Strain Fitness in Pantoea sp. MT58 around IAI47_21550

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
48,955	+				-1.0
48,956	-				+0.6
49,034	-				-2.1
49,042	+				+1.8
49,064	+				-0.6
49,105	-				-2.3
49,113	+				+2.4
49,114	-				+0.4
49,156	-				+1.2
49,242	-		IAI47_21545	0.12	+0.6
49,263	-		IAI47_21545	0.17	+3.0
49,268	+		IAI47_21545	0.18	+4.0
49,270	+		IAI47_21545	0.18	+2.4
49,271	-		IAI47_21545	0.18	-2.4
49,357	+		IAI47_21545	0.37	-1.1
49,357	+		IAI47_21545	0.37	-1.2
49,357	+		IAI47_21545	0.37	-1.9
49,357	+		IAI47_21545	0.37	-1.2
49,357	+		IAI47_21545	0.37	+0.6
49,357	+		IAI47_21545	0.37	+0.5
49,358	-		IAI47_21545	0.37	+3.0
49,358	-		IAI47_21545	0.37	-0.4
49,359	+		IAI47_21545	0.37	-0.6
49,359	+		IAI47_21545	0.37	-0.2
49,359	+		IAI47_21545	0.37	-0.2
49,359	+		IAI47_21545	0.37	+1.1
49,360	-		IAI47_21545	0.37	-2.5
49,360	-		IAI47_21545	0.37	-1.8
49,360	-		IAI47_21545	0.37	-0.9
49,360	-		IAI47_21545	0.37	+1.0
49,360	-		IAI47_21545	0.37	-1.8
49,378	+		IAI47_21545	0.41	-0.5
49,397	+		IAI47_21545	0.45	+0.4
49,398	-		IAI47_21545	0.45	+0.0
49,424	+		IAI47_21545	0.51	+0.6
49,424	+		IAI47_21545	0.51	+0.5
49,424	+		IAI47_21545	0.51	-2.7
49,425	-		IAI47_21545	0.51	+0.6
49,425	-		IAI47_21545	0.51	-0.8
49,425	-		IAI47_21545	0.51	-0.2
49,499	+		IAI47_21545	0.67	+0.2
49,499	+		IAI47_21545	0.67	+2.8
49,500	-		IAI47_21545	0.67	-2.7
49,500	-		IAI47_21545	0.67	+0.2
49,500	-		IAI47_21545	0.67	-0.9
49,500	-		IAI47_21545	0.67	-1.2
49,500	-		IAI47_21545	0.67	-0.6
49,500	-		IAI47_21545	0.67	+1.7
49,502	+		IAI47_21545	0.67	+0.1
49,502	+		IAI47_21545	0.67	-0.1
49,502	+		IAI47_21545	0.67	+3.2
49,502	+		IAI47_21545	0.67	+0.6
49,503	-		IAI47_21545	0.68	-1.6
49,503	-		IAI47_21545	0.68	+0.3
49,503	-		IAI47_21545	0.68	+0.9
49,503	-		IAI47_21545	0.68	+1.4
49,503	-		IAI47_21545	0.68	-1.2
49,503	-		IAI47_21545	0.68	+1.1
49,525	-		IAI47_21545	0.72	-0.0
49,526	+		IAI47_21545	0.72	+2.6
49,527	-		IAI47_21545	0.73	-2.9
49,547	+		IAI47_21545	0.77	+0.5
49,548	-		IAI47_21545	0.77	+0.2
49,566	+		IAI47_21545	0.81	+2.4
49,566	+		IAI47_21545	0.81	-1.4
49,567	-		IAI47_21545	0.81	+0.4
49,568	+		IAI47_21545	0.81	+0.3
49,568	+		IAI47_21545	0.81	+2.7
49,568	+		IAI47_21545	0.81	-0.7
49,568	+		IAI47_21545	0.81	+1.4
49,568	+		IAI47_21545	0.81	-0.6
49,569	-		IAI47_21545	0.82	+0.1
49,569	-		IAI47_21545	0.82	-3.0
49,569	-		IAI47_21545	0.82	+0.8
49,569	-		IAI47_21545	0.82	+0.6
49,574	+		IAI47_21545	0.83	-0.6
49,574	+		IAI47_21545	0.83	+0.4
