06145at 1363.992 kb on - strand, within AO356_06145at 1364.663 kb on + strandat 1364.663 kb on + strandat 1364.663 kb on + strandat 1364.663 kb on + strandat 1364.674 kb on + strand, within AO356_06150at 1364.675 kb on - strand, within AO356_06150at 1364.675 kb on - strand, within AO356_06150at 1364.675 kb on - strand, within AO356_06150at 1364.753 kb on - strand, within AO356_06150at 1364.774 kb on + strand, within AO356_06150at 1364.774 kb on + strand, within AO356_06150at 1365.295 kb on + strandat 1365.296 kb on - strandat 1365.323 kb on + strand, within AO356_06155at 1365.488 kb on - strand, within AO356_06155at 1365.488 kb on - strand, within AO356_06155at 1365.488 kb on - strand, within AO356_06155at 1365.488 kb on - strand, within AO356_06155at 1365.488 kb on - strand, within AO356_06155at 1365.488 kb on - strand, within AO356_06155at 1365.488 kb on - strand, within AO356_06155at 1365.686 kb on + strand, within AO356_06155at 1365.687 kb on - strand, within AO356_06155at 1365.687 kb on - strand, within AO356_06155at 1365.903 kb on + strandat 1365.904 kb on - strandat 1365.904 kb on - strandat 1365.904 kb on - strandat 1365.961 kb on + strandat 1365.961 kb on + strandat 1365.961 kb on + strandat 1365.961 kb on + strandat 1365.962 kb on - strandat 1365.962 kb on - strandat 1365.962 kb on - strandat 1365.962 kb on - strandat 1365.962 kb on - strandat 1365.962 kb on - strandat 1365.962 kb on - strandat 1366.056 kb on - strand, within AO356_06160at 1366.056 kb on - strand, within AO356_06160at 1366.150 kb on + strand, within AO356_06160at 1366.150 kb on + strand, within AO356_06160at 1366.150 kb on + strand, within AO356_06160at 1366.151 kb on - strand, within AO356_06160at 1366.151 kb on - strand, within AO356_06160at 1366.151 kb on - strand, within AO356_06160at 1366.151 kb on - strand, within AO356_06160at 1366.151 kb on - strand, within AO356_06160at 1366.151 kb on - strand, within AO356_06160at 1366.151 kb on - strand, within AO356_06160at 1366.224 kb on - strand, within AO356_06160at 1366.224 kb on - strand, within AO356_06160at 1366.224 kb on - strand, within AO356_06160

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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1,363,763 + +0.5
1,363,763 + -0.0
1,363,763 + +0.5
1,363,773 - +0.0
1,363,991 + AO356_06145 0.32 +0.2
1,363,991 + AO356_06145 0.32 -1.8
1,363,992 - AO356_06145 0.32 +0.6
1,363,992 - AO356_06145 0.32 -2.4
1,363,992 - AO356_06145 0.32 -0.2
1,363,992 - AO356_06145 0.32 -0.4
1,363,992 - AO356_06145 0.32 -0.2
1,364,663 + +0.6
1,364,663 + +0.3
1,364,663 + +0.8
1,364,663 + +0.4
1,364,674 + AO356_06150 0.10 -0.2
1,364,675 - AO356_06150 0.10 -0.6
1,364,675 - AO356_06150 0.10 -0.8
1,364,675 - AO356_06150 0.10 +0.3
1,364,753 - AO356_06150 0.23 -0.3
1,364,774 + AO356_06150 0.26 -0.2
1,364,774 + AO356_06150 0.26 +0.0
1,365,295 + +1.8
1,365,296 - -0.1
1,365,323 + AO356_06155 0.13 +0.2
1,365,488 - AO356_06155 0.36 -0.1
1,365,488 - AO356_06155 0.36 +0.5
1,365,488 - AO356_06155 0.36 +1.0
1,365,488 - AO356_06155 0.36 +0.6
1,365,488 - AO356_06155 0.36 +0.8
1,365,488 - AO356_06155 0.36 +0.1
1,365,488 - AO356_06155 0.36 -0.7
1,365,686 + AO356_06155 0.65 +0.2
1,365,687 - AO356_06155 0.65 -0.2
1,365,687 - AO356_06155 0.65 -0.3
1,365,903 + +0.5
1,365,904 - -0.4
1,365,904 - +0.8
1,365,904 - +1.1
1,365,961 + -0.1
1,365,961 + +0.1
1,365,961 + +0.4
1,365,961 + -0.5
1,365,962 - -1.2
1,365,962 - +0.1
1,365,962 - +1.0
1,365,962 - -0.2
1,365,962 - -0.2
1,365,962 - +0.4
1,365,962 - +0.9
1,366,056 - AO356_06160 0.13 -0.1
1,366,056 - AO356_06160 0.13 +0.3
1,366,150 + AO356_06160 0.24 +0.4
1,366,150 + AO356_06160 0.24 +1.6
1,366,150 + AO356_06160 0.24 +1.4
1,366,151 - AO356_06160 0.25 +0.3
1,366,151 - AO356_06160 0.25 +0.0
1,366,151 - AO356_06160 0.25 +1.0
1,366,151 - AO356_06160 0.25 -0.6
1,366,151 - AO356_06160 0.25 +0.2
1,366,151 - AO356_06160 0.25 +0.6
1,366,151 - AO356_06160 0.25 +0.6
1,366,224 - AO356_06160 0.33 +0.1
1,366,224 - AO356_06160 0.33 +0.7
1,366,224 - AO356_06160 0.33 +0.1

Or see this region's nucleotide sequence