Experiment: MoYLS4 no iron
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt torS and DVU2282 are separated by 269 nucleotides DVU2282 and DVU2283 are separated by 176 nucleotides DVU2283 and DVU2284 are separated by 58 nucleotides
DVU2281: torS - sensor histidine kinase/response regulator (TIGR), at 2,369,933 to 2,372,134
torS
DVU2282: DVU2282 - hypothetical protein (TIGR), at 2,372,404 to 2,373,954
DVU2282
DVU2283: DVU2283 - hypothetical protein (TIGR), at 2,374,131 to 2,374,232
DVU2283
DVU2284: DVU2284 - hypothetical protein (TIGR), at 2,374,291 to 2,374,803
DVU2284
Position (kb)
2372
2373
2374 Strain fitness (log2 ratio)
-1
0
1
2 at 2371.427 kb on - strand, within torS at 2371.543 kb on - strand, within torS at 2371.549 kb on - strand, within torS at 2371.554 kb on + strand, within torS at 2371.618 kb on + strand, within torS at 2371.672 kb on + strand, within torS at 2371.677 kb on + strand, within torS at 2371.725 kb on - strand, within torS at 2371.749 kb on - strand, within torS at 2371.833 kb on - strand, within torS at 2371.839 kb on + strand, within torS at 2371.900 kb on + strand, within torS at 2371.900 kb on + strand, within torS at 2371.906 kb on + strand, within torS at 2371.906 kb on + strand, within torS at 2372.071 kb on + strand at 2372.137 kb on - strand at 2372.151 kb on + strand at 2372.173 kb on + strand at 2372.551 kb on + strand at 2372.572 kb on + strand, within DVU2282 at 2372.623 kb on - strand, within DVU2282 at 2372.625 kb on + strand, within DVU2282 at 2372.658 kb on + strand, within DVU2282 at 2372.666 kb on - strand, within DVU2282 at 2372.693 kb on + strand, within DVU2282 at 2372.708 kb on + strand, within DVU2282 at 2372.708 kb on + strand, within DVU2282 at 2372.716 kb on - strand, within DVU2282 at 2372.716 kb on - strand, within DVU2282 at 2372.760 kb on - strand, within DVU2282 at 2372.780 kb on - strand, within DVU2282 at 2372.886 kb on - strand, within DVU2282 at 2372.995 kb on - strand, within DVU2282 at 2373.081 kb on - strand, within DVU2282 at 2373.094 kb on + strand, within DVU2282 at 2373.204 kb on + strand, within DVU2282 at 2373.204 kb on + strand, within DVU2282 at 2373.212 kb on - strand, within DVU2282 at 2373.218 kb on - strand, within DVU2282 at 2373.268 kb on + strand, within DVU2282 at 2373.276 kb on - strand, within DVU2282 at 2373.278 kb on - strand, within DVU2282 at 2373.372 kb on + strand, within DVU2282 at 2373.393 kb on + strand, within DVU2282 at 2373.419 kb on + strand, within DVU2282 at 2373.478 kb on - strand, within DVU2282 at 2373.554 kb on - strand, within DVU2282 at 2373.583 kb on - strand, within DVU2282 at 2373.631 kb on + strand, within DVU2282 at 2373.649 kb on + strand, within DVU2282 at 2373.657 kb on - strand, within DVU2282 at 2373.695 kb on + strand, within DVU2282 at 2373.720 kb on - strand, within DVU2282 at 2373.739 kb on + strand, within DVU2282 at 2373.742 kb on - strand, within DVU2282 at 2373.830 kb on + strand at 2373.933 kb on + strand at 2374.019 kb on + strand at 2374.111 kb on + strand at 2374.112 kb on - strand at 2374.136 kb on - strand at 2374.142 kb on + strand, within DVU2283 at 2374.142 kb on + strand, within DVU2283 at 2374.212 kb on - strand, within DVU2283 at 2374.418 kb on - strand, within DVU2284 at 2374.451 kb on + strand, within DVU2284 at 2374.515 kb on + strand, within DVU2284 at 2374.515 kb on + strand, within DVU2284 at 2374.515 kb on + strand, within DVU2284 at 2374.667 kb on + strand, within DVU2284 at 2374.667 kb on + strand, within DVU2284 at 2374.667 kb on + strand, within DVU2284 at 2374.694 kb on - strand, within DVU2284 at 2374.694 kb on - strand, within DVU2284 at 2374.705 kb on + strand, within DVU2284 at 2374.737 kb on - strand, within DVU2284 at 2374.834 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 no iron remove 2,371,427 - torS DVU2281 0.68 -0.2 2,371,543 - torS DVU2281 0.73 +0.3 2,371,549 - torS DVU2281 0.73 -0.0 2,371,554 + torS DVU2281 0.74 -0.1 2,371,618 + torS DVU2281 0.77 +0.9 2,371,672 + torS DVU2281 0.79 -0.8 2,371,677 + torS DVU2281 0.79 -0.4 2,371,725 - torS DVU2281 0.81 -0.1 2,371,749 - torS DVU2281 0.82 +0.1 2,371,833 - torS DVU2281 0.86 -0.1 2,371,839 + torS DVU2281 0.87 -0.3 2,371,900 + torS DVU2281 0.89 -0.8 2,371,900 + torS DVU2281 0.89 +0.2 2,371,906 + torS DVU2281 0.90 +1.2 2,371,906 + torS DVU2281 0.90 +0.6 2,372,071 + -0.6 2,372,137 - -0.4 2,372,151 + -0.8 2,372,173 + -0.5 2,372,551 + +0.1 2,372,572 + DVU2282 0.11 +2.4 2,372,623 - DVU2282 0.14 -0.4 2,372,625 + DVU2282 0.14 -0.0 2,372,658 + DVU2282 0.16 -0.2 2,372,666 - DVU2282 0.17 -0.8 2,372,693 + DVU2282 0.19 -0.6 2,372,708 + DVU2282 0.20 -0.1 2,372,708 + DVU2282 0.20 +1.5 2,372,716 - DVU2282 0.20 -0.4 2,372,716 - DVU2282 0.20 -0.2 2,372,760 - DVU2282 0.23 +0.8 2,372,780 - DVU2282 0.24 +1.2 2,372,886 - DVU2282 0.31 -0.3 2,372,995 - DVU2282 0.38 +1.2 2,373,081 - DVU2282 0.44 -0.1 2,373,094 + DVU2282 0.44 +0.3 2,373,204 + DVU2282 0.52 -1.0 2,373,204 + DVU2282 0.52 +1.2 2,373,212 - DVU2282 0.52 -0.4 2,373,218 - DVU2282 0.52 -0.8 2,373,268 + DVU2282 0.56 +0.6 2,373,276 - DVU2282 0.56 -0.1 2,373,278 - DVU2282 0.56 -1.3 2,373,372 + DVU2282 0.62 -0.2 2,373,393 + DVU2282 0.64 -0.9 2,373,419 + DVU2282 0.65 -0.3 2,373,478 - DVU2282 0.69 -0.4 2,373,554 - DVU2282 0.74 -0.1 2,373,583 - DVU2282 0.76 -0.7 2,373,631 + DVU2282 0.79 +0.0 2,373,649 + DVU2282 0.80 +1.0 2,373,657 - DVU2282 0.81 +0.7 2,373,695 + DVU2282 0.83 +0.0 2,373,720 - DVU2282 0.85 -0.6 2,373,739 + DVU2282 0.86 +0.2 2,373,742 - DVU2282 0.86 -0.2 2,373,830 + -0.4 2,373,933 + +1.2 2,374,019 + -0.2 2,374,111 + -0.2 2,374,112 - -0.5 2,374,136 - +0.8 2,374,142 + DVU2283 0.11 +0.2 2,374,142 + DVU2283 0.11 -0.0 2,374,212 - DVU2283 0.79 +0.0 2,374,418 - DVU2284 0.25 -0.3 2,374,451 + DVU2284 0.31 -0.4 2,374,515 + DVU2284 0.44 +0.0 2,374,515 + DVU2284 0.44 -0.8 2,374,515 + DVU2284 0.44 +0.7 2,374,667 + DVU2284 0.73 +0.2 2,374,667 + DVU2284 0.73 +0.1 2,374,667 + DVU2284 0.73 +0.9 2,374,694 - DVU2284 0.79 +0.8 2,374,694 - DVU2284 0.79 -0.7 2,374,705 + DVU2284 0.81 -0.4 2,374,737 - DVU2284 0.87 +0.0 2,374,834 + +0.2
Or see this region's nucleotide sequence