Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16475

Experiment: Gly-Glu 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gly-Glu 20 mM
3,615,075	+		LRK54_RS16460	0.42	+0.3
3,615,075	+		LRK54_RS16460	0.42	-1.5
3,615,075	+		LRK54_RS16460	0.42	-1.2
3,615,075	+		LRK54_RS16460	0.42	-1.9
3,615,075	+		LRK54_RS16460	0.42	+0.0
3,615,075	+		LRK54_RS16460	0.42	+1.9
3,615,075	+		LRK54_RS16460	0.42	-0.4
3,615,075	+		LRK54_RS16460	0.42	-1.6
3,615,075	+		LRK54_RS16460	0.42	-0.9
3,615,075	+		LRK54_RS16460	0.42	+0.7
3,615,075	+		LRK54_RS16460	0.42	+0.0
3,615,075	+		LRK54_RS16460	0.42	-0.5
3,615,076	-		LRK54_RS16460	0.43	-0.4
3,615,076	-		LRK54_RS16460	0.43	+0.2
3,615,076	-		LRK54_RS16460	0.43	+1.4
3,615,076	-		LRK54_RS16460	0.43	-0.3
3,615,076	-		LRK54_RS16460	0.43	+0.4
3,615,076	-		LRK54_RS16460	0.43	-2.1
3,615,076	-		LRK54_RS16460	0.43	+0.6
3,615,076	-		LRK54_RS16460	0.43	+0.2
3,615,076	-		LRK54_RS16460	0.43	+0.8
3,615,076	-		LRK54_RS16460	0.43	+0.1
3,615,076	-		LRK54_RS16460	0.43	-0.4
3,615,076	-		LRK54_RS16460	0.43	+0.4
3,615,076	-		LRK54_RS16460	0.43	-0.1
3,615,076	-		LRK54_RS16460	0.43	-0.5
3,615,252	+				+0.0
3,615,252	+				-2.5
3,615,252	+				+1.5
3,615,252	+				+0.4
3,615,252	+				+0.8
3,615,252	+				-1.3
3,615,252	+				+1.9
3,615,252	+				-1.4
3,615,252	+				-0.6
3,615,252	+				+0.4
3,615,252	+				+1.1
3,615,252	+				-0.2
3,615,252	+				+0.7
3,615,252	+				-0.6
3,615,252	+				-0.0
3,615,252	+				+1.2
3,615,252	+				-0.3
3,615,252	+				-0.0
3,615,252	+				-0.6
3,615,252	+				-0.4
3,615,252	+				-0.4
3,615,253	-				-0.1
3,615,253	-				+0.9
3,615,253	-				-1.4
3,615,253	-				+0.2
3,615,253	-				+0.4
3,615,253	-				+0.4
3,615,253	-				-2.1
3,615,253	-				-0.4
3,615,253	-				-1.5
3,615,253	-				-0.1
3,615,253	-				-0.1
3,615,253	-				+0.9
3,615,253	-				+0.1
3,615,253	-				-2.3
3,615,253	-				+0.3
3,615,253	-				-0.5
3,615,253	-				+0.4
3,615,253	-				-0.2
3,615,253	-				+0.9
3,615,253	-				+1.6
3,615,253	-				-0.3
3,615,253	-				+0.9
3,615,253	-				-0.1
3,615,253	-				+0.0
3,615,414	+		LRK54_RS16465	0.33	+1.9
3,615,414	+		LRK54_RS16465	0.33	-1.2
3,615,414	+		LRK54_RS16465	0.33	-0.1
3,615,414	+		LRK54_RS16465	0.33	-1.4
3,615,414	+		LRK54_RS16465	0.33	+0.2
3,615,414	+		LRK54_RS16465	0.33	-0.6
3,615,414	+		LRK54_RS16465	0.33	-0.2
3,615,414	+		LRK54_RS16465	0.33	-0.1
3,615,414	+		LRK54_RS16465	0.33	-1.0
3,615,414	+		LRK54_RS16465	0.33	+0.1
