Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004185 and ABIE53_004186 overlap by 4 nucleotides ABIE53_004186 and ABIE53_004187 are separated by 16 nucleotides ABIE53_004187 and ABIE53_004188 overlap by 20 nucleotides ABIE53_004188 and ABIE53_004189 are separated by 76 nucleotides ABIE53_004189 and ABIE53_004190 are separated by 29 nucleotides ABIE53_004190 and ABIE53_004191 are separated by 139 nucleotides
ABIE53_004185: ABIE53_004185 - purine nucleosidase, at 359,728 to 360,693
_004185
ABIE53_004186: ABIE53_004186 - cytidine deaminase, at 360,690 to 361,079
_004186
ABIE53_004187: ABIE53_004187 - nucleoside permease NupC, at 361,096 to 361,236
_004187
ABIE53_004188: ABIE53_004188 - nucleoside transporter, at 361,217 to 362,374
_004188
ABIE53_004189: ABIE53_004189 - hypothetical protein, at 362,451 to 362,660
_004189
ABIE53_004190: ABIE53_004190 - hypothetical protein, at 362,690 to 362,935
_004190
ABIE53_004191: ABIE53_004191 - DNA-binding NarL/FixJ family response regulator, at 363,075 to 363,707
_004191
Position (kb) 361
362
363 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 360.247 kb on + strand, within ABIE53_004185 at 360.248 kb on - strand, within ABIE53_004185 at 360.672 kb on - strand at 360.693 kb on + strand at 360.693 kb on + strand at 360.697 kb on + strand at 360.698 kb on - strand at 360.698 kb on - strand at 360.698 kb on - strand at 360.698 kb on - strand at 360.912 kb on - strand, within ABIE53_004186 at 360.937 kb on + strand, within ABIE53_004186 at 360.937 kb on + strand, within ABIE53_004186 at 360.937 kb on + strand, within ABIE53_004186 at 360.937 kb on + strand, within ABIE53_004186 at 361.028 kb on - strand, within ABIE53_004186 at 361.028 kb on - strand, within ABIE53_004186 at 361.107 kb on + strand at 361.267 kb on + strand at 361.285 kb on - strand at 361.368 kb on - strand, within ABIE53_004188 at 361.770 kb on + strand, within ABIE53_004188 at 361.770 kb on + strand, within ABIE53_004188 at 361.771 kb on - strand, within ABIE53_004188 at 361.771 kb on - strand, within ABIE53_004188 at 361.798 kb on - strand, within ABIE53_004188 at 361.991 kb on + strand, within ABIE53_004188 at 361.992 kb on - strand, within ABIE53_004188 at 361.992 kb on - strand, within ABIE53_004188 at 362.022 kb on + strand, within ABIE53_004188 at 362.023 kb on - strand, within ABIE53_004188 at 362.025 kb on + strand, within ABIE53_004188 at 362.026 kb on - strand, within ABIE53_004188 at 362.105 kb on + strand, within ABIE53_004188 at 362.276 kb on + strand at 362.276 kb on + strand at 362.276 kb on + strand at 362.276 kb on + strand at 362.276 kb on + strand at 362.276 kb on + strand at 362.276 kb on + strand at 362.277 kb on - strand at 362.277 kb on - strand at 362.286 kb on - strand at 362.286 kb on - strand at 362.365 kb on + strand at 362.365 kb on + strand at 362.366 kb on - strand at 362.366 kb on - strand at 362.390 kb on + strand at 362.495 kb on + strand, within ABIE53_004189 at 362.590 kb on + strand, within ABIE53_004189 at 362.591 kb on - strand, within ABIE53_004189 at 362.622 kb on + strand, within ABIE53_004189 at 362.691 kb on + strand at 362.903 kb on - strand, within ABIE53_004190 at 362.936 kb on + strand at 362.937 kb on - strand at 363.062 kb on - strand at 363.295 kb on + strand, within ABIE53_004191
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 360,247 + ABIE53_004185 0.54 +1.2 360,248 - ABIE53_004185 0.54 -1.5 360,672 - +0.3 360,693 + +1.5 360,693 + +1.5 360,697 + -1.9 360,698 - +0.3 360,698 - -2.3 360,698 - +0.6 360,698 - -1.1 360,912 - ABIE53_004186 0.57 +1.4 360,937 + ABIE53_004186 0.63 +1.0 360,937 + ABIE53_004186 0.63 -0.8 360,937 + ABIE53_004186 0.63 -2.1 360,937 + ABIE53_004186 0.63 -0.1 361,028 - ABIE53_004186 0.87 -0.5 361,028 - ABIE53_004186 0.87 -3.2 361,107 + +0.6 361,267 + +1.5 361,285 - -1.1 361,368 - ABIE53_004188 0.13 -2.4 361,770 + ABIE53_004188 0.48 -0.9 361,770 + ABIE53_004188 0.48 +2.1 361,771 - ABIE53_004188 0.48 -3.0 361,771 - ABIE53_004188 0.48 +1.2 361,798 - ABIE53_004188 0.50 +1.7 361,991 + ABIE53_004188 0.67 -3.6 361,992 - ABIE53_004188 0.67 -0.4 361,992 - ABIE53_004188 0.67 -2.2 362,022 + ABIE53_004188 0.70 -1.1 362,023 - ABIE53_004188 0.70 +1.5 362,025 + ABIE53_004188 0.70 -2.7 362,026 - ABIE53_004188 0.70 -2.7 362,105 + ABIE53_004188 0.77 -2.1 362,276 + +2.3 362,276 + -3.6 362,276 + +2.3 362,276 + -0.5 362,276 + -1.6 362,276 + -0.8 362,276 + -1.1 362,277 - +0.2 362,277 - +1.2 362,286 - -1.1 362,286 - +1.9 362,365 + -1.3 362,365 + -1.8 362,366 - -1.5 362,366 - -2.1 362,390 + -0.5 362,495 + ABIE53_004189 0.21 +0.3 362,590 + ABIE53_004189 0.66 -2.8 362,591 - ABIE53_004189 0.67 +6.7 362,622 + ABIE53_004189 0.81 -2.1 362,691 + -0.8 362,903 - ABIE53_004190 0.87 +5.4 362,936 + -0.8 362,937 - -0.5 363,062 - -0.5 363,295 + ABIE53_004191 0.35 +0.5
Or see this region's nucleotide sequence