Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004173 and ABIE53_004174 are separated by 155 nucleotides ABIE53_004174 and ABIE53_004175 are separated by 89 nucleotides
ABIE53_004173: ABIE53_004173 - oligopeptide transport system ATP-binding protein, at 347,421 to 348,440
_004173
ABIE53_004174: ABIE53_004174 - hypothetical protein, at 348,596 to 350,158
_004174
ABIE53_004175: ABIE53_004175 - DNA-binding IclR family transcriptional regulator, at 350,248 to 351,138
_004175
Position (kb) 348
349
350
351 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 348.605 kb on - strand at 348.698 kb on + strand at 348.986 kb on + strand, within ABIE53_004174 at 349.010 kb on + strand, within ABIE53_004174 at 349.046 kb on + strand, within ABIE53_004174 at 349.205 kb on + strand, within ABIE53_004174 at 349.206 kb on - strand, within ABIE53_004174 at 349.206 kb on - strand, within ABIE53_004174 at 349.455 kb on - strand, within ABIE53_004174 at 349.502 kb on + strand, within ABIE53_004174 at 349.536 kb on - strand, within ABIE53_004174 at 349.538 kb on + strand, within ABIE53_004174 at 349.659 kb on - strand, within ABIE53_004174 at 349.661 kb on - strand, within ABIE53_004174 at 349.742 kb on + strand, within ABIE53_004174 at 349.742 kb on + strand, within ABIE53_004174 at 349.766 kb on + strand, within ABIE53_004174 at 349.766 kb on + strand, within ABIE53_004174 at 349.767 kb on - strand, within ABIE53_004174 at 349.767 kb on - strand, within ABIE53_004174 at 349.767 kb on - strand, within ABIE53_004174 at 349.793 kb on + strand, within ABIE53_004174 at 349.829 kb on + strand, within ABIE53_004174 at 349.832 kb on - strand, within ABIE53_004174 at 349.889 kb on + strand, within ABIE53_004174 at 349.889 kb on + strand, within ABIE53_004174 at 349.962 kb on - strand, within ABIE53_004174 at 350.024 kb on - strand at 350.182 kb on - strand at 350.182 kb on - strand at 350.182 kb on - strand at 350.271 kb on + strand at 350.509 kb on - strand, within ABIE53_004175 at 350.562 kb on - strand, within ABIE53_004175 at 350.562 kb on - strand, within ABIE53_004175 at 350.698 kb on - strand, within ABIE53_004175 at 350.831 kb on - strand, within ABIE53_004175 at 350.831 kb on - strand, within ABIE53_004175 at 350.835 kb on + strand, within ABIE53_004175 at 350.835 kb on + strand, within ABIE53_004175 at 350.835 kb on + strand, within ABIE53_004175 at 350.898 kb on - strand, within ABIE53_004175
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 348,605 - +1.7 348,698 + +1.3 348,986 + ABIE53_004174 0.25 -0.8 349,010 + ABIE53_004174 0.26 +3.1 349,046 + ABIE53_004174 0.29 +0.5 349,205 + ABIE53_004174 0.39 +1.0 349,206 - ABIE53_004174 0.39 -2.4 349,206 - ABIE53_004174 0.39 -0.9 349,455 - ABIE53_004174 0.55 -0.5 349,502 + ABIE53_004174 0.58 +3.0 349,536 - ABIE53_004174 0.60 +1.0 349,538 + ABIE53_004174 0.60 -1.3 349,659 - ABIE53_004174 0.68 +1.7 349,661 - ABIE53_004174 0.68 -0.5 349,742 + ABIE53_004174 0.73 -0.1 349,742 + ABIE53_004174 0.73 -0.5 349,766 + ABIE53_004174 0.75 -0.8 349,766 + ABIE53_004174 0.75 -1.8 349,767 - ABIE53_004174 0.75 +0.1 349,767 - ABIE53_004174 0.75 -0.1 349,767 - ABIE53_004174 0.75 +1.3 349,793 + ABIE53_004174 0.77 -0.1 349,829 + ABIE53_004174 0.79 -0.2 349,832 - ABIE53_004174 0.79 +2.8 349,889 + ABIE53_004174 0.83 +0.6 349,889 + ABIE53_004174 0.83 +1.2 349,962 - ABIE53_004174 0.87 -1.5 350,024 - -0.1 350,182 - -1.3 350,182 - -2.7 350,182 - -1.1 350,271 + +0.2 350,509 - ABIE53_004175 0.29 -0.8 350,562 - ABIE53_004175 0.35 +1.5 350,562 - ABIE53_004175 0.35 -2.6 350,698 - ABIE53_004175 0.51 +0.5 350,831 - ABIE53_004175 0.65 +2.8 350,831 - ABIE53_004175 0.65 -0.5 350,835 + ABIE53_004175 0.66 -0.5 350,835 + ABIE53_004175 0.66 -1.5 350,835 + ABIE53_004175 0.66 -0.9 350,898 - ABIE53_004175 0.73 +1.5
Or see this region's nucleotide sequence