Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05995

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
1,145,539	+		MMP_RS05980	0.42	+0.1
1,145,567	-		MMP_RS05980	0.48	+0.0
1,145,568	+		MMP_RS05980	0.48	-0.0
1,145,568	+		MMP_RS05980	0.48	-0.7
1,145,635	+		MMP_RS05980	0.61	+1.3
1,145,648	-		MMP_RS05980	0.64	-0.1
1,145,676	+		MMP_RS05980	0.69	-0.0
1,145,688	+		MMP_RS05980	0.71	+0.6
1,145,745	+		MMP_RS05980	0.82	-0.9
1,145,765	+		MMP_RS05980	0.86	-0.1
1,145,765	+		MMP_RS05980	0.86	+0.2
1,145,765	+		MMP_RS05980	0.86	+0.8
1,145,843	+				+0.0
1,145,859	+				+0.1
1,145,961	+		MMP_RS05985	0.57	-0.1
1,145,961	+		MMP_RS05985	0.57	+0.1
1,145,961	+		MMP_RS05985	0.57	+0.7
1,146,039	+				-0.1
1,146,041	+				-0.1
1,146,052	-				-0.3
1,146,053	+				+0.1
1,146,073	-				+0.1
1,146,105	-				-0.4
1,146,292	-		MMP_RS05990	0.61	+0.1
1,146,312	+		MMP_RS05990	0.67	-0.0
1,146,335	-		MMP_RS05990	0.73	+0.5
1,146,350	+		MMP_RS05990	0.77	-0.1
1,146,377	-		MMP_RS05990	0.85	+0.3
1,146,432	-				-0.2
1,146,435	-				-0.0
1,146,435	-				-0.0
1,146,461	-				-0.2
1,146,462	+				+0.1
1,146,573	+				+1.3
1,146,578	+				+0.8
1,146,603	-		MMP_RS05995	0.12	+0.1
1,146,760	+		MMP_RS05995	0.25	+0.0
1,146,797	-		MMP_RS05995	0.28	+0.4
1,146,798	+		MMP_RS05995	0.28	-0.1
1,146,820	-		MMP_RS05995	0.30	-0.6
1,146,823	+		MMP_RS05995	0.31	+0.4
1,146,932	+		MMP_RS05995	0.40	-0.4
1,146,932	+		MMP_RS05995	0.40	+0.5
1,146,937	+		MMP_RS05995	0.40	+0.3
1,147,107	-		MMP_RS05995	0.55	+0.2
1,147,110	-		MMP_RS05995	0.55	+0.5
1,147,110	-		MMP_RS05995	0.55	+0.0
1,147,110	-		MMP_RS05995	0.55	+0.3
1,147,111	+		MMP_RS05995	0.55	-0.1
1,147,111	+		MMP_RS05995	0.55	-0.1
1,147,226	-		MMP_RS05995	0.65	+0.1
1,147,321	+		MMP_RS05995	0.73	+0.3
1,147,392	-		MMP_RS05995	0.79	-0.2
1,147,421	-		MMP_RS05995	0.82	+0.1
1,147,492	-		MMP_RS05995	0.88	-0.1
1,147,504	-		MMP_RS05995	0.89	+0.4
1,147,510	-		MMP_RS05995	0.90	+0.2
1,147,511	+		MMP_RS05995	0.90	+0.3
1,147,555	+				+0.4
1,147,621	-				+0.5
1,147,621	-				+0.3
1,147,622	+				-0.4
1,147,676	-				-0.1
1,147,712	+		MMP_RS06000	0.18	+0.4
1,147,716	-		MMP_RS06000	0.19	+0.3
1,147,717	+		MMP_RS06000	0.20	+0.3
1,147,717	+		MMP_RS06000	0.20	+0.9
1,147,778	-		MMP_RS06000	0.39	+0.1
1,147,778	-		MMP_RS06000	0.39	+0.2
1,147,779	+		MMP_RS06000	0.39	-0.6
1,147,808	+		MMP_RS06000	0.49	-0.4
1,147,968	+				+0.2
1,147,989	-				+0.5
1,148,019	-				+0.4
1,148,020	+				+0.2
1,148,029	+				-0.0
1,148,029	+				+0.1
1,148,066	-				-0.2
1,148,066	-				+0.3
1,148,066	-				-0.2
1,148,228	+		MMP_RS06005	0.60	+0.2
1,148,287	-		MMP_RS06005	0.87	-0.1
1,148,288	+		MMP_RS06005	0.87	+0.4
1,148,288	+		MMP_RS06005	0.87	+0.1