Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_006408

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
2,786,400	-				-0.4
2,786,482	+				-0.4
2,786,482	+				+0.1
2,786,483	-				+0.4
2,786,483	-				+1.0
2,786,483	-				-1.0
2,786,483	-				-0.4
2,786,750	+		ABIE53_006407	0.36	-1.4
2,786,751	-		ABIE53_006407	0.36	+0.7
2,786,751	-		ABIE53_006407	0.36	-0.1
2,786,851	+		ABIE53_006407	0.46	+1.6
2,786,852	-		ABIE53_006407	0.46	+0.6
2,786,936	+		ABIE53_006407	0.55	-0.2
2,786,937	-		ABIE53_006407	0.55	+0.3
2,786,937	-		ABIE53_006407	0.55	-3.2
2,786,944	+		ABIE53_006407	0.56	+4.0
2,786,944	+		ABIE53_006407	0.56	-3.5
2,786,944	+		ABIE53_006407	0.56	-0.5
2,786,944	+		ABIE53_006407	0.56	-0.7
2,786,944	+		ABIE53_006407	0.56	+1.9
2,786,944	+		ABIE53_006407	0.56	-2.0
2,786,945	-		ABIE53_006407	0.56	-1.0
2,786,945	-		ABIE53_006407	0.56	+0.5
2,787,063	+		ABIE53_006407	0.68	-0.0
2,787,120	-		ABIE53_006407	0.74	-1.4
2,787,152	+		ABIE53_006407	0.77	-0.0
2,787,152	+		ABIE53_006407	0.77	-1.4
2,787,152	+		ABIE53_006407	0.77	+1.0
2,787,152	+		ABIE53_006407	0.77	-2.0
2,787,152	+		ABIE53_006407	0.77	-1.0
2,787,152	+		ABIE53_006407	0.77	-1.2
2,787,206	-		ABIE53_006407	0.82	-0.4
2,787,206	-		ABIE53_006407	0.82	+0.3
2,787,546	+				+1.6
2,787,621	+		ABIE53_006408	0.14	+0.3
2,787,622	-		ABIE53_006408	0.14	+1.4
2,787,622	-		ABIE53_006408	0.14	+1.2
2,787,622	-		ABIE53_006408	0.14	-0.4
2,787,622	-		ABIE53_006408	0.14	-1.9
2,787,709	+		ABIE53_006408	0.20	+0.7
2,787,709	+		ABIE53_006408	0.20	+1.6
2,787,751	-		ABIE53_006408	0.22	-4.1
2,787,751	-		ABIE53_006408	0.22	+3.6
2,787,831	+		ABIE53_006408	0.27	+0.6
2,787,832	-		ABIE53_006408	0.28	-0.7
2,787,832	-		ABIE53_006408	0.28	+1.6
2,787,849	+		ABIE53_006408	0.29	+2.9
2,787,849	+		ABIE53_006408	0.29	-1.7
2,787,849	+		ABIE53_006408	0.29	-1.4
2,787,849	+		ABIE53_006408	0.29	+1.6
2,787,850	-		ABIE53_006408	0.29	+0.1
2,787,850	-		ABIE53_006408	0.29	+0.6
2,787,850	-		ABIE53_006408	0.29	-1.7
2,787,850	-		ABIE53_006408	0.29	+2.1
2,787,850	-		ABIE53_006408	0.29	-1.0
2,787,853	+		ABIE53_006408	0.29	-1.9
2,787,853	+		ABIE53_006408	0.29	-0.7
2,787,853	+		ABIE53_006408	0.29	-0.2
2,787,853	+		ABIE53_006408	0.29	-0.1
2,787,853	+		ABIE53_006408	0.29	+0.3
2,787,853	+		ABIE53_006408	0.29	-0.7
2,787,854	-		ABIE53_006408	0.29	-2.7
2,787,854	-		ABIE53_006408	0.29	-1.0
2,787,854	-		ABIE53_006408	0.29	-0.7
