Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_21760 and IAI47_21765 are separated by 103 nucleotides IAI47_21765 and IAI47_21770 overlap by 4 nucleotides IAI47_21770 and IAI47_21775 are separated by 117 nucleotides
IAI47_21760: IAI47_21760 - CitMHS family transporter, at 96,647 to 97,960
_21760
IAI47_21765: IAI47_21765 - YoeB-YefM toxin-antitoxin system antitoxin YefM, at 98,064 to 98,315
_21765
IAI47_21770: IAI47_21770 - Txe/YoeB family addiction module toxin, at 98,312 to 98,566
_21770
IAI47_21775: IAI47_21775 - excinuclease ABC subunit UvrA, at 98,684 to 101,218
_21775
Position (kb) 98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 97.357 kb on + strand, within IAI47_21760 at 97.357 kb on + strand, within IAI47_21760 at 97.358 kb on - strand, within IAI47_21760 at 97.358 kb on - strand, within IAI47_21760 at 97.380 kb on + strand, within IAI47_21760 at 97.404 kb on + strand, within IAI47_21760 at 97.405 kb on - strand, within IAI47_21760 at 97.405 kb on - strand, within IAI47_21760 at 97.426 kb on + strand, within IAI47_21760 at 97.427 kb on - strand, within IAI47_21760 at 97.427 kb on - strand, within IAI47_21760 at 97.460 kb on + strand, within IAI47_21760 at 97.460 kb on + strand, within IAI47_21760 at 97.460 kb on + strand, within IAI47_21760 at 97.461 kb on - strand, within IAI47_21760 at 97.461 kb on - strand, within IAI47_21760 at 97.461 kb on - strand, within IAI47_21760 at 97.546 kb on + strand, within IAI47_21760 at 97.577 kb on - strand, within IAI47_21760 at 97.634 kb on + strand, within IAI47_21760 at 97.634 kb on + strand, within IAI47_21760 at 97.635 kb on - strand, within IAI47_21760 at 97.635 kb on - strand, within IAI47_21760 at 97.635 kb on - strand, within IAI47_21760 at 97.644 kb on + strand, within IAI47_21760 at 97.645 kb on - strand, within IAI47_21760 at 97.645 kb on - strand, within IAI47_21760 at 97.645 kb on - strand, within IAI47_21760 at 97.645 kb on - strand, within IAI47_21760 at 97.648 kb on + strand, within IAI47_21760 at 97.649 kb on - strand, within IAI47_21760 at 97.681 kb on + strand, within IAI47_21760 at 97.681 kb on + strand, within IAI47_21760 at 97.681 kb on + strand, within IAI47_21760 at 97.681 kb on + strand, within IAI47_21760 at 97.681 kb on + strand, within IAI47_21760 at 97.681 kb on + strand, within IAI47_21760 at 97.681 kb on + strand, within IAI47_21760 at 97.681 kb on + strand, within IAI47_21760 at 97.681 kb on + strand, within IAI47_21760 at 97.682 kb on - strand, within IAI47_21760 at 97.682 kb on - strand, within IAI47_21760 at 97.682 kb on - strand, within IAI47_21760 at 97.682 kb on - strand, within IAI47_21760 at 97.682 kb on - strand, within IAI47_21760 at 97.701 kb on - strand, within IAI47_21760 at 97.701 kb on - strand, within IAI47_21760 at 97.701 kb on - strand, within IAI47_21760 at 97.742 kb on + strand, within IAI47_21760 at 97.742 kb on + strand, within IAI47_21760 at 97.742 kb on + strand, within IAI47_21760 at 97.743 kb on - strand, within IAI47_21760 at 97.743 kb on - strand, within IAI47_21760 at 97.750 kb on + strand, within IAI47_21760 at 97.815 kb on + strand, within