Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0889 and Dshi_0890 are separated by 106 nucleotides Dshi_0890 and Dshi_0891 are separated by 93 nucleotides
Dshi_0889: Dshi_0889 - alanine racemase domain protein (RefSeq), at 904,311 to 905,474
_0889
Dshi_0890: Dshi_0890 - Ornithine cyclodeaminase (RefSeq), at 905,581 to 906,573
_0890
Dshi_0891: Dshi_0891 - cysteine synthase A (RefSeq), at 906,667 to 907,749
_0891
Position (kb) 905
906
907 Strain fitness (log2 ratio) -2
-1
0
1 at 904.592 kb on - strand, within Dshi_0889 at 904.623 kb on + strand, within Dshi_0889 at 905.066 kb on + strand, within Dshi_0889 at 905.067 kb on + strand, within Dshi_0889 at 905.077 kb on + strand, within Dshi_0889 at 905.085 kb on - strand, within Dshi_0889 at 905.218 kb on + strand, within Dshi_0889 at 905.313 kb on - strand, within Dshi_0889 at 905.356 kb on - strand, within Dshi_0889 at 905.402 kb on - strand at 905.402 kb on - strand at 905.413 kb on - strand at 905.473 kb on - strand at 905.486 kb on + strand at 905.530 kb on + strand at 905.576 kb on + strand at 905.653 kb on + strand at 905.708 kb on - strand, within Dshi_0890 at 905.715 kb on - strand, within Dshi_0890 at 905.802 kb on - strand, within Dshi_0890 at 905.808 kb on + strand, within Dshi_0890 at 905.859 kb on + strand, within Dshi_0890 at 905.867 kb on - strand, within Dshi_0890 at 905.948 kb on + strand, within Dshi_0890 at 905.954 kb on - strand, within Dshi_0890 at 905.956 kb on - strand, within Dshi_0890 at 905.968 kb on - strand, within Dshi_0890 at 906.003 kb on + strand, within Dshi_0890 at 906.013 kb on + strand, within Dshi_0890 at 906.026 kb on + strand, within Dshi_0890 at 906.026 kb on - strand, within Dshi_0890 at 906.245 kb on + strand, within Dshi_0890 at 906.258 kb on - strand, within Dshi_0890 at 906.258 kb on - strand, within Dshi_0890 at 906.258 kb on - strand, within Dshi_0890 at 906.281 kb on - strand, within Dshi_0890 at 906.324 kb on - strand, within Dshi_0890 at 906.468 kb on - strand, within Dshi_0890 at 906.501 kb on - strand at 906.512 kb on - strand at 906.747 kb on - strand at 906.755 kb on + strand at 906.776 kb on - strand, within Dshi_0891 at 907.089 kb on + strand, within Dshi_0891 at 907.097 kb on - strand, within Dshi_0891 at 907.187 kb on - strand, within Dshi_0891 at 907.189 kb on + strand, within Dshi_0891 at 907.194 kb on + strand, within Dshi_0891 at 907.244 kb on + strand, within Dshi_0891 at 907.310 kb on + strand, within Dshi_0891 at 907.323 kb on - strand, within Dshi_0891 at 907.400 kb on + strand, within Dshi_0891 at 907.448 kb on + strand, within Dshi_0891 at 907.455 kb on - strand, within Dshi_0891 at 907.468 kb on + strand, within Dshi_0891 at 907.468 kb on + strand, within Dshi_0891 at 907.477 kb on - strand, within Dshi_0891 at 907.526 kb on + strand, within Dshi_0891
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 904,592 - Dshi_0889 0.24 -0.4 904,623 + Dshi_0889 0.27 -0.4 905,066 + Dshi_0889 0.65 +0.2 905,067 + Dshi_0889 0.65 +1.5 905,077 + Dshi_0889 0.66 -0.2 905,085 - Dshi_0889 0.66 +0.2 905,218 + Dshi_0889 0.78 +0.6 905,313 - Dshi_0889 0.86 -0.2 905,356 - Dshi_0889 0.90 -0.2 905,402 - +1.3 905,402 - -0.2 905,413 - -0.2 905,473 - -0.4 905,486 + -0.2 905,530 + +0.5 905,576 + +0.5 905,653 + +0.7 905,708 - Dshi_0890 0.13 -0.2 905,715 - Dshi_0890 0.13 -0.6 905,802 - Dshi_0890 0.22 -1.2 905,808 + Dshi_0890 0.23 -0.4 905,859 + Dshi_0890 0.28 -1.1 905,867 - Dshi_0890 0.29 -0.3 905,948 + Dshi_0890 0.37 +0.9 905,954 - Dshi_0890 0.38 -0.6 905,956 - Dshi_0890 0.38 +0.1 905,968 - Dshi_0890 0.39 +0.2 906,003 + Dshi_0890 0.42 -0.6 906,013 + Dshi_0890 0.44 +0.1 906,026 + Dshi_0890 0.45 +1.5 906,026 - Dshi_0890 0.45 -0.5 906,245 + Dshi_0890 0.67 -0.0 906,258 - Dshi_0890 0.68 -0.8 906,258 - Dshi_0890 0.68 +0.3 906,258 - Dshi_0890 0.68 -0.6 906,281 - Dshi_0890 0.70 -1.8 906,324 - Dshi_0890 0.75 -0.1 906,468 - Dshi_0890 0.89 -0.8 906,501 - +0.2 906,512 - -1.0 906,747 - -0.3 906,755 + -1.2 906,776 - Dshi_0891 0.10 -0.9 907,089 + Dshi_0891 0.39 -0.3 907,097 - Dshi_0891 0.40 -0.7 907,187 - Dshi_0891 0.48 -0.6 907,189 + Dshi_0891 0.48 -0.8 907,194 + Dshi_0891 0.49 -0.1 907,244 + Dshi_0891 0.53 -0.2 907,310 + Dshi_0891 0.59 -0.8 907,323 - Dshi_0891 0.61 -1.2 907,400 + Dshi_0891 0.68 +0.5 907,448 + Dshi_0891 0.72 -1.2 907,455 - Dshi_0891 0.73 -0.2 907,468 + Dshi_0891 0.74 -0.7 907,468 + Dshi_0891 0.74 -0.0 907,477 - Dshi_0891 0.75 -0.1 907,526 + Dshi_0891 0.79 +0.0
Or see this region's nucleotide sequence