Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0243 and Dshi_0244 are separated by 9 nucleotides Dshi_0244 and Dshi_0245 are separated by 89 nucleotides Dshi_0245 and Dshi_0246 are separated by 91 nucleotides
Dshi_0243: Dshi_0243 - acyltransferase 3 (RefSeq), at 240,789 to 241,940
_0243
Dshi_0244: Dshi_0244 - alanine dehydrogenase (RefSeq), at 241,950 to 243,065
_0244
Dshi_0245: Dshi_0245 - transcriptional regulator, AsnC family (RefSeq), at 243,155 to 243,664
_0245
Dshi_0246: Dshi_0246 - ribosomal protein S21 (RefSeq), at 243,756 to 243,962
_0246
Position (kb) 241
242
243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 240.986 kb on - strand, within Dshi_0243 at 240.991 kb on - strand at 241.053 kb on + strand, within Dshi_0243 at 241.084 kb on - strand, within Dshi_0243 at 241.228 kb on + strand, within Dshi_0243 at 241.288 kb on + strand, within Dshi_0243 at 241.288 kb on + strand, within Dshi_0243 at 241.546 kb on + strand, within Dshi_0243 at 241.636 kb on + strand, within Dshi_0243 at 241.703 kb on + strand, within Dshi_0243 at 241.800 kb on + strand, within Dshi_0243 at 241.809 kb on + strand, within Dshi_0243 at 241.846 kb on - strand at 242.082 kb on + strand, within Dshi_0244 at 242.085 kb on - strand, within Dshi_0244 at 242.104 kb on + strand, within Dshi_0244 at 242.205 kb on - strand, within Dshi_0244 at 242.245 kb on + strand, within Dshi_0244 at 242.319 kb on - strand, within Dshi_0244 at 242.480 kb on - strand, within Dshi_0244 at 242.480 kb on - strand, within Dshi_0244 at 242.552 kb on - strand, within Dshi_0244 at 242.564 kb on + strand, within Dshi_0244 at 242.596 kb on - strand, within Dshi_0244 at 242.734 kb on + strand, within Dshi_0244 at 242.857 kb on + strand, within Dshi_0244 at 242.879 kb on + strand, within Dshi_0244 at 242.911 kb on - strand, within Dshi_0244 at 242.924 kb on - strand, within Dshi_0244 at 242.964 kb on - strand at 243.034 kb on + strand at 243.042 kb on - strand at 243.130 kb on - strand at 243.146 kb on + strand at 243.244 kb on + strand, within Dshi_0245 at 243.265 kb on + strand, within Dshi_0245 at 243.280 kb on + strand, within Dshi_0245 at 243.301 kb on + strand, within Dshi_0245 at 243.310 kb on - strand, within Dshi_0245 at 243.423 kb on + strand, within Dshi_0245 at 243.485 kb on - strand, within Dshi_0245 at 243.610 kb on - strand, within Dshi_0245 at 243.645 kb on - strand at 243.754 kb on + strand at 244.046 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 240,986 - Dshi_0243 0.17 +0.7 240,991 - +1.0 241,053 + Dshi_0243 0.23 -1.3 241,084 - Dshi_0243 0.26 +1.3 241,228 + Dshi_0243 0.38 -0.3 241,288 + Dshi_0243 0.43 +0.0 241,288 + Dshi_0243 0.43 -0.2 241,546 + Dshi_0243 0.66 -1.2 241,636 + Dshi_0243 0.74 -0.9 241,703 + Dshi_0243 0.79 -0.4 241,800 + Dshi_0243 0.88 -2.5 241,809 + Dshi_0243 0.89 +1.0 241,846 - +1.6 242,082 + Dshi_0244 0.12 +1.5 242,085 - Dshi_0244 0.12 +2.0 242,104 + Dshi_0244 0.14 +1.7 242,205 - Dshi_0244 0.23 +1.9 242,245 + Dshi_0244 0.26 +2.3 242,319 - Dshi_0244 0.33 +1.9 242,480 - Dshi_0244 0.47 +3.4 242,480 - Dshi_0244 0.47 +2.5 242,552 - Dshi_0244 0.54 +2.1 242,564 + Dshi_0244 0.55 +2.1 242,596 - Dshi_0244 0.58 +2.4 242,734 + Dshi_0244 0.70 +2.2 242,857 + Dshi_0244 0.81 +2.0 242,879 + Dshi_0244 0.83 +1.9 242,911 - Dshi_0244 0.86 +2.5 242,924 - Dshi_0244 0.87 +2.1 242,964 - +2.0 243,034 + +2.0 243,042 - +2.1 243,130 - +1.5 243,146 + +2.0 243,244 + Dshi_0245 0.17 +2.5 243,265 + Dshi_0245 0.22 +1.5 243,280 + Dshi_0245 0.25 +2.5 243,301 + Dshi_0245 0.29 +2.1 243,310 - Dshi_0245 0.30 +2.2 243,423 + Dshi_0245 0.53 +2.6 243,485 - Dshi_0245 0.65 +2.1 243,610 - Dshi_0245 0.89 +3.5 243,645 - +2.8 243,754 + -2.8 244,046 - -0.7
Or see this region's nucleotide sequence