Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004763 and ABIE53_004764 are separated by 584 nucleotides ABIE53_004764 and ABIE53_004765 are separated by 169 nucleotides ABIE53_004765 and ABIE53_004766 are separated by 2 nucleotides ABIE53_004766 and ABIE53_004767 are separated by 4 nucleotides
ABIE53_004763: ABIE53_004763 - malate dehydrogenase, at 967,866 to 968,849
_004763
ABIE53_004764: ABIE53_004764 - GntR family transcriptional regulator, at 969,434 to 970,234
_004764
ABIE53_004765: ABIE53_004765 - succinate dehydrogenase / fumarate reductase cytochrome b subunit, at 970,404 to 970,820
_004765
ABIE53_004766: ABIE53_004766 - succinate dehydrogenase / fumarate reductase membrane anchor subunit, at 970,823 to 971,191
_004766
ABIE53_004767: ABIE53_004767 - succinate dehydrogenase / fumarate reductase flavoprotein subunit, at 971,196 to 972,971
_004767
Position (kb) 969
970
971 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.899 kb on - strand at 968.899 kb on - strand at 968.899 kb on - strand at 968.899 kb on - strand at 968.899 kb on - strand at 968.899 kb on - strand at 968.899 kb on - strand at 968.899 kb on - strand at 968.899 kb on - strand at 968.901 kb on - strand at 968.925 kb on - strand at 968.973 kb on - strand at 969.072 kb on + strand at 969.072 kb on + strand at 969.072 kb on + strand at 969.072 kb on + strand at 969.072 kb on + strand at 969.073 kb on - strand at 969.073 kb on - strand at 969.073 kb on - strand at 969.073 kb on - strand at 969.073 kb on - strand at 969.326 kb on + strand at 969.327 kb on - strand at 969.327 kb on - strand at 969.327 kb on - strand at 969.327 kb on - strand at 969.360 kb on - strand at 969.382 kb on - strand at 969.417 kb on + strand at 969.417 kb on + strand at 969.417 kb on + strand at 969.417 kb on + strand at 969.418 kb on - strand at 969.539 kb on + strand, within ABIE53_004764 at 969.539 kb on + strand, within ABIE53_004764 at 969.540 kb on - strand, within ABIE53_004764 at 969.610 kb on + strand, within ABIE53_004764 at 969.611 kb on - strand, within ABIE53_004764 at 969.635 kb on + strand, within ABIE53_004764 at 969.635 kb on + strand, within ABIE53_004764 at 969.635 kb on + strand, within ABIE53_004764 at 969.635 kb on + strand, within ABIE53_004764 at 969.635 kb on + strand, within ABIE53_004764 at 969.636 kb on - strand, within ABIE53_004764 at 969.636 kb on - strand, within ABIE53_004764 at 969.636 kb on - strand, within ABIE53_004764 at 969.662 kb on - strand, within ABIE53_004764 at 969.662 kb on - strand, within ABIE53_004764 at 969.771 kb on + strand, within ABIE53_004764 at 969.771 kb on + strand, within ABIE53_004764 at 969.771 kb on + strand, within ABIE53_004764 at 969.995 kb on + strand, within ABIE53_004764 at 969.995 kb on + strand, within ABIE53_004764 at 969.995 kb on + strand, within ABIE53_004764 at 969.995 kb on + strand, within ABIE53_004764 at 969.995 kb on + strand, within ABIE53_004764 at 970.010 kb on + strand, within ABIE53_004764 at 970.011 kb on - strand, within ABIE53_004764 at 970.011 kb on - strand, within ABIE53_004764 at 970.151 kb on + strand, within ABIE53_004764 at 970.151 kb on + strand, within ABIE53_004764 at 970.152 kb on - strand, within ABIE53_004764 at 970.157 kb on + strand at 970.157 kb on + strand at 970.157 kb on + strand at 970.157 kb on + strand at 970.158 kb on - strand at 970.158 kb on - strand at 970.158 kb on - strand at 970.193 kb on + strand at 970.193 kb on + strand at 970.193 kb on + strand at 970.193 kb on + strand at 970.193 kb on + strand at 970.193 kb on + strand at 970.194 kb on - strand at 970.194 kb on - strand at 970.194 kb on - strand at 970.211 kb on + strand at 970.211 kb on + strand at 970.211 kb on + strand at 970.211 kb on + strand at 970.211 kb on + strand at 970.211 kb on + strand at 970.211 kb on + strand at 970.211 kb on + strand at 970.211 kb on + strand at 970.211 kb on + strand at 970.211 kb on + strand at 970.211 kb on + strand at 970.211 kb on + strand at 970.211 kb on + strand at 970.211 kb on + strand