49,575	-		IAI47_21545	0.83	-0.3
49,575	-		IAI47_21545	0.83	+0.5
49,578	+		IAI47_21545	0.83	+0.7
49,579	-		IAI47_21545	0.84	-0.9
49,579	-		IAI47_21545	0.84	-1.3
49,653	+				+1.4
49,654	-				+0.2
49,677	-				+0.5
49,728	-				-0.1
49,732	+				+1.1
49,733	-				-0.0
49,733	-				-0.4
49,733	-				+1.8
49,734	+				+0.7
49,734	+				-1.5
49,734	+				-0.2
49,735	+				-1.8
49,735	-				-1.4
49,735	-				+1.1
49,735	-				+1.2
49,735	-				-1.4
49,782	+				+1.0
49,877	-				-0.9
49,887	+				+0.2
49,900	-				+0.6
49,918	+				+1.2
49,948	-				+0.5
49,948	-				+1.3
49,949	+				+0.6
49,949	+				-1.8
49,950	-				-0.2
49,950	-				-1.4
49,954	-				+1.1
49,964	-				+0.5
49,994	-				-2.4
50,000	+				+2.0
50,020	+				-0.2
50,020	+				-2.6
50,021	-				+0.8
50,021	-				+1.0
50,021	-				-1.4
50,021	-				+0.1
50,021	-				-0.9
50,021	-				+1.8
50,024	+				-2.1
50,024	+				-3.1
50,025	-				+1.6
50,025	-				+0.5
50,031	+				+1.1
50,044	+				+0.2
50,044	+				+1.4
50,045	-				-0.1
50,045	-				+0.5
50,045	-				-0.3
50,045	-				-2.5
50,045	-				-2.1
50,153	+		IAI47_21550	0.17	+3.4
50,154	-		IAI47_21550	0.17	-1.6
50,201	+		IAI47_21550	0.21	-0.3
50,202	-		IAI47_21550	0.21	+0.9
50,202	-		IAI47_21550	0.21	+1.4
50,207	-		IAI47_21550	0.21	-0.9
50,264	+		IAI47_21550	0.26	+1.8
50,265	-		IAI47_21550	0.26	+1.1
50,383	-		IAI47_21550	0.36	+0.2
50,383	-		IAI47_21550	0.36	-0.2
50,392	+		IAI47_21550	0.36	-0.4
50,392	+		IAI47_21550	0.36	-0.3
50,393	-		IAI47_21550	0.36	+2.5
50,426	+		IAI47_21550	0.39	+2.1
50,426	+		IAI47_21550	0.39	-0.4
50,426	+		IAI47_21550	0.39	+0.8
50,426	+		IAI47_21550	0.39	+0.1
50,427	-		IAI47_21550	0.39	+0.8
50,427	-		IAI47_21550	0.39	+1.0
50,427	-		IAI47_21550	0.39	-0.9
50,427	-		IAI47_21550	0.39	+1.5
50,427	-		IAI47_21550	0.39	+0.7
50,439	-		IAI47_21550	0.40	+0.7
50,439	-		IAI47_21550	0.40	+2.1
50,439	-		IAI47_21550	0.40	+1.1
50,439	-		IAI47_21550	0.40	+1.8
50,439	-		IAI47_21550	0.40	-0.2
50,439	-		IAI47_21550	0.40	-2.1
50,440	+		IAI47_21550	0.40	+0.7
50,441	-		IAI47_21550	0.40	-0.6
50,459	+		IAI47_21550	0.42	+0.0
50,459	+		IAI47_21550	0.42	+0.6
50,459	+		IAI47_21550	0.42	-0.4
50,459	+		IAI47_21550	0.42	-0.6
50,460	-		IAI47_21550	0.42	-1.0
50,460	-		IAI47_21550	0.42	+2.5
50,460	-		IAI47_21550	0.42	+2.0
50,460	-		IAI47_21550	0.42	+4.8
50,460	-		IAI47_21550	0.42	+2.8
50,462	+		IAI47_21550	0.42	-1.0
50,462	+		IAI47_21550	0.42	+2.7
50,463	-		IAI47_21550	0.42	+1.7
50,463	-		IAI47_21550	0.42	+2.0
50,463	-		IAI47_21550	0.42	-1.4
