Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07950

Experiment: Gly-Glu 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gly-Glu 20 mM
1,739,254	+				+0.3
1,739,254	+				-1.1
1,739,254	+				+1.8
1,739,255	-				-0.7
1,739,255	-				+0.0
1,739,255	-				-0.4
1,739,255	-				+0.2
1,739,255	-				-0.2
1,739,255	-				+0.1
1,739,276	+				-0.3
1,739,276	+				-0.1
1,739,276	+				-0.4
1,739,276	+				+0.0
1,739,277	-				-1.1
1,739,277	-				-0.4
1,739,303	+				-0.4
1,739,303	+				-0.2
1,739,303	+				-1.5
1,739,303	+				+0.3
1,739,304	-				+0.2
1,739,304	-				+1.5
1,739,304	-				-1.0
1,739,415	+				+0.5
1,739,415	+				-0.1
1,739,415	+				-2.2
1,739,415	+				-0.5
1,739,415	+				-0.8
1,739,415	+				-0.2
1,739,416	-				-1.2
1,739,416	-				-0.6
1,739,416	-				-1.8
1,739,416	-				-0.2
1,739,416	-				-0.1
1,739,416	-				+0.9
1,739,416	-				+0.3
1,739,417	+				-0.1
1,739,417	+				+1.2
1,739,417	+				-2.0
1,739,417	+				+0.2
1,739,417	+				-1.7
1,739,418	-				-0.1
1,739,436	+				-0.4
1,739,437	-				+0.5
1,739,437	-				+0.9
1,739,439	+				-0.9
1,739,439	+				-0.8
1,739,439	+				-0.9
1,739,440	-				-1.0
1,739,440	-				-0.4
1,739,440	-				-2.1
1,739,440	-				-2.5
1,739,440	-				-0.1
1,739,440	-				-0.7
1,739,440	-				-1.6
1,739,469	+				-1.4
1,739,488	-				-0.8
1,739,544	-				-2.1
1,739,544	-				-0.2
1,739,617	+				-0.5
1,739,618	-				-0.2
1,739,618	-				+0.1
1,739,629	+				+1.6
1,739,629	+				-0.0
1,739,629	+				-0.1
1,739,631	+				-1.3
1,739,631	+				+0.5
1,739,631	+				-1.0
1,739,632	-				+0.3
1,739,632	-				-0.0
1,739,632	-				-0.4
1,739,632	-				+1.3
1,739,632	-				+0.9
1,739,632	-				+1.9
1,739,656	+				-0.5
1,739,656	+				-0.7
1,739,656	+				-2.1
1,739,656	+				+0.2
1,739,657	-				-0.8
1,739,657	-				-0.1
1,739,657	-				-0.4
1,739,657	-				-1.1
1,739,657	-				-0.4
1,739,660	+				-0.4
1,739,660	+				-0.7
1,739,660	+				-1.4
1,739,660	+				+0.0
1,739,661	-				-0.2
1,739,661	-				-1.5
1,739,661	-				-0.2
1,739,661	-				+0.3
1,739,661	-				-1.3
1,739,661	-				-3.0
1,739,661	-				-1.1
1,739,661	-				+0.1
1,739,661	-				-1.4
1,739,663	+				-0.8
1,739,663	+				-1.1
1,739,663	+				-0.4
1,739,663	+				-1.0
1,739,663	+				+0.4
1,739,663	+				+0.3
1,739,663	+				+0.1
1,739,663	+				-3.1
1,739,664	-				-1.3
1,739,664	-				-3.0
1,739,664	-				-0.9
1,739,715	+				-2.2
1,739,715	+				-1.0
1,739,774	+				+0.2
1,739,775	-				-0.6
1,739,775	-				-0.6
1,739,775	-				-1.3
1,739,775	-				-0.6
1,739,777	+				+0.3
1,739,778	-				-0.6
1,739,778	-				-2.6
1,739,778	-				-0.1
1,739,778	-				-0.9
1,739,778	-				-0.1
1,739,778	-				-1.6
1,739,815	+				+0.9
1,739,815	+				-0.3
1,739,816	-				-3.0
1,739,816	-				+0.3
1,739,817	+				+0.0
1,739,817	+				-0.1
1,739,817	+				-1.3
1,739,818	-				+1.3
1,739,821	+				+0.8
1,739,830	+				-0.6
1,739,831	-				-1.4
1,739,831	-				+0.0
1,739,831	-				-0.1
1,739,836	-				-2.8
1,739,836	-				+1.3
1,739,889	+				-1.4
1,739,889	+				+0.8
1,739,892	+				+0.2
1,739,893	-				-1.1
1,739,893	-				-2.1
1,739,900	-				-0.7
1,739,941	-				+0.1
1,739,950	+				+0.1
1,739,966	+				+0.1
1,739,967	-				-0.5
1,740,012	-				-0.4
1,740,012	-				-2.1
1,740,032	-				-1.2
1,740,095	+				+0.0
1,740,095	+				+0.1
1,740,095	+				+0.1
1,740,095	+				+0.2
1,740,095	+				-0.0
1,740,095	+				-0.0
1,740,095	+				-1.8
1,740,096	-				-0.1
1,740,096	-				-1.8
1,740,131	+				-0.3
1,740,131	+				-1.3
