Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0558

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0556 and Dshi_0557 are separated by 50 nucleotidesDshi_0557 and Dshi_0558 are separated by 126 nucleotidesDshi_0558 and Dshi_0559 are separated by 446 nucleotidesDshi_0559 and Dshi_0560 overlap by 4 nucleotides Dshi_0556: Dshi_0556 - GreA/GreB family elongation factor (RefSeq), at 544,002 to 544,445 _0556 Dshi_0557: Dshi_0557 - GreA/GreB family elongation factor (RefSeq), at 544,496 to 544,927 _0557 Dshi_0558: Dshi_0558 - D-amino-acid dehydrogenase (RefSeq), at 545,054 to 546,313 _0558 Dshi_0559: Dshi_0559 - protein of unknown function DUF1636 (RefSeq), at 546,760 to 547,167 _0559 Dshi_0560: Dshi_0560 - ABC transporter related (RefSeq), at 547,164 to 547,937 _0560 Position (kb) 545 546 547Strain fitness (log2 ratio) -2 -1 0 1 2at 544.058 kb on + strand, within Dshi_0556at 544.149 kb on - strand, within Dshi_0556at 544.157 kb on - strand, within Dshi_0556at 544.178 kb on + strand, within Dshi_0556at 544.205 kb on + strand, within Dshi_0556at 544.261 kb on - strand, within Dshi_0556at 544.265 kb on + strand, within Dshi_0556at 544.283 kb on + strand, within Dshi_0556at 544.347 kb on + strand, within Dshi_0556at 544.347 kb on + strand, within Dshi_0556at 544.355 kb on - strand, within Dshi_0556at 544.357 kb on + strand, within Dshi_0556at 544.357 kb on - strand, within Dshi_0556at 544.365 kb on - strand, within Dshi_0556at 544.365 kb on - strand, within Dshi_0556at 544.371 kb on - strand, within Dshi_0556at 544.380 kb on - strand, within Dshi_0556at 544.386 kb on - strand, within Dshi_0556at 544.386 kb on - strand, within Dshi_0556at 544.411 kb on + strandat 544.439 kb on + strandat 544.440 kb on + strandat 544.452 kb on - strandat 544.498 kb on + strandat 544.506 kb on - strandat 544.579 kb on + strand, within Dshi_0557at 544.584 kb on - strand, within Dshi_0557at 544.604 kb on - strand, within Dshi_0557at 544.667 kb on + strand, within Dshi_0557at 544.676 kb on - strand, within Dshi_0557at 544.702 kb on - strand, within Dshi_0557at 544.709 kb on - strand, within Dshi_0557at 544.715 kb on - strand, within Dshi_0557at 544.719 kb on - strand, within Dshi_0557at 544.771 kb on + strand, within Dshi_0557at 544.823 kb on + strand, within Dshi_0557at 544.825 kb on + strand, within Dshi_0557at 544.831 kb on - strand, within Dshi_0557at 544.831 kb on - strand, within Dshi_0557at 544.855 kb on - strand, within Dshi_0557at 544.898 kb on - strandat 544.904 kb on + strandat 544.977 kb on - strandat 545.121 kb on + strandat 545.154 kb on + strandat 545.161 kb on - strandat 545.161 kb on - strandat 545.162 kb on - strandat 545.186 kb on + strand, within Dshi_0558at 545.202 kb on + strand, within Dshi_0558at 545.275 kb on + strand, within Dshi_0558at 545.298 kb on - strand, within Dshi_0558at 545.338 kb on + strand, within Dshi_0558at 545.353 kb on - strand, within Dshi_0558at 545.353 kb on - strand, within Dshi_0558at 545.353 kb on - strand, within Dshi_0558at 545.384 kb on - strand, within Dshi_0558at 545.389 kb on - strand, within Dshi_0558at 545.458 kb on - strand, within Dshi_0558at 545.489 kb on - strand, within Dshi_0558at 