Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3406

Experiment: Ammonium chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N)
3,583,166	+				-0.6
3,583,166	+				+0.2
3,583,184	+				+0.3
3,583,222	+				+1.7
3,583,227	+				+0.9
3,583,243	-		Dshi_3405	0.11	-0.6
3,583,293	-		Dshi_3405	0.17	-0.4
3,583,308	-		Dshi_3405	0.19	-0.9
3,583,310	+		Dshi_3405	0.19	+1.3
3,583,330	-		Dshi_3405	0.22	-0.7
3,583,334	+		Dshi_3405	0.23	-0.4
3,583,334	+		Dshi_3405	0.23	+0.2
3,583,334	+		Dshi_3405	0.23	-0.4
3,583,342	-		Dshi_3405	0.24	+0.1
3,583,365	+		Dshi_3405	0.27	+0.7
3,583,391	+		Dshi_3405	0.30	+0.1
3,583,446	-		Dshi_3405	0.37	-0.3
3,583,450	+		Dshi_3405	0.38	-0.4
3,583,452	-		Dshi_3405	0.38	-0.3
3,583,458	-		Dshi_3405	0.39	+0.8
3,583,458	-		Dshi_3405	0.39	-0.5
3,583,530	-		Dshi_3405	0.48	-1.0
3,583,540	+		Dshi_3405	0.50	+1.1
3,583,541	+		Dshi_3405	0.50	+0.5
3,583,551	+		Dshi_3405	0.51	-0.6
3,583,551	+		Dshi_3405	0.51	+0.3
3,583,554	-		Dshi_3405	0.51	-0.0
3,583,569	-		Dshi_3405	0.53	-0.1
3,583,589	-		Dshi_3405	0.56	+0.3
3,583,631	+		Dshi_3405	0.62	+0.2
3,583,631	+		Dshi_3405	0.62	-0.5
3,583,636	+		Dshi_3405	0.62	+0.0
3,583,636	+		Dshi_3405	0.62	-0.4
3,583,636	+		Dshi_3405	0.62	-0.7
3,583,636	+		Dshi_3405	0.62	+0.3
3,583,636	+		Dshi_3405	0.62	+1.5
3,583,636	+		Dshi_3405	0.62	+0.6
3,583,639	-		Dshi_3405	0.63	+0.1
3,583,639	-		Dshi_3405	0.63	-1.6
3,583,644	-		Dshi_3405	0.63	+1.5
3,583,644	-		Dshi_3405	0.63	+0.5
3,583,644	-		Dshi_3405	0.63	+0.6
3,583,644	-		Dshi_3405	0.63	-1.2
3,583,644	-		Dshi_3405	0.63	+0.7
3,583,647	-		Dshi_3405	0.64	+1.3
3,583,673	-		Dshi_3405	0.67	+0.0
3,583,703	+		Dshi_3405	0.71	+0.3
3,583,711	-		Dshi_3405	0.72	+0.4
3,583,711	-		Dshi_3405	0.72	-0.8
3,583,713	-		Dshi_3405	0.72	-1.9
3,583,714	+		Dshi_3405	0.72	+0.1
3,583,724	-		Dshi_3405	0.74	+0.6
3,583,738	+		Dshi_3405	0.76	-0.1
3,583,746	-		Dshi_3405	0.77	-1.3
3,583,801	+		Dshi_3405	0.84	-0.3
3,583,824	-		Dshi_3405	0.87	-1.0
3,583,825	+		Dshi_3405	0.87	-0.3
3,583,865	+				-1.9
3,583,873	-				+1.3
3,583,918	+				-0.1
3,583,932	+				+0.7
3,583,932	+				-0.2
3,583,937	+				+1.9
3,583,937	+				+0.2
3,583,937	+				-0.3
3,583,945	-				+0.1
3,583,945	-				+0.4
3,583,945	-				+0.7
3,583,945	-				+0.3
3,583,946	-				-0.2
3,583,951	+				+0.9
3,583,955	-				-2.6
3,583,959	+				-0.6
3,583,963	-				-0.0
3,583,963	-				+0.3
3,583,992	+				-0.3
3,583,992	+				+1.6
3,583,992	+				-0.4
3,583,999	-				-0.3
3,584,000	-				-0.1
3,584,000	-				+0.7
3,584,004	-				-0.2
3,584,004	-				-0.3
3,584,007	+				+1.1
3,584,038	+				+0.2
3,584,042	+				+0.0
3,584,072	+				-2.3
3,584,072	+				-0.7
3,584,080	-				-0.3
3,584,094	-				-1.5
3,584,095	+				-0.4
3,584,095	-				-1.3
3,584,095	-				-1.1
3,584,105	+				-0.8
3,584,105	+				+0.1
3,584,105	+				-0.3
3,584,105	+				+0.3
3,584,105	+				+0.9
3,584,113	+				-0.8
3,584,113	+				-0.5
3,584,113	+				+0.0
3,584,113	-				-0.3
3,584,113	-				+0.0
3,584,121	-				+0.6
3,584,121	-				-0.5
3,584,129	+				-0.3
3,584,129	+				+0.3
3,584,129	+				-0.0
