Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002827

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,194,748	+		ABIE53_002825	0.86	-1.2
3,194,749	-		ABIE53_002825	0.86	-2.2
3,194,749	-		ABIE53_002825	0.86	-1.2
3,194,763	+		ABIE53_002825	0.86	-3.6
3,194,764	-		ABIE53_002825	0.86	-2.4
3,194,793	+		ABIE53_002825	0.88	-0.6
3,194,931	+				-2.8
3,194,931	+				-2.8
3,194,931	+				+0.4
3,194,931	+				+0.4
3,194,961	+				-3.6
3,194,961	+				-2.9
3,194,961	+				-2.3
3,194,961	+				-2.8
3,194,961	+				-0.2
3,194,961	+				-2.4
3,194,962	-				-1.3
3,194,962	-				-1.8
3,194,962	-				-0.9
3,195,155	+		ABIE53_002826	0.13	+1.0
3,195,185	+		ABIE53_002826	0.19	+2.3
3,195,185	+		ABIE53_002826	0.19	+0.2
3,195,185	+		ABIE53_002826	0.19	-2.3
3,195,383	+		ABIE53_002826	0.58	-0.6
3,195,384	-		ABIE53_002826	0.58	-1.9
3,195,384	-		ABIE53_002826	0.58	-2.1
3,195,384	-		ABIE53_002826	0.58	-1.4
3,195,443	+		ABIE53_002826	0.70	+0.0
3,195,443	+		ABIE53_002826	0.70	-0.6
3,195,443	+		ABIE53_002826	0.70	-1.4
3,195,443	+		ABIE53_002826	0.70	-1.2
3,195,443	+		ABIE53_002826	0.70	+0.7
3,195,443	+		ABIE53_002826	0.70	+0.4
3,195,443	+		ABIE53_002826	0.70	-3.2
3,195,443	+		ABIE53_002826	0.70	-1.8
3,195,444	-		ABIE53_002826	0.70	+0.5
3,195,444	-		ABIE53_002826	0.70	-2.1
3,195,444	-		ABIE53_002826	0.70	+0.1
3,195,444	-		ABIE53_002826	0.70	-1.2
3,195,449	+		ABIE53_002826	0.71	-0.1
3,195,450	-		ABIE53_002826	0.71	+1.1
3,195,450	-		ABIE53_002826	0.71	+2.6
3,195,480	+		ABIE53_002826	0.77	-1.2
3,195,480	+		ABIE53_002826	0.77	-2.2
3,195,504	-		ABIE53_002826	0.82	+0.4
3,195,575	+				-0.0
3,195,576	-				+3.0
3,195,576	-				-1.2
3,195,576	-				-3.8
3,195,630	+				-2.3
3,195,630	+				+0.4
3,195,630	+				+2.0
3,195,662	+				+1.4
3,195,663	-				+1.0
3,195,787	+				-0.6
3,195,787	+				+0.3
3,195,787	+				-1.6
3,195,787	+				+0.2
3,195,788	-				-2.6
3,195,788	-				+0.8
3,195,788	-				-0.2
3,195,788	-				-0.9
3,195,788	-				-1.1
3,195,788	-				+1.4
3,195,789	+				-2.4
3,195,789	+				+0.1
3,195,790	-				-0.8
3,195,790	-				-1.6
3,195,790	-				-1.9
3,195,790	-				-2.5
3,195,790	-				+1.4
3,195,790	-				-0.2
3,195,790	-				-1.2
3,195,790	-				-3.9
3,195,847	-		ABIE53_002827	0.12	-3.1
3,195,847	-		ABIE53_002827	0.12	-3.1
3,195,886	+		ABIE53_002827	0.15	+1.1
3,195,886	+		ABIE53_002827	0.15	-0.8
3,195,886	+		ABIE53_002827	0.15	-2.4
3,195,886	+		ABIE53_002827	0.15	-2.2