545.489 kb on - strand, within Dshi_0558at 545.491 kb on + strand, within Dshi_0558at 545.491 kb on - strand, within Dshi_0558at 545.500 kb on + strand, within Dshi_0558at 545.501 kb on + strand, within Dshi_0558at 545.508 kb on - strand, within Dshi_0558at 545.508 kb on - strand, within Dshi_0558at 545.508 kb on - strand, within Dshi_0558at 545.526 kb on - strand, within Dshi_0558at 545.549 kb on - strand, within Dshi_0558at 545.582 kb on - strand, within Dshi_0558at 545.587 kb on - strand, within Dshi_0558at 545.627 kb on - strand, within Dshi_0558at 545.631 kb on + strand, within Dshi_0558at 545.631 kb on + strand, within Dshi_0558at 545.677 kb on - strand, within Dshi_0558at 545.704 kb on + strand, within Dshi_0558at 545.712 kb on - strand, within Dshi_0558at 545.714 kb on + strand, within Dshi_0558at 545.714 kb on + strand, within Dshi_0558at 545.729 kb on - strand, within Dshi_0558at 545.760 kb on - strand, within Dshi_0558at 545.760 kb on - strand, within Dshi_0558at 545.798 kb on + strand, within Dshi_0558at 545.799 kb on + strand, within Dshi_0558at 545.804 kb on + strand, within Dshi_0558at 545.806 kb on - strand, within Dshi_0558at 545.810 kb on + strand, within Dshi_0558at 545.816 kb on - strand, within Dshi_0558at 545.878 kb on + strand, within Dshi_0558at 545.954 kb on + strand, within Dshi_0558at 546.100 kb on + strand, within Dshi_0558at 546.176 kb on - strand, within Dshi_0558at 546.213 kb on - strandat 546.258 kb on - strandat 546.294 kb on - strandat 546.340 kb on - strandat 546.340 kb on - strandat 546.361 kb on + strandat 546.361 kb on + strandat 546.369 kb on - strandat 546.381 kb on + strandat 546.381 kb on + strandat 546.389 kb on - strandat 546.422 kb on + strandat 546.458 kb on + strandat 546.527 kb on + strandat 546.527 kb on + strandat 546.556 kb on + strandat 546.556 kb on + strandat 546.564 kb on - strandat 546.564 kb on - strandat 546.589 kb on - strandat 546.589 kb on - strandat 546.605 kb on + strandat 546.613 kb on - strandat 546.730 kb on - strandat 546.753 kb on + strandat 546.839 kb on + strand, within Dshi_0559at 546.842 kb on - strand, within Dshi_0559at 546.847 kb on - strand, within Dshi_0559at 546.847 kb on - strand, within Dshi_0559at 546.878 kb on - strand, within Dshi_0559at 546.924 kb on - strand, within Dshi_0559at 546.978 kb on + strand, within Dshi_0559at 546.998 kb on - strand, within Dshi_0559at 547.017 kb on - strand, within Dshi_0559at 547.045 kb on - strand, within Dshi_0559at 547.111 kb on + strand, within Dshi_0559at 547.114 kb on - strand, within Dshi_0559at 547.119 kb on - strand, within Dshi_0559at 547.240 kb on + strandat 547.253 kb on + strand, within Dshi_0560at 547.297 kb on + strand, within Dshi_0560at 547.305 kb on - strand, within Dshi_0560

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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544,058 + Dshi_0556 0.13 -1.2
544,149 - Dshi_0556 0.33 -0.9
544,157 - Dshi_0556 0.35 +0.6
544,178 + Dshi_0556 0.40 -1.1
544,205 + Dshi_0556 0.46 -0.9
544,261 - Dshi_0556 0.58 +0.9
544,265 + Dshi_0556 0.59 -1.1
544,283 + Dshi_0556 0.63 -0.1
544,347 + Dshi_0556 0.78 -0.9
544,347 + Dshi_0556 0.78 -1.6