2,787,854	-		ABIE53_006408	0.29	-2.5
2,787,854	-		ABIE53_006408	0.29	-0.7
2,787,854	-		ABIE53_006408	0.29	-1.6
2,787,854	-		ABIE53_006408	0.29	+0.3
2,787,984	+		ABIE53_006408	0.37	-0.7
2,788,033	-		ABIE53_006408	0.40	+0.9
2,788,315	+		ABIE53_006408	0.58	-2.8
2,788,315	+		ABIE53_006408	0.58	-1.2
2,788,316	-		ABIE53_006408	0.58	+0.2
2,788,317	+		ABIE53_006408	0.58	-0.7
2,788,317	+		ABIE53_006408	0.58	-1.9
2,788,318	-		ABIE53_006408	0.58	+1.4
2,788,318	-		ABIE53_006408	0.58	-2.3
2,788,318	-		ABIE53_006408	0.58	-0.7
2,788,318	-		ABIE53_006408	0.58	-1.3
2,788,318	-		ABIE53_006408	0.58	-0.7
2,788,318	-		ABIE53_006408	0.58	+0.7
2,788,318	-		ABIE53_006408	0.58	-1.3
2,788,318	-		ABIE53_006408	0.58	-2.2
2,788,338	+		ABIE53_006408	0.59	-0.3
2,788,339	-		ABIE53_006408	0.59	-2.5
2,788,356	+		ABIE53_006408	0.60	-1.2
2,788,356	+		ABIE53_006408	0.60	+1.2
2,788,356	+		ABIE53_006408	0.60	+1.1
2,788,357	-		ABIE53_006408	0.60	-1.4
2,788,357	-		ABIE53_006408	0.60	-1.6
2,788,648	+		ABIE53_006408	0.79	-1.7
2,788,648	+		ABIE53_006408	0.79	-3.1
2,788,648	+		ABIE53_006408	0.79	+0.6
2,788,648	+		ABIE53_006408	0.79	+0.3
2,788,648	+		ABIE53_006408	0.79	+0.3
2,788,649	-		ABIE53_006408	0.79	-0.1
2,788,698	+		ABIE53_006408	0.82	-4.7
2,788,698	+		ABIE53_006408	0.82	-0.7
2,788,698	+		ABIE53_006408	0.82	-0.4
2,788,699	-		ABIE53_006408	0.82	+2.1
2,788,767	+		ABIE53_006408	0.86	-2.0
2,788,768	-		ABIE53_006408	0.86	+0.8
2,788,787	+		ABIE53_006408	0.87	-0.6
2,788,788	-		ABIE53_006408	0.87	-0.3
2,788,788	-		ABIE53_006408	0.87	+1.6
2,788,979	-				+1.6
2,788,979	-				+0.6
2,789,038	+				+2.5
2,789,038	+				+0.9
2,789,038	+				+1.4
2,789,039	-				-1.0
2,789,072	+				+1.6
2,789,111	+				+2.7
2,789,112	-				-0.4
2,789,273	+				-2.5
2,789,274	-				-0.7
2,789,332	+		ABIE53_006409	0.16	+0.3
2,789,333	-		ABIE53_006409	0.16	+2.1
2,789,568	+		ABIE53_006409	0.84	+3.7
2,789,600	+				-1.2
2,789,600	+				-0.0
2,789,601	-				-1.4
2,789,669	+				-1.4
2,789,764	+				-0.4
2,789,764	+				-2.2
2,789,764	+				-0.8
2,789,764	+				-1.4
2,789,764	+				+1.6
2,789,764	+				-1.0
2,789,765	-				+0.3
2,789,765	-				-2.6
2,789,765	-				-1.0
2,789,765	-				-0.2
2,789,773	+				+1.6
2,789,773	+				+0.4
2,789,773	+				-0.0
2,789,773	+				-0.7
2,789,773	+				+0.2
2,789,774	-				+0.6
2,789,774	-				+0.4
2,789,774	-				+1.6
2,789,774	-				+1.8
2,789,854	-		ABIE53_006410	0.15	-0.4