Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01150

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01145 and MMP_RS01150 are separated by 155 nucleotidesMMP_RS01150 and MMP_RS01155 are separated by 15 nucleotidesMMP_RS01155 and MMP_RS01160 are separated by 137 nucleotides MMP_RS01145: MMP_RS01145 - ABC transporter ATP-binding protein, at 214,016 to 215,158 _RS01145 MMP_RS01150: MMP_RS01150 - aldo/keto reductase, at 215,314 to 216,543 _RS01150 MMP_RS01155: MMP_RS01155 - XRE family transcriptional regulator, at 216,559 to 217,113 _RS01155 MMP_RS01160: MMP_RS01160 - DMT family transporter, at 217,251 to 218,150 _RS01160 Position (kb) 215 216 217Strain fitness (log2 ratio) -1 0 1at 214.408 kb on + strand, within MMP_RS01145at 214.474 kb on + strand, within MMP_RS01145at 214.782 kb on - strand, within MMP_RS01145at 214.782 kb on - strand, within MMP_RS01145at 214.903 kb on + strand, within MMP_RS01145at 214.911 kb on - strand, within MMP_RS01145at 214.911 kb on - strand, within MMP_RS01145at 214.916 kb on + strand, within MMP_RS01145at 214.917 kb on - strand, within MMP_RS01145at 214.965 kb on - strand, within MMP_RS01145at 214.965 kb on - strand, within MMP_RS01145at 214.966 kb on + strand, within MMP_RS01145at 215.062 kb on + strandat 215.217 kb on - strandat 215.218 kb on + strandat 215.218 kb on + strandat 215.218 kb on + strandat 215.219 kb on - strandat 215.219 kb on - strandat 215.219 kb on - strandat 215.219 kb on - strandat 215.219 kb on - strandat 215.219 kb on - strandat 215.219 kb on - strandat 215.220 kb on + strandat 215.220 kb on + strandat 215.220 kb on + strandat 215.222 kb on + strandat 215.237 kb on - strandat 215.309 kb on - strandat 215.313 kb on - strandat 215.313 kb on - strandat 215.314 kb on + strandat 215.467 kb on + strand, within MMP_RS01150at 215.603 kb on + strand, within MMP_RS01150at 215.650 kb on - strand, within MMP_RS01150at 215.835 kb on - strand, within MMP_RS01150at 216.216 kb on - strand, within MMP_RS01150at 216.331 kb on + strand, within MMP_RS01150at 216.486 kb on + strandat 216.510 kb on - strandat 216.572 kb on - strandat 216.572 kb on - strandat 216.572 kb on - strandat 216.575 kb on + strandat 216.640 kb on + strand, within MMP_RS01155at 216.739 kb on + strand, within MMP_RS01155at 216.790 kb on - strand, within MMP_RS01155at 216.824 kb on + strand, within MMP_RS01155at 216.857 kb on - strand, within MMP_RS01155at 216.924 kb on - strand, within MMP_RS01155at 216.955 kb on - strand, within MMP_RS01155at 217.120 kb on - strandat 217.136 kb on - strandat 217.140 kb on + strandat 217.163 kb on + strandat 217.171 kb on - strandat 217.180 kb on - strandat 217.180 kb on - strandat 217.181 kb on + strandat 217.230 kb on + strandat 217.232 kb on - strandat 217.233 kb on + strandat 217.238 kb on + strandat 217.379 kb on + strand, within MMP_RS01160at 217.391 kb on + strand, within MMP_RS01160at 217.408 kb on - strand, within MMP_RS01160at 217.464 kb on - strand, within MMP_RS01160at 217.464 kb on - strand, within MMP_RS01160at 217.504 kb on + strand, within MMP_RS01160

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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214,408 + MMP_RS01145 0.34 +0.4
214,474 + MMP_RS01145 0.40 -0.2
214,782 - MMP_RS01145 0.67 +0.1
214,782 - MMP_RS01145 0.67 -0.1
214,903 + MMP_RS01145 0.78 +0.3
214,911 - MMP_RS01145 0.78 +0.0
214,911 - MMP_RS01145 0.78 +0.4
214,916 + MMP_RS01145 0.79 -0.0
214,917 - MMP_RS01145 0.79 +0.1
214,965 - MMP_RS01145 0.83 -0.1
214,965 - MMP_RS01145 0.83 +0.5
214,966 + MMP_RS01145 0.83 +0.3
215,062 + +0.3
215,217 - -0.1
215,218 + +0.3
215,218 + -0.1
215,218 + +0.6
215,219 - -0.2
215,219 - +0.3
215,219 - +0.0
215,219 - +0.2
215,219 - +0.4
215,219 - +0.2
215,219 - -0.1
215,220 + +0.2
215,220 + +0.1
215,220 + +0.5
215,222 + +0.3
215,237 - -0.2
215,309 - +0.3
215,313 - -0.0
215,313 - -0.1
215,314 + +0.2
215,467 + MMP_RS01150 0.12 +0.8
215,603 + MMP_RS01150 0.23 +0.1
215,650 - MMP_RS01150 0.27 -1.6
215,835 - MMP_RS01150 0.42 -0.3
216,216 - MMP_RS01150 0.73 -0.1
216,331 + MMP_RS01150 0.83 +0.1
216,486 + +0.2
216,510 - -0.4
216,572 - +0.3
216,572 - -0.0
216,572 - +0.2
216,575 + -0.3
216,640 + MMP_RS01155 0.15 +0.3
216,739 + MMP_RS01155 0.32 +0.0
216,790 - MMP_RS01155 0.42 -0.1
216,824 + MMP_RS01155 0.48 +0.1
216,857 - MMP_RS01155 0.54 +0.1
216,924 - MMP_RS01155 0.66 +0.2
216,955 - MMP_RS01155 0.71 +0.1
217,120 - +0.4
217,136 - -0.2
217,140 + -0.0
217,163 + -0.3
217,171 - +0.2
217,180 - +0.2
217,180 - -0.2
217,181 + +0.2
217,230 + -0.2
217,232 - -0.1
217,233 + -0.1
217,238 + +0.2
217,379 + MMP_RS01160 0.14 +0.2
217,391 + MMP_RS01160 0.16 -0.4
217,408 - MMP_RS01160 0.17 -0.2
217,464 - MMP_RS01160 0.24 +0.5
217,464 - MMP_RS01160 0.24 +0.2
217,504 + MMP_RS01160 0.28 +0.5

Or see this region's nucleotide sequence