IAI47_21760 at 97.827 kb on - strand, within IAI47_21760 at 97.909 kb on - strand at 97.909 kb on - strand at 97.959 kb on - strand at 98.030 kb on + strand at 98.031 kb on - strand at 98.031 kb on - strand at 98.042 kb on + strand at 98.042 kb on + strand at 98.042 kb on + strand at 98.042 kb on + strand at 98.080 kb on - strand at 98.197 kb on - strand, within IAI47_21765 at 98.199 kb on - strand, within IAI47_21765 at 98.199 kb on - strand, within IAI47_21765 at 98.238 kb on - strand, within IAI47_21765 at 98.265 kb on - strand, within IAI47_21765 at 98.265 kb on - strand, within IAI47_21765 at 98.306 kb on + strand at 98.306 kb on + strand at 98.306 kb on + strand at 98.306 kb on + strand at 98.306 kb on + strand at 98.306 kb on + strand at 98.306 kb on + strand at 98.307 kb on - strand at 98.307 kb on - strand at 98.307 kb on - strand at 98.307 kb on - strand at 98.307 kb on - strand at 98.348 kb on + strand, within IAI47_21770 at 98.348 kb on + strand, within IAI47_21770 at 98.348 kb on + strand, within IAI47_21770 at 98.348 kb on + strand, within IAI47_21770 at 98.349 kb on - strand, within IAI47_21770 at 98.349 kb on - strand, within IAI47_21770 at 98.349 kb on - strand, within IAI47_21770 at 98.349 kb on - strand, within IAI47_21770 at 98.354 kb on + strand, within IAI47_21770 at 98.355 kb on - strand, within IAI47_21770 at 98.355 kb on - strand, within IAI47_21770 at 98.355 kb on - strand, within IAI47_21770 at 98.365 kb on + strand, within IAI47_21770 at 98.365 kb on + strand, within IAI47_21770 at 98.365 kb on + strand, within IAI47_21770 at 98.461 kb on + strand, within IAI47_21770 at 98.461 kb on + strand, within IAI47_21770 at 98.462 kb on - strand, within IAI47_21770 at 98.462 kb on - strand, within IAI47_21770 at 98.462 kb on - strand, within IAI47_21770 at 98.462 kb on - strand, within IAI47_21770 at 98.513 kb on + strand, within IAI47_21770 at 98.513 kb on + strand, within IAI47_21770 at 98.514 kb on - strand, within IAI47_21770 at 98.535 kb on + strand, within IAI47_21770 at 98.535 kb on + strand, within IAI47_21770 at 98.536 kb on - strand, within IAI47_21770 at 98.538 kb on + strand, within IAI47_21770 at 98.538 kb on + strand, within IAI47_21770 at 98.538 kb on + strand, within IAI47_21770 at 98.539 kb on - strand, within IAI47_21770 at 98.613 kb on - strand at 98.672 kb on + strand at 98.672 kb on + strand at 98.672 kb on + strand at 98.672 kb on + strand at 98.685 kb on + strand at 98.685 kb on + strand at 98.857 kb on + strand at 98.857 kb on + strand at 98.857 kb on + strand at 98.857 kb on + strand at 98.857 kb on + strand at 98.857 kb on + strand at 98.857 kb on + strand at 98.857 kb on + strand at 98.857 kb on + strand at 98.858 kb on - strand at 98.858 kb on - strand at 98.858 kb on - strand at 98.858 kb on - strand at 98.858 kb on - strand at 98.858 kb on - strand at 98.858 kb on - strand at 98.858 kb on - strand at 98.858 kb on - strand at 98.859 kb on + strand at 98.860 kb on + strand at 98.860 kb on + strand at 98.860 kb on + strand at 98.860 kb on + strand at 98.860 kb on + strand at 98.860 kb on + strand at 98.860 kb on + strand at 