Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004287

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004286 and ABIE53_004287 are separated by 177 nucleotidesABIE53_004287 and ABIE53_004288 are separated by 108 nucleotidesABIE53_004288 and ABIE53_004289 are separated by 164 nucleotides ABIE53_004286: ABIE53_004286 - PiT family inorganic phosphate transporter, at 460,697 to 462,283 _004286 ABIE53_004287: ABIE53_004287 - polyphosphate kinase 2, at 462,461 to 463,387 _004287 ABIE53_004288: ABIE53_004288 - catechol 2,3-dioxygenase-like lactoylglutathione lyase family enzyme, at 463,496 to 463,936 _004288 ABIE53_004289: ABIE53_004289 - gamma-glutamyltranspeptidase/glutathione hydrolase, at 464,101 to 465,834 _004289 Position (kb) 462 463 464Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 461.534 kb on + strand, within ABIE53_004286at 461.534 kb on + strand, within ABIE53_004286at 461.535 kb on - strand, within ABIE53_004286at 461.535 kb on - strand, within ABIE53_004286at 461.620 kb on + strand, within ABIE53_004286at 461.620 kb on + strand, within ABIE53_004286at 461.620 kb on + strand, within ABIE53_004286at 461.669 kb on + strand, within ABIE53_004286at 461.669 kb on + strand, within ABIE53_004286at 461.670 kb on - strand, within ABIE53_004286at 461.712 kb on + strand, within ABIE53_004286at 461.810 kb on + strand, within ABIE53_004286at 461.810 kb on + strand, within ABIE53_004286at 461.810 kb on + strand, within ABIE53_004286at 461.810 kb on + strand, within ABIE53_004286at 461.810 kb on + strand, within ABIE53_004286at 461.810 kb on + strand, within ABIE53_004286at 461.810 kb on + strand, within ABIE53_004286at 461.811 kb on - strand, within ABIE53_004286at 461.811 kb on - strand, within ABIE53_004286at 461.811 kb on - strand, within ABIE53_004286at 461.811 kb on - strand, within ABIE53_004286at 461.811 kb on - strand, within ABIE53_004286at 461.811 kb on - strand, within ABIE53_004286at 461.811 kb on - strand, within ABIE53_004286at 461.811 kb on - strand, within ABIE53_004286at 461.811 kb on - strand, within ABIE53_004286at 461.811 kb on - strand, within ABIE53_004286at 461.811 kb on - strand, within ABIE53_004286at 461.811 kb on - strand, within ABIE53_004286at 462.041 kb on + strand, within ABIE53_004286at 462.041 kb on + strand, within ABIE53_004286at 462.042 kb on - strand, within ABIE53_004286at 462.097 kb on + strand, within ABIE53_004286at 462.097 kb on + strand, within ABIE53_004286at 462.098 kb on - strand, within ABIE53_004286at 462.098 kb on - strand, within ABIE53_004286at 462.098 kb on - strand, within ABIE53_004286at 462.101 kb on + strand, within ABIE53_004286at 462.101 kb on + strand, within ABIE53_004286at 462.101 kb on + strand, within ABIE53_004286at 462.101 kb on + strand, within ABIE53_004286at 462.102 kb on - strand, within ABIE53_004286at 462.102 kb on - strand, within ABIE53_004286at 462.102 kb on - strand, within ABIE53_004286at 462.102 kb on - strand, within ABIE53_004286at 462.102 kb on - strand, within ABIE53_004286at 462.102 kb on - strand, within ABIE53_004286at 462.102 kb on - strand, within ABIE53_004286at 462.257 kb on + strandat 462.257 kb on + strandat 462.258 kb on - strandat 462.258 kb on - strandat 462.258 kb on - strandat 462.411 kb on - strandat 462.411 kb on - strandat 462.446 kb on + strandat 462.447 kb on - strandat 462.465 kb on + strandat 462.465 kb on + strandat 462.465 kb on + strandat 462.465 kb on + strandat 462.466 kb on - strandat 462.511 kb on - strandat 462.511 kb on - strandat 462.523 kb on - strandat 462.658 kb on + strand, within ABIE53_004287at 462.659 kb on - strand, within ABIE53_004287at 462.659 kb on - strand, within ABIE53_004287at 462.659 kb on - strand, within ABIE53_004287at 462.659 kb on - strand, within ABIE53_004287at 462.659 