Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003234

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,653,020	-		ABIE53_003233	0.26	+2.6
3,653,020	-		ABIE53_003233	0.26	+3.1
3,653,020	-		ABIE53_003233	0.26	-1.1
3,653,020	-		ABIE53_003233	0.26	+1.8
3,653,020	-		ABIE53_003233	0.26	-0.7
3,653,020	-		ABIE53_003233	0.26	-0.2
3,653,020	-		ABIE53_003233	0.26	+0.9
3,653,020	-		ABIE53_003233	0.26	+0.3
3,653,020	-		ABIE53_003233	0.26	+2.5
3,653,020	-		ABIE53_003233	0.26	+1.8
3,653,020	-		ABIE53_003233	0.26	+0.2
3,653,020	-		ABIE53_003233	0.26	+0.8
3,653,020	-		ABIE53_003233	0.26	+2.2
3,653,020	-		ABIE53_003233	0.26	+3.9
3,653,020	-		ABIE53_003233	0.26	+1.6
3,653,020	-		ABIE53_003233	0.26	+1.3
3,653,020	-		ABIE53_003233	0.26	+0.0
3,653,020	-		ABIE53_003233	0.26	-1.3
3,653,147	-		ABIE53_003233	0.40	-1.0
3,653,147	-		ABIE53_003233	0.40	+1.3
3,653,267	-		ABIE53_003233	0.53	+0.3
3,653,495	-		ABIE53_003233	0.78	-0.7
3,653,495	-		ABIE53_003233	0.78	+0.4
3,653,573	-		ABIE53_003233	0.86	-2.7
3,653,680	-				+3.8
3,653,680	-				+2.9
3,653,695	-				+0.8
3,653,695	-				-1.0
3,653,695	-				+1.4
3,653,695	-				-0.5
3,653,695	-				+1.8
3,653,695	-				+1.9
3,653,705	-				-2.7
3,653,705	-				+0.1
3,653,705	-				+0.5
3,653,705	-				+1.9
3,653,730	-				-1.3
3,653,730	-				-0.7
3,653,766	-				-1.7
3,653,766	-				+0.4
3,653,766	-				+0.3
3,653,766	-				-0.7
3,653,794	-				+0.8
3,653,794	-				-2.9
3,653,794	-				-1.4
3,653,794	-				+0.2
3,653,822	+				-0.3
3,653,822	+				+0.4
3,653,822	+				+0.3
3,653,822	+				-0.0
3,653,822	+				-1.5
3,653,822	+				-0.3
3,653,823	-				-0.3
3,653,823	-				-1.0
3,653,823	-				-0.3
3,653,823	-				-0.8
3,653,823	-				-2.7
3,653,878	-				+1.3
3,653,878	-				-2.3
3,653,994	+				-0.7
3,653,994	+				+1.1
3,653,994	+				+0.3
3,653,995	-				-0.2
3,653,995	-				-0.7
3,653,995	-				-1.5
3,654,123	+		ABIE53_003234	0.27	+0.6
3,654,124	-		ABIE53_003234	0.27	-1.7
3,654,124	-		ABIE53_003234	0.27	-2.5
3,654,124	-		ABIE53_003234	0.27	-3.1
3,654,124	-		ABIE53_003234	0.27	+1.1
3,654,149	+		ABIE53_003234	0.31	-2.0
3,654,149	+		ABIE53_003234	0.31	-0.1
3,654,149	+		ABIE53_003234	0.31	-1.5
3,654,149	+		ABIE53_003234	0.31	-0.7
3,654,149	+		ABIE53_003234	0.31	+0.3
3,654,149	+		ABIE53_003234	0.31	-2.3
3,654,150	-		ABIE53_003234	0.31	-0.6
3,654,150	-		ABIE53_003234	0.31	+0.3
3,654,150	-		ABIE53_003234	0.31	-1.3
3,654,276	-		ABIE53_003234	0.48	-2.1