98.861 kb on - strand at 98.861 kb on - strand at 98.861 kb on - strand at 98.861 kb on - strand at 98.872 kb on + strand at 98.872 kb on + strand at 98.872 kb on + strand at 98.923 kb on + strand at 98.923 kb on + strand at 98.923 kb on + strand at 98.923 kb on + strand at 98.924 kb on - strand at 98.924 kb on - strand at 98.924 kb on - strand at 98.924 kb on - strand at 98.929 kb on + strand at 98.930 kb on - strand at 98.970 kb on + strand, within IAI47_21775 at 98.970 kb on + strand, within IAI47_21775 at 98.970 kb on + strand, within IAI47_21775 at 98.970 kb on + strand, within IAI47_21775 at 98.970 kb on + strand, within IAI47_21775 at 98.970 kb on + strand, within IAI47_21775 at 98.971 kb on - strand, within IAI47_21775 at 98.971 kb on - strand, within IAI47_21775 at 98.971 kb on - strand, within IAI47_21775 at 98.971 kb on - strand, within IAI47_21775 at 98.971 kb on - strand, within IAI47_21775 at 98.977 kb on + strand, within IAI47_21775 at 98.977 kb on + strand, within IAI47_21775 at 98.978 kb on - strand, within IAI47_21775 at 98.978 kb on - strand, within IAI47_21775 at 98.978 kb on - strand, within IAI47_21775 at 98.983 kb on + strand, within IAI47_21775 at 98.983 kb on + strand, within IAI47_21775 at 98.983 kb on + strand, within IAI47_21775 at 98.984 kb on - strand, within IAI47_21775 at 98.984 kb on - strand, within IAI47_21775 at 98.990 kb on + strand, within IAI47_21775 at 99.072 kb on + strand, within IAI47_21775 at 99.072 kb on + strand, within IAI47_21775 at 99.073 kb on - strand, within IAI47_21775 at 99.073 kb on - strand, within IAI47_21775 at 99.101 kb on + strand, within IAI47_21775 at 99.115 kb on + strand, within IAI47_21775 at 99.115 kb on + strand, within IAI47_21775 at 99.115 kb on + strand, within IAI47_21775 at 99.116 kb on - strand, within IAI47_21775 at 99.123 kb on + strand, within IAI47_21775 at 99.123 kb on + strand, within IAI47_21775 at 99.123 kb on + strand, within IAI47_21775 at 99.124 kb on - strand, within IAI47_21775 at 99.124 kb on - strand, within IAI47_21775 at 99.217 kb on + strand, within IAI47_21775 at 99.218 kb on - strand, within IAI47_21775 at 99.218 kb on - strand, within IAI47_21775 at 99.219 kb on + strand, within IAI47_21775 at 99.219 kb on + strand, within IAI47_21775 at 99.219 kb on + strand, within IAI47_21775 at 99.219 kb on + strand, within IAI47_21775 at 99.219 kb on + strand, within IAI47_21775 at 99.219 kb on + strand, within IAI47_21775 at 99.219 kb on + strand, within IAI47_21775 at 99.219 kb on + strand, within IAI47_21775 at 99.219 kb on + strand, within IAI47_21775 at 99.220 kb on - strand, within IAI47_21775 at 99.220 kb on - strand, within IAI47_21775 at 99.220 kb on - strand, within IAI47_21775 at 99.265 kb on + strand, within IAI47_21775 at 99.265 kb on + strand, within IAI47_21775 at 99.401 kb on - strand, within IAI47_21775 at 99.401 kb on - strand, within IAI47_21775 at 99.420 kb on + strand, within IAI47_21775 at 99.420 kb on + strand, within IAI47_21775 at 99.420 kb on + strand, within IAI47_21775 at 99.420 kb on + strand, within IAI47_21775 at 99.420 kb on + strand, within IAI47_21775 at 99.421 kb on - strand, within IAI47_21775 at 99.421 kb on - strand, within IAI47_21775 at 99.421 kb on - strand, within IAI47_21775 at 99.454 kb on + strand, within IAI47_21775 at 99.455 kb on - strand, within IAI47_21775
