Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01725 and AO356_01730 are separated by 102 nucleotides AO356_01730 and AO356_01735 are separated by 47 nucleotides AO356_01735 and AO356_01740 are separated by 149 nucleotides AO356_01740 and AO356_01745 are separated by 161 nucleotides
AO356_01725: AO356_01725 - peptidylprolyl isomerase, at 389,300 to 391,171
_01725
AO356_01730: AO356_01730 - tRNA-Ser, at 391,274 to 391,348
_01730
AO356_01735: AO356_01735 - DNA-binding protein HU, at 391,396 to 391,668
_01735
AO356_01740: AO356_01740 - DNA-binding protein, at 391,818 to 394,214
_01740
AO356_01745: AO356_01745 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 394,376 to 395,659
_01745
Position (kb) 391
392
393
394
395 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 391.204 kb on - strand at 391.225 kb on - strand at 391.271 kb on - strand at 391.672 kb on - strand at 391.688 kb on - strand at 391.688 kb on - strand at 391.754 kb on - strand at 391.754 kb on - strand at 391.754 kb on - strand at 391.766 kb on - strand at 391.766 kb on - strand at 391.768 kb on - strand at 391.817 kb on - strand at 391.817 kb on - strand at 391.817 kb on - strand at 391.820 kb on - strand at 391.913 kb on - strand at 391.950 kb on - strand at 393.217 kb on + strand, within AO356_01740 at 393.300 kb on + strand, within AO356_01740 at 393.346 kb on + strand, within AO356_01740 at 393.726 kb on - strand, within AO356_01740 at 393.805 kb on + strand, within AO356_01740 at 394.010 kb on + strand at 394.010 kb on + strand at 394.014 kb on + strand at 394.014 kb on + strand at 394.227 kb on - strand at 394.259 kb on + strand at 394.259 kb on + strand at 394.259 kb on + strand at 394.260 kb on - strand at 394.260 kb on - strand at 394.260 kb on - strand at 394.260 kb on - strand at 394.260 kb on - strand at 394.316 kb on + strand at 394.326 kb on + strand at 394.327 kb on - strand at 394.358 kb on - strand at 394.378 kb on - strand at 394.378 kb on - strand at 394.420 kb on - strand at 394.420 kb on - strand at 394.420 kb on - strand at 394.424 kb on - strand at 394.424 kb on - strand at 394.424 kb on - strand at 394.424 kb on - strand at 394.424 kb on - strand at 394.424 kb on - strand at 394.424 kb on - strand at 394.425 kb on + strand at 394.425 kb on + strand at 394.425 kb on + strand at 394.425 kb on + strand at 394.425 kb on + strand at 394.425 kb on + strand at 394.425 kb on + strand at 394.425 kb on + strand at 394.426 kb on - strand at 394.426 kb on - strand at 394.426 kb on - strand at 394.426 kb on - strand at 394.426 kb on - strand at 394.426 kb on - strand at 394.449 kb on - strand at 394.449 kb on - strand at 394.504 kb on - strand at 394.504 kb on - strand at 394.504 kb on - strand at 394.620 kb on - strand, within AO356_01745 at 394.836 kb on - strand, within AO356_01745 at 394.836 kb on - strand, within AO356_01745 at 394.836 kb on - strand, within AO356_01745 at 395.109 kb on + strand, within AO356_01745 at 395.110 kb on - strand, within AO356_01745 at 395.110 kb on - strand, within AO356_01745 at 395.110 kb on - strand, within AO356_01745 at 395.192 kb on + strand, within AO356_01745 at 395.192 kb on + strand, within AO356_01745 at 395.193 kb on - strand, within AO356_01745 at 395.193 kb on - strand, within AO356_01745 at 395.197 kb on - strand, within AO356_01745
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 391,204 - -0.8 391,225 - -0.8 391,271 - -0.3 391,672 - +0.4 391,688 - -2.1 391,688 - +0.6 391,754 - -0.5 391,754 - +0.0 391,754 - +0.8 391,766 - +0.2 391,766 - -0.1 391,768 - -0.7 391,817 - +0.1 391,817 - -0.4 391,817 - -0.3 391,820 - +0.8 391,913 - +0.3 391,950 - -0.4 393,217 + AO356_01740 0.58 -1.1 393,300 + AO356_01740 0.62 -0.2 393,346 + AO356_01740 0.64 -1.9 393,726 - AO356_01740 0.80 -1.2 393,805 + AO356_01740 0.83 -1.6 394,010 + +0.1 394,010 + -2.2 394,014 + +0.4 394,014 + +0.1 394,227 - +0.1 394,259 + +0.1 394,259 + -0.9 394,259 + -0.8 394,260 - +0.7 394,260 - +0.9 394,260 - -0.0 394,260 - +0.0 394,260 - +1.6 394,316 + -1.4 394,326 + -1.2 394,327 - +0.5 394,358 - -1.9 394,378 - -1.3 394,378 - +0.5 394,420 - +0.7 394,420 - -0.1 394,420 - -1.0 394,424 - -0.1 394,424 - -0.5 394,424 - -0.7 394,424 - -0.9 394,424 - -0.3 394,424 - +1.0 394,424 - +0.3 394,425 + -0.5 394,425 + -3.5 394,425 + +0.4 394,425 + -2.1 394,425 + -0.7 394,425 + +0.4 394,425 + -1.9 394,425 + -0.6 394,426 - -0.3 394,426 - -0.4 394,426 - -1.0 394,426 - +0.1 394,426 - +0.1 394,426 - +0.5 394,449 - -0.4 394,449 - -1.6 394,504 - -2.1 394,504 - -0.9 394,504 - -1.4 394,620 - AO356_01745 0.19 -1.4 394,836 - AO356_01745 0.36 -0.9 394,836 - AO356_01745 0.36 -1.2 394,836 - AO356_01745 0.36 -0.2 395,109 + AO356_01745 0.57 -2.6 395,110 - AO356_01745 0.57 -2.2 395,110 - AO356_01745 0.57 -1.8 395,110 - AO356_01745 0.57 -2.1 395,192 + AO356_01745 0.64 -1.2 395,192 + AO356_01745 0.64 +1.4 395,193 - AO356_01745 0.64 -1.6 395,193 - AO356_01745 0.64 -2.1 395,197 - AO356_01745 0.64 -2.1
Or see this region's nucleotide sequence