3,195,886	+		ABIE53_002827	0.15	+1.4
3,195,886	+		ABIE53_002827	0.15	+0.4
3,195,886	+		ABIE53_002827	0.15	+2.0
3,195,887	-		ABIE53_002827	0.15	-0.3
3,195,887	-		ABIE53_002827	0.15	-0.6
3,195,887	-		ABIE53_002827	0.15	-0.2
3,195,887	-		ABIE53_002827	0.15	-0.2
3,195,889	-		ABIE53_002827	0.15	+0.6
3,195,904	+		ABIE53_002827	0.16	+0.7
3,195,904	+		ABIE53_002827	0.16	+0.3
3,195,905	-		ABIE53_002827	0.16	-0.9
3,195,905	-		ABIE53_002827	0.16	+0.3
3,195,915	+		ABIE53_002827	0.17	-0.6
3,195,915	+		ABIE53_002827	0.17	-3.1
3,195,915	+		ABIE53_002827	0.17	-1.4
3,195,916	-		ABIE53_002827	0.17	-2.1
3,195,923	+		ABIE53_002827	0.17	+1.4
3,195,923	+		ABIE53_002827	0.17	-0.2
3,195,923	+		ABIE53_002827	0.17	-1.8
3,195,992	+		ABIE53_002827	0.23	-1.4
3,195,992	+		ABIE53_002827	0.23	+0.4
3,195,992	+		ABIE53_002827	0.23	-2.8
3,195,993	-		ABIE53_002827	0.23	-1.6
3,195,993	-		ABIE53_002827	0.23	-0.2
3,195,993	-		ABIE53_002827	0.23	-0.6
3,196,082	-		ABIE53_002827	0.29	-1.6
3,196,082	-		ABIE53_002827	0.29	+1.6
3,196,431	+		ABIE53_002827	0.56	-0.2
3,196,432	-		ABIE53_002827	0.56	-2.4
3,196,432	-		ABIE53_002827	0.56	+0.6
3,196,432	-		ABIE53_002827	0.56	+2.7
3,196,539	+		ABIE53_002827	0.64	+1.4
3,196,765	+		ABIE53_002827	0.81	-0.6
3,196,765	+		ABIE53_002827	0.81	-1.3
3,196,887	+				+0.4
3,196,887	+				-0.6
3,196,887	+				-0.2
3,196,887	+				-4.0
3,196,887	+				-0.2
3,196,888	-				-0.6
3,196,888	-				+2.6
3,196,888	-				+4.2
3,196,888	-				+0.9
3,196,888	-				+1.5
3,196,899	+				-0.7
3,196,900	-				+0.4
3,196,987	+				+0.9
3,196,987	+				+0.4
3,196,987	+				+0.5
3,196,988	-				-0.2
3,196,988	-				-0.9
3,196,988	-				-1.6
3,196,988	-				-0.9
3,196,988	-				-0.3
3,197,056	-				-3.7
3,197,056	-				+1.4
3,197,056	-				+2.2
3,197,056	-				-0.4
3,197,100	+				-0.9
3,197,100	+				-0.6
3,197,107	-				-1.2
3,197,107	-				-0.6
3,197,418	+		ABIE53_002828	0.39	-0.2
3,197,418	+		ABIE53_002828	0.39	-1.6
3,197,419	-		ABIE53_002828	0.39	-2.5
3,197,419	-		ABIE53_002828	0.39	-0.3
3,197,419	-		ABIE53_002828	0.39	-0.9
3,197,903	-				-3.6
3,197,903	-				-1.4
3,197,903	-				-1.9
3,197,903	-				-0.6
3,197,904	+				-1.1
3,197,904	+				-0.9
3,197,904	+				+0.8
3,197,905	-				+4.5
3,197,905	-				+1.4
3,197,905	-				-1.4
3,197,905	-				+1.4
3,197,905	-				-1.6
3,197,905	-				-3.0
3,197,905	-				+2.1
3,198,004	+				-2.5
3,198,004	+				-1.4
3,198,004	+				-0.6
3,198,004	+				-0.6