3,654,408	+		ABIE53_003234	0.66	+2.2
3,654,408	+		ABIE53_003234	0.66	+1.7
3,654,408	+		ABIE53_003234	0.66	-1.7
3,654,435	+		ABIE53_003234	0.69	+0.2
3,654,435	+		ABIE53_003234	0.69	+1.3
3,654,435	+		ABIE53_003234	0.69	-0.3
3,654,435	+		ABIE53_003234	0.69	-2.1
3,654,435	+		ABIE53_003234	0.69	-2.4
3,654,435	+		ABIE53_003234	0.69	-2.4
3,654,435	+		ABIE53_003234	0.69	-1.3
3,654,436	-		ABIE53_003234	0.69	-2.6
3,654,436	-		ABIE53_003234	0.69	+0.6
3,654,436	-		ABIE53_003234	0.69	-0.7
3,654,436	-		ABIE53_003234	0.69	-0.7
3,654,436	-		ABIE53_003234	0.69	-3.3
3,654,436	-		ABIE53_003234	0.69	+0.6
3,654,436	-		ABIE53_003234	0.69	-2.5
3,654,465	+		ABIE53_003234	0.73	-4.2
3,654,466	-		ABIE53_003234	0.73	-3.2
3,654,466	-		ABIE53_003234	0.73	-2.5
3,654,466	-		ABIE53_003234	0.73	-3.3
3,654,557	-		ABIE53_003234	0.86	-1.0
3,654,557	-		ABIE53_003234	0.86	-2.1
3,654,557	-		ABIE53_003234	0.86	-2.0
3,654,557	-		ABIE53_003234	0.86	-2.6
3,654,557	-		ABIE53_003234	0.86	-0.7
3,654,596	-				-1.8
3,654,596	-				+0.7
3,654,649	-				-3.3
3,654,687	+				-1.3
3,654,687	+				+0.0
3,654,687	+				-2.1
3,654,688	-				-2.7
3,654,842	+		ABIE53_003235	0.29	-1.5
3,654,842	+		ABIE53_003235	0.29	-1.3
3,654,842	+		ABIE53_003235	0.29	+1.4
3,654,842	+		ABIE53_003235	0.29	-3.4
3,654,843	-		ABIE53_003235	0.29	+0.4
3,654,952	+		ABIE53_003235	0.46	-1.5
3,654,952	+		ABIE53_003235	0.46	-1.3
3,654,953	-		ABIE53_003235	0.46	-2.1
3,654,953	-		ABIE53_003235	0.46	-1.0
3,654,964	+		ABIE53_003235	0.48	-1.1
3,654,964	+		ABIE53_003235	0.48	-2.0
3,654,965	-		ABIE53_003235	0.48	-1.0
3,654,975	-		ABIE53_003235	0.49	+5.5
3,655,054	+		ABIE53_003235	0.62	-2.1
3,655,054	+		ABIE53_003235	0.62	-0.9
3,655,055	-		ABIE53_003235	0.62	-0.4
3,655,055	-		ABIE53_003235	0.62	-0.2
3,655,057	+		ABIE53_003235	0.62	-1.3
3,655,057	+		ABIE53_003235	0.62	-0.5
3,655,057	+		ABIE53_003235	0.62	+1.3
3,655,057	+		ABIE53_003235	0.62	+4.1
3,655,057	+		ABIE53_003235	0.62	-0.5
3,655,057	+		ABIE53_003235	0.62	-0.9
3,655,057	+		ABIE53_003235	0.62	+2.1
3,655,057	+		ABIE53_003235	0.62	-1.8
3,655,057	+		ABIE53_003235	0.62	-1.0
3,655,057	+		ABIE53_003235	0.62	+0.8
3,655,057	+		ABIE53_003235	0.62	-1.3
3,655,058	-		ABIE53_003235	0.62	+0.3
3,655,058	-		ABIE53_003235	0.62	-3.4
3,655,058	-		ABIE53_003235	0.62	-1.5
3,655,058	-		ABIE53_003235	0.62	-2.8
3,655,058	-		ABIE53_003235	0.62	-2.0
3,655,058	-		ABIE53_003235	0.62	-0.7