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 97,357 + IAI47_21760 0.54 +1.4 97,357 + IAI47_21760 0.54 -0.5 97,358 - IAI47_21760 0.54 +1.1 97,358 - IAI47_21760 0.54 +0.7 97,380 + IAI47_21760 0.56 +0.4 97,404 + IAI47_21760 0.58 -0.2 97,405 - IAI47_21760 0.58 +0.2 97,405 - IAI47_21760 0.58 -0.5 97,426 + IAI47_21760 0.59 +2.4 97,427 - IAI47_21760 0.59 -1.5 97,427 - IAI47_21760 0.59 +0.4 97,460 + IAI47_21760 0.62 +1.6 97,460 + IAI47_21760 0.62 +1.4 97,460 + IAI47_21760 0.62 -0.3 97,461 - IAI47_21760 0.62 -0.0 97,461 - IAI47_21760 0.62 -0.6 97,461 - IAI47_21760 0.62 -0.3 97,546 + IAI47_21760 0.68 +2.8 97,577 - IAI47_21760 0.71 +0.5 97,634 + IAI47_21760 0.75 +0.0 97,634 + IAI47_21760 0.75 -2.5 97,635 - IAI47_21760 0.75 +1.1 97,635 - IAI47_21760 0.75 -0.3 97,635 - IAI47_21760 0.75 +0.2 97,644 + IAI47_21760 0.76 +0.9 97,645 - IAI47_21760 0.76 -2.7 97,645 - IAI47_21760 0.76 -0.2 97,645 - IAI47_21760 0.76 -2.8 97,645 - IAI47_21760 0.76 +1.6 97,648 + IAI47_21760 0.76 -2.3 97,649 - IAI47_21760 0.76 +0.6 97,681 + IAI47_21760 0.79 -2.1 97,681 + IAI47_21760 0.79 -2.2 97,681 + IAI47_21760 0.79 +1.4 97,681 + IAI47_21760 0.79 -0.2 97,681 + IAI47_21760 0.79 -2.3 97,681 + IAI47_21760 0.79 -0.4 97,681 + IAI47_21760 0.79 +1.4 97,681 + IAI47_21760 0.79 -0.9 97,681 + IAI47_21760 0.79 -1.3 97,682 - IAI47_21760 0.79 +2.0 97,682 - IAI47_21760 0.79 +1.6 97,682 - IAI47_21760 0.79 -0.4 97,682 - IAI47_21760 0.79 +0.9 97,682 - IAI47_21760 0.79 +1.6 97,701 - IAI47_21760 0.80 +2.6 97,701 - IAI47_21760 0.80 -1.4 97,701 - IAI47_21760 0.80 +1.6 97,742 + IAI47_21760 0.83 -1.6 97,742 + IAI47_21760 0.83 +1.2 97,742 + IAI47_21760 0.83 +0.1 97,743 - IAI47_21760 0.83 -0.0 97,743 - IAI47_21760 0.83 +0.3 97,750 + IAI47_21760 0.84 -0.0 97,815 + IAI47_21760 0.89 -0.7 97,827 - IAI47_21760 0.90 +0.4 97,909 - +1.9 97,909 - -1.9 97,959 - -0.8 98,030 + -0.7 98,031 - +0.5 98,031 - -1.4 98,042 + +0.0 98,042 + -0.2 98,042 + -0.3 98,042 + -0.3 98,080 - +0.8 98,197 - IAI47_21765 0.53 -1.8 98,199 - IAI47_21765 0.54 -0.9 98,199 - IAI47_21765 0.54 -1.2 98,238 - IAI47_21765 0.69 -1.0 98,265 - IAI47_21765 0.80 -1.4 98,265 - IAI47_21765 0.80 +2.0 98,306 + +0.2 98,306 + -2.0 98,306 + +0.7 98,306 + +3.6 98,306 + -1.8 98,306 + -0.1 98,306 + -1.2 98,307 - -0.8 98,307 - +0.4 98,307 - +2.2 98,307 - +2.4 98,307 - -2.8 98,348 + IAI47_21770 0.14 +0.2 98,348 + IAI47_21770 0.14 -0.7 98,348 + IAI47_21770 0.14 +1.4 98,348 + IAI47_21770 0.14 -2.3 98,349 - IAI47_21770 0.15 -0.6 98,349 - IAI47_21770 0.15 -2.2 98,349 - IAI47_21770 0.15 +1.1 98,349 - IAI47_21770 0.15 -1.8 98,354 + IAI47_21770 0.16 -1.2 98,355 - IAI47_21770 0.17 -1.8 98,355 - IAI47_21770 0.17 -0.4 98,355 - IAI47_21770 0.17 -0.6 98,365 + IAI47_21770 0.21 -0.9 98,365 + IAI47_21770 0.21 -0.1 98,365 + IAI47_21770 0.21 +2.3 98,461 + IAI47_21770 0.58 -0.4 98,461 + IAI47_21770 0.58 -1.8 98,462 - IAI47_21770 0.59 -0.4 98,462 - IAI47_21770 0.59 -2.9 98,462 - IAI47_21770 0.59 +1.8 98,462 - IAI47_21770 0.59 -0.2 98,513 + IAI47_21770 0.79 -1.6 98,513 + IAI47_21770 0.79 +0.8 98,514 - IAI47_21770 0.79 -2.3 98,535 + IAI47_21770 0.87 -1.8 98,535 + IAI47_21770 0.87 -0.7 98,536 - IAI47_21770 0.88 -0.4 98,538 + IAI47_21770 0.89 -1.5 98,538 + IAI47_21770 0.89 -1.6 98,538 + IAI47_21770 0.89 -3.4 98,539 - IAI47_21770 0.89 -0.6 98,613 - +1.6 98,672 + +0.8 98,672 + +1.3 98,672 + -1.7 98,672 + +0.1 98,685 + +1.1 98,685 + +1.9 98,857 + +1.6 98,857 + +0.3 98,857 + +0.8 98,857 + +1.8 98,857 + -2.1 98,857 + +1.1 98,857 + -0.7 98,857 + +0.4 98,857 + -0.8 98,858 - -0.4 98,858 - -0.3 98,858 - -2.4 98,858 - -1.1 98,858 - +3.6 98,858 - -2.1 98,858 - -0.1 98,858 - -0.1 98,858 - -1.2 98,859 + -1.4 98,860 + -1.3 98,860 + +0.9 98,860 + -0.1 98,860 + +1.3 98,860 + +1.1 98,860 + +0.9 98,860 + -1.8 98,861 - -0.5 98,861 - -1.6 98,861 - -0.9 98,861 - +1.2 98,872 + +0.6 98,872 + +1.7 98,872 + -1.5 98,923 + +0.3 98,923 + +4.3 98,923 + +0.8 98,923 + -1.3 98,924 - -2.2 98,924 - +2.0 98,924 - +0.2 98,924 - +1.9 98,929 + -2.2 98,930 - -0.1 98,970 + IAI47_21775 0.11 +2.7 98,970 + IAI47_21775 0.11 +2.6 98,970 + IAI47_21775 0.11 +0.6 98,970 + IAI47_21775 0.11 +0.2 98,970 + IAI47_21775 0.11 +1.2 98,970 + IAI47_21775 0.11 -2.5 98,971 - IAI47_21775 0.11 +1.0 98,971 - IAI47_21775 0.11 -0.6 98,971 - IAI47_21775 0.11 -0.0 98,971 - IAI47_21775 0.11 -1.7 98,971 - IAI47_21775 0.11 -1.2 98,977 + IAI47_21775 0.12 -0.0 98,977 + IAI47_21775 0.12 -0.5 98,978 - IAI47_21775 0.12 -1.2 98,978 - IAI47_21775 0.12 -0.9 98,978 - IAI47_21775 0.12 -0.7 98,983 + IAI47_21775 0.12 +0.5 98,983 + IAI47_21775 0.12 -1.9 98,983 + IAI47_21775 0.12 +2.0 98,984 - IAI47_21775 0.12 +1.4 98,984 - IAI47_21775 0.12 +1.3 98,990 + IAI47_21775 0.12 +1.7 99,072 + IAI47_21775 0.15 +0.1 99,072 + IAI47_21775 0.15 -0.4 99,073 - IAI47_21775 0.15 +1.4 99,073 - IAI47_21775 0.15 -1.0 99,101 + IAI47_21775 0.16 -1.1 99,115 + IAI47_21775 0.17 +0.6 99,115 + IAI47_21775 0.17 +0.2 99,115 + IAI47_21775 0.17 -2.9 99,116 - IAI47_21775 0.17 -0.2 99,123 + IAI47_21775 0.17 -0.4 99,123 + IAI47_21775 0.17 +2.8 99,123 + IAI47_21775 0.17 -0.6 99,124 - IAI47_21775 0.17 -0.6 99,124 - IAI47_21775 0.17 -0.6 99,217 + IAI47_21775 0.21 +0.4 99,218 - IAI47_21775 0.21 -2.3 99,218 - IAI47_21775 0.21 +0.8 99,219 + IAI47_21775 0.21 +0.2 99,219 + IAI47_21775 0.21 +2.0 99,219 + IAI47_21775 0.21 +2.3 99,219 + IAI47_21775 0.21 +0.5 99,219 + IAI47_21775 0.21 -0.7 99,219 + IAI47_21775 0.21 -1.8 99,219 + IAI47_21775 0.21 +3.6 99,219 + IAI47_21775 0.21 +1.4 99,219 + IAI47_21775 0.21 -1.8 99,220 - IAI47_21775 0.21 +1.8 99,220 - IAI47_21775 0.21 -1.8 99,220 - IAI47_21775 0.21 -1.2 99,265 + IAI47_21775 0.23 +0.0 99,265 + IAI47_21775 0.23 +1.1 99,401 - IAI47_21775 0.28 +1.7 99,401 - IAI47_21775 0.28 +0.6 99,420 + IAI47_21775 0.29 -0.9 99,420 + IAI47_21775 0.29 +3.0 99,420 + IAI47_21775 0.29 +1.8 99,420 + IAI47_21775 0.29 -1.4 99,420 + IAI47_21775 0.29 +0.9 99,421 - IAI47_21775 0.29 +0.4 99,421 - IAI47_21775 0.29 +1.7 99,421 - IAI47_21775 0.29 -0.9 99,454 + IAI47_21775 0.30 +1.8 99,455 - IAI47_21775 0.30 +1.7
Or see this region's nucleotide sequence