kb on - strand, within ABIE53_004287at 462.659 kb on - strand, within ABIE53_004287at 462.695 kb on - strand, within ABIE53_004287at 462.695 kb on - strand, within ABIE53_004287at 462.695 kb on - strand, within ABIE53_004287at 462.696 kb on + strand, within ABIE53_004287at 462.696 kb on + strand, within ABIE53_004287at 462.696 kb on + strand, within ABIE53_004287at 462.697 kb on - strand, within ABIE53_004287at 462.817 kb on - strand, within ABIE53_004287at 462.889 kb on - strand, within ABIE53_004287at 462.939 kb on + strand, within ABIE53_004287at 462.939 kb on + strand, within ABIE53_004287at 462.939 kb on + strand, within ABIE53_004287at 462.993 kb on + strand, within ABIE53_004287at 462.993 kb on + strand, within ABIE53_004287at 462.993 kb on + strand, within ABIE53_004287at 462.993 kb on + strand, within ABIE53_004287at 462.994 kb on - strand, within ABIE53_004287at 462.994 kb on - strand, within ABIE53_004287at 462.994 kb on - strand, within ABIE53_004287at 462.994 kb on - strand, within ABIE53_004287at 463.005 kb on + strand, within ABIE53_004287at 463.006 kb on - strand, within ABIE53_004287at 463.215 kb on + strand, within ABIE53_004287at 463.215 kb on + strand, within ABIE53_004287at 463.215 kb on + strand, within ABIE53_004287at 463.216 kb on - strand, within ABIE53_004287at 463.216 kb on - strand, within ABIE53_004287at 463.216 kb on - strand, within ABIE53_004287at 463.216 kb on - strand, within ABIE53_004287at 463.580 kb on - strand, within ABIE53_004288at 463.656 kb on + strand, within ABIE53_004288at 463.656 kb on + strand, within ABIE53_004288at 463.680 kb on + strand, within ABIE53_004288at 463.680 kb on + strand, within ABIE53_004288at 463.680 kb on + strand, within ABIE53_004288at 463.680 kb on + strand, within ABIE53_004288at 463.681 kb on - strand, within ABIE53_004288at 463.681 kb on - strand, within ABIE53_004288at 463.681 kb on - strand, within ABIE53_004288at 463.681 kb on - strand, within ABIE53_004288at 463.681 kb on - strand, within ABIE53_004288at 463.740 kb on + strand, within ABIE53_004288at 463.741 kb on - strand, within ABIE53_004288at 463.741 kb on - strand, within ABIE53_004288at 463.741 kb on - strand, within ABIE53_004288at 463.765 kb on + strand, within ABIE53_004288at 463.815 kb on + strand, within ABIE53_004288at 463.816 kb on - strand, within ABIE53_004288at 463.816 kb on - strand, within ABIE53_004288at 464.046 kb on + strandat 464.047 kb on - strandat 464.102 kb on + strandat 464.102 kb on + strandat 464.214 kb on + strandat 464.214 kb on + strandat 464.214 kb on + strandat 464.215 kb on - strandat 464.215 kb on - strandat 464.262 kb on + strandat 464.262 kb on + strandat 464.262 kb on + strandat 464.262 kb on + strandat 464.263 kb on - strandat 464.263 kb on - strandat 464.264 kb on + strandat 464.264 kb on + strandat 464.264 kb on + strandat 464.264 kb on + strandat 464.264 kb on + strandat 464.264 kb on + strandat 464.265 kb on - strandat 464.265 kb on - strandat 464.265 kb on - strandat 464.265 kb on - strandat 464.265 kb on - strandat 464.344 kb on - strand, within ABIE53_004289at 464.354 kb on + strand, within ABIE53_004289

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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461,534 + ABIE53_004286 0.53 -1.8
461,534 + ABIE53_004286 0.53 +1.6
461,535 - ABIE53_004286 0.53 +1.6
461,535 - ABIE53_004286 0.53 -1.0
461,620 + ABIE53_004286 0.58 +0.7
461,620 + ABIE53_004286 0.58 -1.9
461,620 + ABIE53_004286 0.58 -2.0
461,669 + ABIE53_004286 0.61 +1.3
461,669 + ABIE53_004286 0.61 +1.4
461,670 - ABIE53_004286 0.61 -0.4
461,712 + ABIE53_004286 0.64 +1.7
461,810 + ABIE53_004286 0.70 -0.0
461,810 + ABIE53_004286 0.70 +1.6
461,810 + ABIE53_004286 0.70 -1.9
461,810 + ABIE53_004286 0.70 +0.9
461,810 + ABIE53_004286 0.70 +1.4