1,740,131	+				-0.7
1,740,131	+				+0.8
1,740,132	-				+0.4
1,740,132	-				-1.2
1,740,132	-				+0.2
1,740,132	-				-0.3
1,740,164	+				-0.5
1,740,164	+				+0.2
1,740,164	+				-0.6
1,740,165	-				-1.6
1,740,173	+				+0.1
1,740,173	+				+0.7
1,740,199	+				-0.1
1,740,199	+				-1.1
1,740,199	+				+0.1
1,740,200	-				+0.3
1,740,200	-				-0.8
1,740,201	+				+1.2
1,740,201	+				-1.6
1,740,202	-				-1.2
1,740,202	-				-0.1
1,740,275	+		LRK54_RS07950	0.11	+0.1
1,740,275	+		LRK54_RS07950	0.11	+0.6
1,740,275	+		LRK54_RS07950	0.11	+0.5
1,740,276	-		LRK54_RS07950	0.12	-1.4
1,740,276	-		LRK54_RS07950	0.12	-3.2
1,740,276	-		LRK54_RS07950	0.12	-1.4
1,740,301	-		LRK54_RS07950	0.17	-1.6
1,740,439	+		LRK54_RS07950	0.50	+0.2
1,740,439	+		LRK54_RS07950	0.50	-0.2
1,740,465	+		LRK54_RS07950	0.56	-1.0
1,740,466	-		LRK54_RS07950	0.57	-1.3
1,740,466	-		LRK54_RS07950	0.57	+1.0
1,740,502	-		LRK54_RS07950	0.65	-0.9
1,740,684	+				-1.0
1,740,685	-				-0.3
1,740,712	+				-1.3
1,740,712	+				+1.6
1,740,712	+				-0.8
1,740,712	+				+0.3
1,740,712	+				-1.7
1,740,712	+				+0.0
1,740,713	-				-1.1
1,740,713	-				-0.8
1,740,713	-				-1.0
1,740,727	+				+0.1
1,740,768	+				-0.5
1,740,768	+				-0.5
1,740,768	+				-0.0
1,740,768	+				-0.0
1,740,768	+				-2.4
1,740,769	-				+0.3
1,740,769	-				+0.2
1,740,769	-				-1.3
1,740,769	-				+0.9
1,740,769	-				+1.9
1,740,769	-				-1.3
1,740,901	+		LRK54_RS07955	0.47	+0.9
1,740,901	+		LRK54_RS07955	0.47	-0.6
1,740,901	+		LRK54_RS07955	0.47	-1.6
1,740,901	+		LRK54_RS07955	0.47	+2.2
1,740,901	+		LRK54_RS07955	0.47	-0.0
1,740,901	+		LRK54_RS07955	0.47	-0.2
1,740,901	+		LRK54_RS07955	0.47	-2.0
1,740,901	+		LRK54_RS07955	0.47	-1.6
1,740,901	+		LRK54_RS07955	0.47	-2.3
1,740,902	-		LRK54_RS07955	0.48	-0.6
1,740,902	-		LRK54_RS07955	0.48	+1.9
1,740,902	-		LRK54_RS07955	0.48	+1.0
1,740,902	-		LRK54_RS07955	0.48	-0.2
1,740,902	-		LRK54_RS07955	0.48	+0.0
1,740,943	+		LRK54_RS07955	0.67	-0.2
1,740,943	+		LRK54_RS07955	0.67	-0.3
1,740,944	-		LRK54_RS07955	0.67	-0.5
1,740,944	-		LRK54_RS07955	0.67	+0.2
1,740,944	-		LRK54_RS07955	0.67	+0.4
1,740,978	+		LRK54_RS07955	0.83	-0.5
1,740,978	+		LRK54_RS07955	0.83	-0.4
1,740,978	+		LRK54_RS07955	0.83	-0.1
1,740,979	-		LRK54_RS07955	0.83	-0.1
1,740,979	-		LRK54_RS07955	0.83	+0.4
1,741,089	+		LRK54_RS07960	0.13	+0.9
1,741,090	-		LRK54_RS07960	0.14	+0.8
1,741,302	-		LRK54_RS07960	0.52	+0.4
1,741,302	-		LRK54_RS07960	0.52	-2.4
1,741,302	-		LRK54_RS07960	0.52	+0.9
1,741,302	-		LRK54_RS07960	0.52	+1.2
1,741,493	+		LRK54_RS07960	0.87	+0.1
1,741,493	+		LRK54_RS07960	0.87	+0.4
1,741,493	+		LRK54_RS07960	0.87	-0.7
1,741,493	+		LRK54_RS07960	0.87	+1.1
1,741,493	+		LRK54_RS07960	0.87	+0.2
1,741,493	+		LRK54_RS07960	0.87	+1.1
1,741,493	+		LRK54_RS07960	0.87	+0.9
1,741,494	-		LRK54_RS07960	0.88	+0.3
1,741,494	-		LRK54_RS07960	0.88	+0.1
1,741,494	-		LRK54_RS07960	0.88	+1.1
1,741,494	-		LRK54_RS07960	0.88	-0.6
1,741,494	-		LRK54_RS07960	0.88	-1.0
1,741,494	-		LRK54_RS07960	0.88	+0.4
1,741,494	-		LRK54_RS07960	0.88	-0.1
1,741,494	-		LRK54_RS07960	0.88	-0.4
1,741,510	+				+0.5
1,741,510	+				+1.6
1,741,511	-				-1.4
1,741,511	-				-0.1
1,741,532	+				-1.1
1,741,532	+				+0.4
1,741,532	+				+0.3
1,741,533	-				+0.0
1,741,559	+				-0.2
1,741,559	+				-0.3
1,741,559	+				-1.9
1,741,559	+				-0.4
1,741,559	+				-0.1
1,741,560	-				+1.5
1,741,560	-				+0.3
1,741,560	-				-0.1