3,584,130	+				-0.3
3,584,130	+				-0.1
3,584,137	-				-0.5
3,584,137	-				-0.7
3,584,142	-				-1.2
3,584,167	+				-1.3
3,584,167	+				-0.3
3,584,168	+				-0.5
3,584,169	-				-0.3
3,584,183	+				-0.5
3,584,183	+				+0.3
3,584,183	+				+0.1
3,584,183	+				-1.6
3,584,183	+				+0.1
3,584,188	+				-0.1
3,584,188	+				-0.3
3,584,191	-				+1.3
3,584,191	-				-0.5
3,584,241	-		Dshi_3406	0.18	-2.4
3,584,286	+		Dshi_3406	0.26	-0.8
3,584,289	+		Dshi_3406	0.26	-0.5
3,584,294	+		Dshi_3406	0.27	-1.0
3,584,300	-		Dshi_3406	0.28	-1.3
3,584,321	-		Dshi_3406	0.32	-1.3
3,584,336	+		Dshi_3406	0.35	-0.4
3,584,336	+		Dshi_3406	0.35	+0.3
3,584,336	+		Dshi_3406	0.35	-2.3
3,584,336	+		Dshi_3406	0.35	+0.1
3,584,336	+		Dshi_3406	0.35	-1.0
3,584,341	+		Dshi_3406	0.36	+0.2
3,584,344	-		Dshi_3406	0.36	+0.1
3,584,349	+		Dshi_3406	0.37	+0.3
3,584,349	-		Dshi_3406	0.37	-2.3
3,584,349	-		Dshi_3406	0.37	+0.0
3,584,349	-		Dshi_3406	0.37	-0.1
3,584,362	-		Dshi_3406	0.40	-0.7
3,584,365	+		Dshi_3406	0.40	-2.3
3,584,365	+		Dshi_3406	0.40	-0.5
3,584,367	-		Dshi_3406	0.41	-0.7
3,584,367	-		Dshi_3406	0.41	-0.2
3,584,367	-		Dshi_3406	0.41	+0.1
3,584,369	+		Dshi_3406	0.41	+0.2
3,584,462	+		Dshi_3406	0.58	-0.0
3,584,475	+		Dshi_3406	0.60	+0.6
3,584,478	-		Dshi_3406	0.61	-2.0
3,584,485	+		Dshi_3406	0.62	-0.3
3,584,493	-		Dshi_3406	0.64	+0.5
3,584,493	-		Dshi_3406	0.64	-0.3
3,584,493	-		Dshi_3406	0.64	-1.3
3,584,493	-		Dshi_3406	0.64	-1.5
3,584,543	+		Dshi_3406	0.73	-0.1
3,584,583	-		Dshi_3406	0.80	-1.2
3,584,767	+				-1.4
3,584,775	+				-1.8
3,584,775	-				+0.2
3,584,783	-				-0.1
3,584,783	-				-0.6
3,584,783	-				-0.1
3,584,783	-				+0.9
3,584,799	+				-2.0
3,584,807	-				+0.1
3,584,854	-				+1.2
3,584,883	+				+0.3
3,584,886	-				-0.4
3,584,915	+				+0.1
3,584,919	+				-0.4
3,584,928	+				-0.2
3,584,940	-				-2.3
3,584,967	+				-0.4
3,584,969	+				+0.3
3,584,969	+				-0.1
3,584,969	+				-0.1
3,584,977	-				-0.3
3,584,987	-				+1.0
3,585,034	+				+0.1
3,585,053	-				-2.1
3,585,076	+		Dshi_3407	0.11	-1.3
3,585,076	+		Dshi_3407	0.11	+1.0
3,585,081	-		Dshi_3407	0.11	+0.5
3,585,137	+		Dshi_3407	0.14	-0.3
3,585,145	-		Dshi_3407	0.14	+0.8
3,585,145	-		Dshi_3407	0.14	-0.2
3,585,150	-		Dshi_3407	0.14	+0.2
3,585,158	+		Dshi_3407	0.15	+1.4
3,585,166	-		Dshi_3407	0.15	+0.5
3,585,179	+		Dshi_3407	0.16	-0.5
3,585,190	+		Dshi_3407	0.16	-0.3
3,585,241	-		Dshi_3407	0.19	+1.0
3,585,278	-		Dshi_3407	0.20	+0.2
3,585,295	+		Dshi_3407	0.21	-1.1
3,585,324	-		Dshi_3407	0.23	+0.2
3,585,324	-		Dshi_3407	0.23	+0.2
3,585,348	-		Dshi_3407	0.24	+0.0
3,585,349	-		Dshi_3407	0.24	-0.1
3,585,355	+		Dshi_3407	0.24	+0.4
3,585,363	-		Dshi_3407	0.24	+0.9
3,585,404	+		Dshi_3407	0.26	+0.2
3,585,407	+		Dshi_3407	0.27	-2.4
3,585,412	+		Dshi_3407	0.27	+0.1
3,585,412	-		Dshi_3407	0.27	-0.2
3,585,440	-		Dshi_3407	0.28	-0.1
3,585,515	+		Dshi_3407	0.32	+0.3
3,585,554	-		Dshi_3407	0.33	-0.7
3,585,572	-		Dshi_3407	0.34	+0.8
3,585,576	-		Dshi_3407	0.35	+1.3
3,585,605	+		Dshi_3407	0.36	+0.5
3,585,672	-		Dshi_3407	0.39	-0.6