50,463	-		IAI47_21550	0.42	+1.4
50,463	-		IAI47_21550	0.42	-0.1
50,463	-		IAI47_21550	0.42	-0.6
50,463	-		IAI47_21550	0.42	+2.2
50,463	-		IAI47_21550	0.42	+0.1
50,463	-		IAI47_21550	0.42	+0.3
50,463	-		IAI47_21550	0.42	-0.4
50,472	+		IAI47_21550	0.43	-1.6
50,473	-		IAI47_21550	0.43	+1.2
50,473	-		IAI47_21550	0.43	+0.9
50,487	+		IAI47_21550	0.44	+2.6
50,511	+		IAI47_21550	0.46	+0.8
50,512	-		IAI47_21550	0.46	-0.5
50,532	+		IAI47_21550	0.48	-1.6
50,532	+		IAI47_21550	0.48	-2.8
50,532	+		IAI47_21550	0.48	+0.4
50,532	+		IAI47_21550	0.48	-1.2
50,532	+		IAI47_21550	0.48	+1.3
50,533	-		IAI47_21550	0.48	-1.1
50,533	-		IAI47_21550	0.48	-0.1
50,533	-		IAI47_21550	0.48	-0.9
50,533	-		IAI47_21550	0.48	+1.4
50,533	-		IAI47_21550	0.48	+0.3
50,533	-		IAI47_21550	0.48	+0.4
50,533	-		IAI47_21550	0.48	-1.0
50,533	-		IAI47_21550	0.48	-0.3
50,543	-		IAI47_21550	0.49	+1.2
50,543	-		IAI47_21550	0.49	+1.9
50,543	-		IAI47_21550	0.49	-0.8
50,543	-		IAI47_21550	0.49	+1.8
50,627	+		IAI47_21550	0.56	-2.3
50,628	-		IAI47_21550	0.56	+1.2
50,659	+		IAI47_21550	0.58	+2.0
50,659	+		IAI47_21550	0.58	-1.9
50,670	+		IAI47_21550	0.59	-0.5
50,670	+		IAI47_21550	0.59	+3.0
50,670	+		IAI47_21550	0.59	-3.4
50,671	-		IAI47_21550	0.59	-0.4
50,671	-		IAI47_21550	0.59	+0.4
50,671	-		IAI47_21550	0.59	-2.7
50,671	-		IAI47_21550	0.59	-1.9
50,691	+		IAI47_21550	0.61	+0.3
50,692	-		IAI47_21550	0.61	+0.1
50,710	-		IAI47_21550	0.63	+0.4
50,780	-		IAI47_21550	0.68	+0.4
51,005	-		IAI47_21550	0.87	+1.7
51,152	+				-0.5
51,153	-				+1.1
51,236	+				-0.6
51,236	+				-0.6
51,236	+				+0.2
51,237	-				-0.2
51,245	+				+1.6
51,245	+				-0.6
51,245	+				-0.4
51,246	-				+0.7
51,261	+				+3.8
51,261	+				-1.9
51,262	-				+0.2
51,262	-				-0.9
51,275	+				-0.5
51,275	+				-2.1
51,275	+				+1.4
51,275	+				+1.2
51,275	+				+1.3
51,275	+				+1.0
51,275	+				+0.2
51,275	+				-0.0
51,275	+				-0.2
51,275	+				+1.7
51,275	+				+0.8
51,275	+				+0.5
51,275	+				-2.2
51,275	+				-0.4
51,275	+				-1.9
51,275	+				-0.2
51,276	-				-3.7
51,276	-				-0.8
51,276	-				+1.1
51,276	-				-0.2
51,276	-				+1.2
51,276	-				+0.9
51,276	-				+2.1
51,276	-				-1.9
51,276	-				+0.3
51,276	-				-2.9
51,278	+				-2.1
51,278	+				-0.5
51,278	+				-0.6
51,278	+				-1.3
51,278	+				+1.7
51,278	+				-1.6
51,279	-				+0.6
51,279	-				-2.5
51,279	-				+0.2
51,279	-				+2.1
51,279	-				-1.6
51,279	-				+0.8
51,279	-				+0.0
51,311	+		IAI47_21555	0.11	+0.5
51,312	-		IAI47_21555	0.11	-2.8
