Strain Fitness in Pantoea sp. MT58 around IAI47_06505

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,351,239	-		IAI47_06500	0.30	-0.2
1,351,282	+		IAI47_06500	0.34	-1.6
1,351,282	+		IAI47_06500	0.34	+1.7
1,351,295	+		IAI47_06500	0.35	-0.2
1,351,296	-		IAI47_06500	0.35	-1.5
1,351,296	-		IAI47_06500	0.35	+2.2
1,351,313	+		IAI47_06500	0.36	-1.3
1,351,342	+		IAI47_06500	0.38	-1.1
1,351,342	+		IAI47_06500	0.38	-0.7
1,351,342	+		IAI47_06500	0.38	-2.6
1,351,342	+		IAI47_06500	0.38	-2.8
1,351,342	+		IAI47_06500	0.38	-0.3
1,351,342	+		IAI47_06500	0.38	-0.9
1,351,343	-		IAI47_06500	0.38	-1.4
1,351,343	-		IAI47_06500	0.38	+0.0
1,351,343	-		IAI47_06500	0.38	-1.7
1,351,343	-		IAI47_06500	0.38	-1.8
1,351,343	-		IAI47_06500	0.38	-1.7
1,351,346	-		IAI47_06500	0.38	-0.9
1,351,346	-		IAI47_06500	0.38	+1.1
1,351,469	+		IAI47_06500	0.47	-1.0
1,351,509	+		IAI47_06500	0.50	-0.4
1,351,509	+		IAI47_06500	0.50	+1.0
1,351,510	-		IAI47_06500	0.50	-1.1
1,351,510	-		IAI47_06500	0.50	-0.3
1,351,510	-		IAI47_06500	0.50	+0.9
1,351,510	-		IAI47_06500	0.50	-1.9
1,351,592	+		IAI47_06500	0.56	+1.5
1,351,593	-		IAI47_06500	0.56	-0.7
1,351,628	-		IAI47_06500	0.59	-1.1
1,351,775	+		IAI47_06500	0.70	-0.3
1,351,775	+		IAI47_06500	0.70	-0.9
1,351,775	+		IAI47_06500	0.70	-0.3
1,351,776	-		IAI47_06500	0.70	+1.4
1,351,776	-		IAI47_06500	0.70	+0.1
1,351,867	+		IAI47_06500	0.77	-1.4
1,351,868	-		IAI47_06500	0.77	-1.2
1,351,868	-		IAI47_06500	0.77	+0.3
1,351,889	+		IAI47_06500	0.78	-1.6
1,351,890	-		IAI47_06500	0.78	-3.1
1,351,971	-		IAI47_06500	0.84	-1.3
1,351,971	-		IAI47_06500	0.84	+2.3
1,351,971	-		IAI47_06500	0.84	-1.6
1,351,983	-		IAI47_06500	0.85	-1.3
1,352,022	+		IAI47_06500	0.88	-1.0
1,352,022	+		IAI47_06500	0.88	+0.7
1,352,023	-		IAI47_06500	0.88	+0.2
1,352,056	+				-3.0
1,352,056	+				+1.7
1,352,056	+				-0.5
1,352,056	+				+1.9
1,352,056	+				-0.6
1,352,057	-				+2.0
1,352,057	-				-1.7
1,352,057	-				-1.1
1,352,069	+				+1.4
1,352,069	+				-1.4
1,352,069	+				+1.4
1,352,069	+				+0.1
1,352,069	+				-1.3
1,352,070	-				-1.0
1,352,070	-				+1.2
1,352,070	-				+0.4
1,352,126	-				+1.4
1,352,180	+				+0.3
1,352,181	-				-0.7
1,352,181	-				+1.0
1,352,187	-				-1.4
1,352,204	+				+1.0
1,352,204	+				+0.8
1,352,204	+				+1.7
1,352,204	+				-1.6
1,352,204	+				-0.4