3,615,414	+		LRK54_RS16465	0.33	-0.1
3,615,414	+		LRK54_RS16465	0.33	+0.3
3,615,414	+		LRK54_RS16465	0.33	-1.4
3,615,414	+		LRK54_RS16465	0.33	-0.6
3,615,414	+		LRK54_RS16465	0.33	+0.4
3,615,414	+		LRK54_RS16465	0.33	-2.5
3,615,414	+		LRK54_RS16465	0.33	-2.2
3,615,415	-		LRK54_RS16465	0.33	-0.9
3,615,415	-		LRK54_RS16465	0.33	-1.9
3,615,415	-		LRK54_RS16465	0.33	+0.4
3,615,415	-		LRK54_RS16465	0.33	-1.4
3,615,415	-		LRK54_RS16465	0.33	+0.3
3,615,415	-		LRK54_RS16465	0.33	+0.1
3,615,415	-		LRK54_RS16465	0.33	+0.6
3,615,415	-		LRK54_RS16465	0.33	-1.1
3,615,415	-		LRK54_RS16465	0.33	-1.1
3,615,415	-		LRK54_RS16465	0.33	+0.6
3,615,415	-		LRK54_RS16465	0.33	+0.4
3,615,415	-		LRK54_RS16465	0.33	-0.6
3,615,415	-		LRK54_RS16465	0.33	-0.1
3,615,415	-		LRK54_RS16465	0.33	-0.0
3,615,415	-		LRK54_RS16465	0.33	-1.1
3,615,426	+		LRK54_RS16465	0.36	+0.6
3,615,426	+		LRK54_RS16465	0.36	-1.1
3,615,426	+		LRK54_RS16465	0.36	-0.1
3,615,427	-		LRK54_RS16465	0.36	+1.1
3,615,427	-		LRK54_RS16465	0.36	-0.1
3,615,466	+		LRK54_RS16465	0.44	+0.2
3,615,466	+		LRK54_RS16465	0.44	+1.4
3,615,466	+		LRK54_RS16465	0.44	-0.3
3,615,466	+		LRK54_RS16465	0.44	-0.1
3,615,467	-		LRK54_RS16465	0.44	-0.9
3,615,467	-		LRK54_RS16465	0.44	+0.4
3,615,498	+		LRK54_RS16465	0.51	-0.0
3,615,499	-		LRK54_RS16465	0.51	+1.1
3,615,499	-		LRK54_RS16465	0.51	-0.6
3,615,499	-		LRK54_RS16465	0.51	+0.6
3,615,499	-		LRK54_RS16465	0.51	+0.4
3,615,499	-		LRK54_RS16465	0.51	+0.3
3,615,499	-		LRK54_RS16465	0.51	+0.9
3,615,510	+		LRK54_RS16465	0.54	+0.6
3,615,510	+		LRK54_RS16465	0.54	+0.8
3,615,511	-		LRK54_RS16465	0.54	-0.6
3,615,511	-		LRK54_RS16465	0.54	-0.5
3,615,511	-		LRK54_RS16465	0.54	+0.8
3,615,595	-		LRK54_RS16465	0.72	-0.9
3,615,803	+		LRK54_RS16470	0.19	+0.4
3,615,803	+		LRK54_RS16470	0.19	-2.5
3,615,803	+		LRK54_RS16470	0.19	-0.2
3,615,804	-		LRK54_RS16470	0.20	-0.4
3,615,804	-		LRK54_RS16470	0.20	-1.5
3,615,804	-		LRK54_RS16470	0.20	-0.9
3,615,804	-		LRK54_RS16470	0.20	+1.9
3,615,804	-		LRK54_RS16470	0.20	-2.0
3,615,804	-		LRK54_RS16470	0.20	-1.8
3,615,842	+		LRK54_RS16470	0.30	+0.9
3,615,842	+		LRK54_RS16470	0.30	-0.4
3,615,842	+		LRK54_RS16470	0.30	+0.1
3,615,842	+		LRK54_RS16470	0.30	-1.7
3,615,842	+		LRK54_RS16470	0.30	-0.6
3,615,842	+		LRK54_RS16470	0.30	+0.9
3,615,843	-		LRK54_RS16470	0.31	-1.3
3,615,843	-		LRK54_RS16470	0.31	+0.5
3,615,861	+		LRK54_RS16470	0.36	+0.8
3,615,861	+		LRK54_RS16470	0.36	-1.4