461,810 + ABIE53_004286 0.70 +2.2
461,810 + ABIE53_004286 0.70 +2.6
461,811 - ABIE53_004286 0.70 +1.4
461,811 - ABIE53_004286 0.70 -0.8
461,811 - ABIE53_004286 0.70 -1.2
461,811 - ABIE53_004286 0.70 -1.0
461,811 - ABIE53_004286 0.70 +1.4
461,811 - ABIE53_004286 0.70 +0.4
461,811 - ABIE53_004286 0.70 +1.6
461,811 - ABIE53_004286 0.70 -0.2
461,811 - ABIE53_004286 0.70 +1.6
461,811 - ABIE53_004286 0.70 -1.0
461,811 - ABIE53_004286 0.70 +0.9
461,811 - ABIE53_004286 0.70 -1.0
462,041 + ABIE53_004286 0.85 +0.4
462,041 + ABIE53_004286 0.85 +0.2
462,042 - ABIE53_004286 0.85 -1.0
462,097 + ABIE53_004286 0.88 -0.0
462,097 + ABIE53_004286 0.88 -1.0
462,098 - ABIE53_004286 0.88 +1.6
462,098 - ABIE53_004286 0.88 -2.2
462,098 - ABIE53_004286 0.88 -0.8
462,101 + ABIE53_004286 0.88 -0.0
462,101 + ABIE53_004286 0.88 -0.8
462,101 + ABIE53_004286 0.88 +2.0
462,101 + ABIE53_004286 0.88 -0.1
462,102 - ABIE53_004286 0.89 -1.2
462,102 - ABIE53_004286 0.89 -0.1
462,102 - ABIE53_004286 0.89 -2.5
462,102 - ABIE53_004286 0.89 -0.0
462,102 - ABIE53_004286 0.89 +0.1
462,102 - ABIE53_004286 0.89 +0.2
462,102 - ABIE53_004286 0.89 -2.2
462,257 + +0.4
462,257 + +1.3
462,258 - -1.0
462,258 - +0.6
462,258 - +2.8
462,411 - -1.6
462,411 - -1.0
462,446 + -2.1
462,447 - +0.6
462,465 + +0.4
462,465 + -0.4
462,465 + -2.0
462,465 + +0.6
462,466 - -1.8
462,511 - +1.5
462,511 - -0.4
462,523 - -1.2
462,658 + ABIE53_004287 0.21 -1.0
462,659 - ABIE53_004287 0.21 -0.0
462,659 - ABIE53_004287 0.21 -1.8
462,659 - ABIE53_004287 0.21 +3.5
462,659 - ABIE53_004287 0.21 -0.8
462,659 - ABIE53_004287 0.21 +3.9
462,659 - ABIE53_004287 0.21 +0.6
462,695 - ABIE53_004287 0.25 +1.8
462,695 - ABIE53_004287 0.25 -2.7
462,695 - ABIE53_004287 0.25 -1.6
462,696 + ABIE53_004287 0.25 -0.4
462,696 + ABIE53_004287 0.25 +1.6
462,696 + ABIE53_004287 0.25 -0.8
462,697 - ABIE53_004287 0.25 -2.3
462,817 - ABIE53_004287 0.38 -3.2
462,889 - ABIE53_004287 0.46 -3.3
462,939 + ABIE53_004287 0.52 -0.4
462,939 + ABIE53_004287 0.52 +0.3
462,939 + ABIE53_004287 0.52 -1.6
462,993 + ABIE53_004287 0.57 -0.4
462,993 + ABIE53_004287 0.57 -0.0
462,993 + ABIE53_004287 0.57 -0.4
462,993 + ABIE53_004287 0.57 +0.7
462,994 - ABIE53_004287 0.57 +1.6
462,994 - ABIE53_004287 0.57 -0.3
462,994 - ABIE53_004287 0.57 -4.1
462,994 - ABIE53_004287 0.57 +0.7
463,005 + ABIE53_004287 0.59 +3.7
463,006 - ABIE53_004287 0.59 +1.2
463,215 + ABIE53_004287 0.81 +2.0
463,215 + ABIE53_004287 0.81 -1.0
463,215 + ABIE53_004287 0.81 +1.0
463,216 - ABIE53_004287 0.81 -0.4
463,216 - ABIE53_004287 0.81 +0.2
463,216 - ABIE53_004287 0.81 -1.0
463,216 - ABIE53_004287 0.81 -0.0
463,580 - ABIE53_004288 0.19 +0.8
463,656 + ABIE53_004288 0.36 +2.2
463,656 + ABIE53_004288 0.36 -0.4
463,680 + ABIE53_004288 0.42 +0.8
463,680 + ABIE53_004288 0.42 -0.0
463,680 + ABIE53_004288 0.42 -2.0
463,680 + ABIE53_004288 0.42 -0.4
463,681 - ABIE53_004288 0.42 -1.9
463,681 - ABIE53_004288 0.42 +1.1
463,681 - ABIE53_004288 0.42 -0.0
463,681 - ABIE53_004288 0.42 -0.0
463,681 - ABIE53_004288 0.42 -0.1
463,740 + ABIE53_004288 0.55 -0.5
463,741 - ABIE53_004288 0.56 -0.4
463,741 - ABIE53_004288 0.56 -0.8
463,741 - ABIE53_004288 0.56 -2.1
463,765 + ABIE53_004288 0.61 -0.8
463,815 + ABIE53_004288 0.72 +0.2
463,816 - ABIE53_004288 0.73 +0.1
463,816 - ABIE53_004288 0.73 -1.0
464,046 + -2.0
464,047 - +1.1
464,102 + +1.6
464,102 + -1.0
464,214 + -0.0
464,214 + +1.6
464,214 + -2.2
464,215 - -1.1
464,215 - -2.1
464,262 + +0.4
464,262 + -1.6
464,262 + +2.7
464,262 + -0.3
464,263 - +1.2
464,263 - +0.6
464,264 + +0.6
464,264 + -1.4
464,264 + -3.0
464,264 + -0.8
464,264 + -2.6
464,264 + -0.5
464,265 - +2.4
464,265 - -1.8
464,265 - -1.6
464,265 - -2.0
464,265 - +0.0
464,344 - ABIE53_004289 0.14 +1.1
464,354 + ABIE53_004289 0.15 +1.6

Or see this region's nucleotide sequence