3,655,058	-		ABIE53_003235	0.62	-2.1
3,655,058	-		ABIE53_003235	0.62	-3.2
3,655,058	-		ABIE53_003235	0.62	+0.1
3,655,058	-		ABIE53_003235	0.62	+4.1
3,655,060	+		ABIE53_003235	0.62	-1.3
3,655,060	+		ABIE53_003235	0.62	+2.7
3,655,060	+		ABIE53_003235	0.62	-1.0
3,655,060	+		ABIE53_003235	0.62	-1.1
3,655,060	+		ABIE53_003235	0.62	-0.2
3,655,060	+		ABIE53_003235	0.62	+0.3
3,655,061	-		ABIE53_003235	0.63	-1.2
3,655,061	-		ABIE53_003235	0.63	+0.9
3,655,061	-		ABIE53_003235	0.63	-2.5
3,655,061	-		ABIE53_003235	0.63	-1.0
3,655,180	+		ABIE53_003235	0.81	+0.6
3,655,180	+		ABIE53_003235	0.81	+2.3
3,655,180	+		ABIE53_003235	0.81	-3.7
3,655,181	-		ABIE53_003235	0.81	-2.0
3,655,181	-		ABIE53_003235	0.81	-0.7
3,655,181	-		ABIE53_003235	0.81	-1.0
3,655,181	-		ABIE53_003235	0.81	+0.1
3,655,181	-		ABIE53_003235	0.81	-0.1
3,655,372	+				+1.3
3,655,372	+				-0.3
3,655,372	+				+0.4
3,655,372	+				+1.2
3,655,372	+				+1.2
3,655,372	+				+2.7
3,655,372	+				+0.5
3,655,373	-				+1.0
3,655,373	-				+0.3
3,655,404	+				-0.4
3,655,404	+				-0.8
3,655,404	+				-2.1
3,655,404	+				+1.2
3,655,404	+				-0.7
3,655,404	+				-1.5
3,655,404	+				-0.5
3,655,404	+				+1.6
3,655,404	+				+0.2
3,655,404	+				+0.3
3,655,404	+				-2.8
3,655,404	+				-1.5
3,655,404	+				-3.6
3,655,405	-				-1.3
3,655,405	-				-2.7
3,655,405	-				-2.6
3,655,405	-				-3.3
3,655,405	-				-3.5
3,655,405	-				-2.4
3,655,405	-				-1.5
3,655,405	-				-1.1
3,655,405	-				-0.3
3,655,405	-				-2.6
3,655,405	-				-0.7
3,655,405	-				+1.3
3,655,440	+		ABIE53_003236	0.11	-1.4
3,655,441	-		ABIE53_003236	0.12	-0.7
3,655,494	+		ABIE53_003236	0.16	-0.7
3,655,494	+		ABIE53_003236	0.16	+0.2
3,655,494	+		ABIE53_003236	0.16	-2.3
3,655,494	+		ABIE53_003236	0.16	+1.3
3,655,495	-		ABIE53_003236	0.16	+0.5
3,655,495	-		ABIE53_003236	0.16	-1.0
3,655,495	-		ABIE53_003236	0.16	+0.2
3,655,559	+		ABIE53_003236	0.21	-2.0
3,655,559	+		ABIE53_003236	0.21	-1.3
3,655,559	+		ABIE53_003236	0.21	+1.4
3,655,559	+		ABIE53_003236	0.21	-0.7
3,655,559	+		ABIE53_003236	0.21	+0.4
3,655,559	+		ABIE53_003236	0.21	+0.2
3,655,560	-		ABIE53_003236	0.21	+1.3
3,655,560	-		ABIE53_003236	0.21	+1.3
3,655,560	-		ABIE53_003236	0.21	-1.8
3,655,560	-		ABIE53_003236	0.21	+0.3
3,655,560	-		ABIE53_003236	0.21	-1.5
3,655,560	-		ABIE53_003236	0.21	-1.7
3,655,569	-		ABIE53_003236	0.22	+0.2
3,655,580	+		ABIE53_003236	0.23	-0.9
3,655,581	-		ABIE53_003236	0.23	-4.0