3,616,284	+		LRK54_RS16475	0.45	-0.6
3,616,284	+		LRK54_RS16475	0.45	-2.0
3,616,284	+		LRK54_RS16475	0.45	+0.5
3,616,284	+		LRK54_RS16475	0.45	+0.8
3,616,284	+		LRK54_RS16475	0.45	-2.3
3,616,284	+		LRK54_RS16475	0.45	+0.2
3,616,284	+		LRK54_RS16475	0.45	-1.5
3,616,284	+		LRK54_RS16475	0.45	-1.1
3,616,285	-		LRK54_RS16475	0.45	-0.1
3,616,308	+		LRK54_RS16475	0.50	-0.2
3,616,309	-		LRK54_RS16475	0.50	+0.4
3,616,309	-		LRK54_RS16475	0.50	-1.2
3,616,309	-		LRK54_RS16475	0.50	+0.6
3,616,309	-		LRK54_RS16475	0.50	+1.3
3,616,383	+		LRK54_RS16475	0.65	-0.1
3,616,383	+		LRK54_RS16475	0.65	-0.3
3,616,383	+		LRK54_RS16475	0.65	-0.5
3,616,384	-		LRK54_RS16475	0.66	-1.1
3,616,473	+		LRK54_RS16475	0.84	+0.2
3,616,566	+				-0.4
3,616,566	+				-1.8
3,616,566	+				-0.9
3,616,566	+				-0.1
3,616,566	+				-0.1
3,616,566	+				-1.3
3,616,566	+				-1.1
3,616,567	-				-0.5
3,616,567	-				-0.4
3,616,567	-				-0.3
3,616,567	-				-0.7
3,616,567	-				-0.1
3,616,567	-				+1.5
3,616,567	-				+0.1
3,616,567	-				-0.7
3,616,567	-				-0.6
3,616,567	-				+0.1
3,616,567	-				+0.2
3,616,567	-				+0.6
3,616,567	-				+0.5
3,616,567	-				-0.9
3,616,567	-				+0.9
3,616,567	-				+0.9
3,616,603	-				-0.9
3,616,671	+				+0.7
3,616,775	-		LRK54_RS16480	0.13	-1.4
3,616,845	+		LRK54_RS16480	0.21	+0.6
3,616,845	+		LRK54_RS16480	0.21	+0.2
3,616,846	-		LRK54_RS16480	0.21	-1.1
3,616,846	-		LRK54_RS16480	0.21	-0.3
3,616,846	-		LRK54_RS16480	0.21	-0.6
3,616,846	-		LRK54_RS16480	0.21	+0.8
3,616,846	-		LRK54_RS16480	0.21	+0.7
3,616,846	-		LRK54_RS16480	0.21	-0.6
3,616,846	-		LRK54_RS16480	0.21	-1.0
3,616,846	-		LRK54_RS16480	0.21	-0.2
3,616,846	-		LRK54_RS16480	0.21	-0.2
3,616,846	-		LRK54_RS16480	0.21	-0.8
3,616,846	-		LRK54_RS16480	0.21	-0.3
3,617,367	+		LRK54_RS16480	0.84	-1.6
3,617,367	+		LRK54_RS16480	0.84	-1.9
3,617,367	+		LRK54_RS16480	0.84	+0.4
3,617,367	+		LRK54_RS16480	0.84	+1.9
3,617,367	+		LRK54_RS16480	0.84	-0.6
3,617,367	+		LRK54_RS16480	0.84	-0.2
3,617,367	+		LRK54_RS16480	0.84	+1.2
3,617,368	-		LRK54_RS16480	0.84	+0.4
3,617,368	-		LRK54_RS16480	0.84	-0.2
3,617,368	-		LRK54_RS16480	0.84	-0.5
3,617,368	-		LRK54_RS16480	0.84	-0.9
3,617,368	-		LRK54_RS16480	0.84	+0.7
3,617,368	-		LRK54_RS16480	0.84	-0.4
3,617,368	-		LRK54_RS16480	0.84	+0.1
3,617,412	+		LRK54_RS16480	0.89	+0.3
3,617,413	-		LRK54_RS16480	0.89	-0.7
3,617,512	+				+0.4
3,617,512	+				-0.4
3,617,512	+				+0.4
3,617,513	-				-0.6