544,355 - Dshi_0556 0.80 +0.8
544,357 + Dshi_0556 0.80 -0.8
544,357 - Dshi_0556 0.80 +0.9
544,365 - Dshi_0556 0.82 +1.5
544,365 - Dshi_0556 0.82 +2.2
544,371 - Dshi_0556 0.83 +1.0
544,380 - Dshi_0556 0.85 +1.2
544,386 - Dshi_0556 0.86 +0.5
544,386 - Dshi_0556 0.86 +1.4
544,411 + -0.8
544,439 + +0.2
544,440 + +0.7
544,452 - +0.9
544,498 + -0.2
544,506 - -1.4
544,579 + Dshi_0557 0.19 -0.8
544,584 - Dshi_0557 0.20 -2.7
544,604 - Dshi_0557 0.25 -0.7
544,667 + Dshi_0557 0.40 -1.6
544,676 - Dshi_0557 0.42 -0.3
544,702 - Dshi_0557 0.48 +0.2
544,709 - Dshi_0557 0.49 -0.5
544,715 - Dshi_0557 0.51 +1.2
544,719 - Dshi_0557 0.52 -0.2
544,771 + Dshi_0557 0.64 -0.4
544,823 + Dshi_0557 0.76 -0.3
544,825 + Dshi_0557 0.76 -1.8
544,831 - Dshi_0557 0.78 +0.3
544,831 - Dshi_0557 0.78 +0.5
544,855 - Dshi_0557 0.83 -0.2
544,898 - -0.0
544,904 + -1.0
544,977 - +0.1
545,121 + +0.2
545,154 + -0.9
545,161 - -0.6
545,161 - -1.2
545,162 - -0.1
545,186 + Dshi_0558 0.10 +0.1
545,202 + Dshi_0558 0.12 -0.4
545,275 + Dshi_0558 0.18 -0.6
545,298 - Dshi_0558 0.19 -0.5
545,338 + Dshi_0558 0.23 -1.1
545,353 - Dshi_0558 0.24 -0.2
545,353 - Dshi_0558 0.24 -1.3
545,353 - Dshi_0558 0.24 -0.9
545,384 - Dshi_0558 0.26 -2.3
545,389 - Dshi_0558 0.27 -0.3
545,458 - Dshi_0558 0.32 -0.3
545,489 - Dshi_0558 0.35 +0.6
545,489 - Dshi_0558 0.35 -2.0
545,491 + Dshi_0558 0.35 -1.9
545,491 - Dshi_0558 0.35 -0.7
545,500 + Dshi_0558 0.35 -0.8
545,501 + Dshi_0558 0.35 -0.2
545,508 - Dshi_0558 0.36 -0.2
545,508 - Dshi_0558 0.36 -0.6
545,508 - Dshi_0558 0.36 -1.4
545,526 - Dshi_0558 0.37 +0.2
545,549 - Dshi_0558 0.39 +0.4
545,582 - Dshi_0558 0.42 -0.8
545,587 - Dshi_0558 0.42 -1.5
545,627 - Dshi_0558 0.45 +0.5
545,631 + Dshi_0558 0.46 -0.6
545,631 + Dshi_0558 0.46 -0.4
545,677 - Dshi_0558 0.49 -0.8
545,704 + Dshi_0558 0.52 -1.4
545,712 - Dshi_0558 0.52 +0.6
545,714 + Dshi_0558 0.52 -1.1
545,714 + Dshi_0558 0.52 -0.6
545,729 - Dshi_0558 0.54 -0.2
545,760 - Dshi_0558 0.56 -1.1
545,760 - Dshi_0558 0.56 +0.2
545,798 + Dshi_0558 0.59 -0.6
545,799 + Dshi_0558 0.59 -1.2
545,804 + Dshi_0558 0.60 -0.6
545,806 - Dshi_0558 0.60 -0.4
545,810 + Dshi_0558 0.60 +0.0
545,816 - Dshi_0558 0.60 -0.8
545,878 + Dshi_0558 0.65 +0.6
545,954 + Dshi_0558 0.71 +0.7
546,100 + Dshi_0558 0.83 -0.1
546,176 - Dshi_0558 0.89 +0.4
546,213 - -1.8
546,258 - -0.8
546,294 - -2.0
546,340 - +0.1
546,340 - -0.8
546,361 + -2.3
546,361 + -1.8
546,369 - +0.2
546,381 + -0.1
546,381 + -1.8
546,389 - -0.3
546,422 + +0.2
546,458 + -0.3
546,527 + +0.5
546,527 + +0.8
546,556 + -0.1
546,556 + +0.7
546,564 - +0.7
546,564 - -0.3
546,589 - +0.2
546,589 - -0.1
546,605 + -0.2
546,613 - -1.3
546,730 - +0.6
546,753 + +0.2
546,839 + Dshi_0559 0.19 +0.8
546,842 - Dshi_0559 0.20 -0.0
546,847 - Dshi_0559 0.21 +0.8
546,847 - Dshi_0559 0.21 +0.2
546,878 - Dshi_0559 0.29 -0.1
546,924 - Dshi_0559 0.40 -0.1
546,978 + Dshi_0559 0.53 -0.6
546,998 - Dshi_0559 0.58 +0.6
547,017 - Dshi_0559 0.63 +0.6
547,045 - Dshi_0559 0.70 -0.7
547,111 + Dshi_0559 0.86 -0.1
547,114 - Dshi_0559 0.87 -0.8
547,119 - Dshi_0559 0.88 -0.7
547,240 + -0.2
547,253 + Dshi_0560 0.11 +0.2
547,297 + Dshi_0560 0.17 -0.3
547,305 - Dshi_0560 0.18 -0.5

Or see this region's nucleotide sequence