at 970.212 kb on - strand at 970.212 kb on - strand at 970.212 kb on - strand at 970.212 kb on - strand at 970.212 kb on - strand at 970.212 kb on - strand at 970.212 kb on - strand at 970.212 kb on - strand at 970.214 kb on + strand at 970.215 kb on - strand at 970.215 kb on - strand at 970.228 kb on + strand at 970.228 kb on + strand at 970.228 kb on + strand at 970.228 kb on + strand at 970.232 kb on + strand at 970.232 kb on + strand at 970.232 kb on + strand at 970.232 kb on + strand at 970.232 kb on + strand at 970.300 kb on + strand at 970.301 kb on - strand at 970.384 kb on + strand at 970.384 kb on + strand at 970.384 kb on + strand at 970.384 kb on + strand at 970.384 kb on + strand at 970.384 kb on + strand at 970.388 kb on + strand at 970.388 kb on + strand at 970.388 kb on + strand at 970.388 kb on + strand at 970.388 kb on + strand at 970.388 kb on + strand at 970.388 kb on + strand at 970.388 kb on + strand at 970.388 kb on + strand at 970.388 kb on + strand at 970.388 kb on + strand at 970.388 kb on + strand at 970.400 kb on + strand at 970.400 kb on + strand at 970.400 kb on + strand at 970.400 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 968,898 + -0.9 968,898 + -0.0 968,898 + +1.4 968,898 + -1.7 968,898 + -3.0 968,898 + +1.2 968,898 + -0.1 968,898 + +1.3 968,898 + -4.0 968,898 + +0.0 968,898 + -2.1 968,898 + -0.1 968,899 - -0.6 968,899 - +1.4 968,899 - -0.6 968,899 - -0.5 968,899 - +0.7 968,899 - +0.4 968,899 - -1.6 968,899 - -1.6 968,899 - -2.3 968,901 - -3.1 968,925 - +0.8 968,973 - -0.0 969,072 + -1.1 969,072 + -0.1 969,072 + -1.8 969,072 + -0.6 969,072 + -0.5 969,073 - +2.3 969,073 - -0.6 969,073 - +1.2 969,073 - -1.1 969,073 - +1.9 969,326 + -1.4 969,327 - +1.6 969,327 - -1.1 969,327 - -0.3 969,327 - +2.4 969,360 - +0.4 969,382 - +1.4 969,417 + -1.6 969,417 + +0.4 969,417 + +2.4 969,417 + -0.6 969,418 - +1.4 969,539 + ABIE53_004764 0.13 +0.6 969,539 + ABIE53_004764 0.13 -1.7 969,540 - ABIE53_004764 0.13 -0.8 969,610 + ABIE53_004764 0.22 -0.9 969,611 - ABIE53_004764 0.22 +1.4 969,635 + ABIE53_004764 0.25 -0.9 969,635 + ABIE53_004764 0.25 -1.6 969,635 + ABIE53_004764 0.25 +1.4 969,635 + ABIE53_004764 0.25 -3.0 969,635 + ABIE53_004764 0.25 +0.7 969,636 - ABIE53_004764 0.25 +1.1 969,636 - ABIE53_004764 0.25 -0.1 969,636 - ABIE53_004764 0.25 -3.1 969,662 - ABIE53_004764 0.28 -2.0 969,662 - ABIE53_004764 0.28 -1.9 969,771 + ABIE53_004764 0.42 -4.1 969,771 + ABIE53_004764 0.42 -0.2 969,771 + ABIE53_004764 0.42 +1.4 969,995 + ABIE53_004764 0.70 +1.4 969,995 + ABIE53_004764 0.70 -1.6 969,995 + ABIE53_004764 0.70 -2.1 969,995 + ABIE53_004764 0.70 -0.2 969,995 + ABIE53_004764 0.70 -0.6 970,010 + ABIE53_004764 0.72 +1.4 970,011 - ABIE53_004764 0.72 +1.4 970,011 - ABIE53_004764 0.72 -1.9 970,151 + ABIE53_004764 0.90 -1.6 970,151 + ABIE53_004764 0.90 -0.0 970,152 - ABIE53_004764 0.90 -1.4 970,157 + -1.7 970,157 + -1.6 970,157 + -2.0 970,157 + -2.1 970,158 - +1.4 970,158 - -3.4 970,158 - -0.6 970,193 + -1.3 970,193 + -2.0 970,193 + -3.0 970,193 + +0.4 970,193 + -2.4 970,193 + +0.0 970,194 - -0.1 970,194 - -2.7 970,194 - -2.1 970,211 + -2.6 970,211 + -0.8 970,211 + -2.0 970,211 + +1.1 970,211 + -0.9 970,211 + +1.9 970,211 + +1.1 970,211 + -2.3 970,211 + +1.4 970,211 + -2.6 970,211 + -0.6 970,211 + -0.6 970,211 + -2.0 970,211 + +0.9 970,211 + -4.3 970,212 - -1.1 970,212 - -2.5 970,212 - -2.3 970,212 - -1.9 970,212 - +1.4 970,212 - -1.4 970,212 - -0.6 970,212 - -1.1 970,214 + -2.3 970,215 - -1.1 970,215 - +1.8 970,228 + +1.9 970,228 + -0.9 970,228 + -1.7 970,228 + -0.6 970,232 + +2.7 970,232 + -1.9 970,232 + -3.1 970,232 + -1.7 970,232 + +0.4 970,300 + +0.4 970,301 - -0.6 970,384 + +3.0 970,384 + -0.3 970,384 + +1.8 970,384 + +0.7 970,384 + -1.7 970,384 + -0.2 970,388 + -1.1 970,388 + -0.6 970,388 + -1.4 970,388 + +1.4 970,388 + -0.9 970,388 + -1.6 970,388 + +1.4 970,388 + +2.1 970,388 + -3.2 970,388 + +0.9 970,388 + +0.3 970,388 + +1.9 970,400 + -1.4 970,400 + +1.4 970,400 + -0.6 970,400 + -1.1
Or see this region's nucleotide sequence