51,312	-		IAI47_21555	0.11	-0.5
51,389	-		IAI47_21555	0.16	+0.6
51,403	+		IAI47_21555	0.17	-0.7
51,411	+		IAI47_21555	0.17	+0.7
51,411	+		IAI47_21555	0.17	-0.3
51,411	+		IAI47_21555	0.17	+0.2
51,411	+		IAI47_21555	0.17	-0.2
51,412	-		IAI47_21555	0.18	+1.1
51,412	-		IAI47_21555	0.18	+2.1
51,412	-		IAI47_21555	0.18	+0.1
51,412	-		IAI47_21555	0.18	-0.8
51,465	+		IAI47_21555	0.21	-0.4
51,465	+		IAI47_21555	0.21	+0.0
51,466	-		IAI47_21555	0.21	+0.8
51,466	-		IAI47_21555	0.21	+0.6
51,466	-		IAI47_21555	0.21	-2.3
51,466	-		IAI47_21555	0.21	-2.3
51,530	+		IAI47_21555	0.26	-1.4
51,558	+		IAI47_21555	0.28	+2.0
51,559	-		IAI47_21555	0.28	+1.7
51,559	-		IAI47_21555	0.28	+0.0
51,731	+		IAI47_21555	0.39	-2.1
51,731	+		IAI47_21555	0.39	+1.1
51,732	-		IAI47_21555	0.39	+2.1
51,732	-		IAI47_21555	0.39	-2.5
51,732	-		IAI47_21555	0.39	+2.2
51,732	-		IAI47_21555	0.39	-1.4
51,761	+		IAI47_21555	0.41	-2.2
51,761	+		IAI47_21555	0.41	+2.6
51,762	-		IAI47_21555	0.41	+0.2
51,762	-		IAI47_21555	0.41	-0.6
51,772	+		IAI47_21555	0.42	-0.8
51,772	+		IAI47_21555	0.42	+1.0
51,772	+		IAI47_21555	0.42	-1.6
51,772	+		IAI47_21555	0.42	-0.6
51,773	-		IAI47_21555	0.42	+1.1
51,789	+		IAI47_21555	0.43	-0.1
51,798	-		IAI47_21555	0.44	-1.4
51,821	+		IAI47_21555	0.46	-0.6
51,822	-		IAI47_21555	0.46	+0.2
51,822	-		IAI47_21555	0.46	+4.6
51,833	+		IAI47_21555	0.46	-1.4
51,866	-		IAI47_21555	0.49	-1.6
51,866	-		IAI47_21555	0.49	+0.6
51,881	+		IAI47_21555	0.50	-2.4
51,881	+		IAI47_21555	0.50	+1.8
51,911	+		IAI47_21555	0.52	-0.9
51,912	-		IAI47_21555	0.52	-1.9
51,912	-		IAI47_21555	0.52	-1.3
51,938	+		IAI47_21555	0.54	-0.6
51,939	-		IAI47_21555	0.54	+2.4
51,944	+		IAI47_21555	0.54	-0.1
51,944	+		IAI47_21555	0.54	+0.1
51,945	-		IAI47_21555	0.54	+0.4
51,945	-		IAI47_21555	0.54	+0.9
52,040	-		IAI47_21555	0.61	-0.8
52,040	-		IAI47_21555	0.61	+1.5
52,040	-		IAI47_21555	0.61	+1.4
52,040	-		IAI47_21555	0.61	-0.9
52,040	-		IAI47_21555	0.61	-1.3
52,053	-		IAI47_21555	0.61	-0.2
52,056	-		IAI47_21555	0.62	+1.0
52,056	-		IAI47_21555	0.62	+0.2
52,081	+		IAI47_21555	0.63	-0.0
52,081	+		IAI47_21555	0.63	+0.4
52,082	-		IAI47_21555	0.63	+0.8
52,082	-		IAI47_21555	0.63	-1.3
52,082	-		IAI47_21555	0.63	+1.1
52,082	-		IAI47_21555	0.63	-1.9
52,156	+		IAI47_21555	0.68	+0.2
52,157	-		IAI47_21555	0.69	+4.4
52,157	-		IAI47_21555	0.69	+0.9
52,157	-		IAI47_21555	0.69	-1.7
52,157	-		IAI47_21555	0.69	-2.2
52,157	-		IAI47_21555	0.69	+0.1
52,157	-		IAI47_21555	0.69	+0.7