1,352,204	+				+1.1
1,352,204	+				-0.9
1,352,205	-				+2.3
1,352,205	-				-3.4
1,352,205	-				-0.8
1,352,210	-				+2.1
1,352,219	+				+1.6
1,352,225	+				-2.2
1,352,449	+		IAI47_06505	0.12	+0.7
1,352,449	+		IAI47_06505	0.12	-0.1
1,352,449	+		IAI47_06505	0.12	-3.2
1,352,450	-		IAI47_06505	0.12	+0.1
1,352,466	-		IAI47_06505	0.12	-0.7
1,352,490	+		IAI47_06505	0.14	-3.0
1,352,533	+		IAI47_06505	0.16	+0.8
1,352,628	+		IAI47_06505	0.20	-1.1
1,352,628	+		IAI47_06505	0.20	-2.2
1,352,629	-		IAI47_06505	0.20	-1.6
1,352,629	-		IAI47_06505	0.20	-0.6
1,352,629	-		IAI47_06505	0.20	+0.7
1,352,675	+		IAI47_06505	0.22	+0.8
1,352,675	+		IAI47_06505	0.22	+0.6
1,352,675	+		IAI47_06505	0.22	-0.3
1,352,676	-		IAI47_06505	0.22	-1.6
1,352,708	+				+0.1
1,352,751	+		IAI47_06505	0.26	-2.6
1,352,813	+		IAI47_06505	0.29	-1.7
1,352,832	+		IAI47_06505	0.30	-1.0
1,352,832	+		IAI47_06505	0.30	-2.0
1,352,833	-		IAI47_06505	0.30	-2.7
1,352,833	-		IAI47_06505	0.30	-0.3
1,352,833	-		IAI47_06505	0.30	+1.0
1,352,833	-		IAI47_06505	0.30	-1.4
1,352,833	-		IAI47_06505	0.30	-2.0
1,352,838	-		IAI47_06505	0.30	-1.1
1,352,869	+		IAI47_06505	0.31	-1.3
1,352,869	+		IAI47_06505	0.31	-0.3
1,352,869	+		IAI47_06505	0.31	-3.4
1,352,869	+		IAI47_06505	0.31	+0.6
1,352,876	+		IAI47_06505	0.32	+0.1
1,352,876	+		IAI47_06505	0.32	+0.3
1,352,876	+		IAI47_06505	0.32	+2.3
1,352,876	+		IAI47_06505	0.32	+0.3
1,352,966	+		IAI47_06505	0.36	+0.4
1,352,966	+		IAI47_06505	0.36	+1.4
1,352,967	-		IAI47_06505	0.36	+0.7
1,353,051	-		IAI47_06505	0.40	-0.9
1,353,078	-		IAI47_06505	0.41	-4.3
1,353,080	-		IAI47_06505	0.41	+0.1
1,353,170	+		IAI47_06505	0.45	-0.6
1,353,201	-		IAI47_06505	0.47	+1.2
1,353,201	-		IAI47_06505	0.47	+0.3
1,353,201	-		IAI47_06505	0.47	-0.8
1,353,239	+		IAI47_06505	0.48	+0.3
1,353,239	+		IAI47_06505	0.48	-0.0
1,353,239	+		IAI47_06505	0.48	+0.5
1,353,264	+		IAI47_06505	0.50	-1.6
1,353,264	+		IAI47_06505	0.50	+2.1
1,353,264	+		IAI47_06505	0.50	+0.0
1,353,264	+		IAI47_06505	0.50	+0.1
1,353,265	-		IAI47_06505	0.50	-1.4
1,353,265	-		IAI47_06505	0.50	-1.3
1,353,344	+		IAI47_06505	0.53	+0.8
1,353,378	+		IAI47_06505	0.55	-0.3
1,353,378	+		IAI47_06505	0.55	+0.1
1,353,378	+		IAI47_06505	0.55	-2.8
1,353,378	+		IAI47_06505	0.55	-1.6
1,353,379	-		IAI47_06505	0.55	+1.1
1,353,379	-		IAI47_06505	0.55	-1.6
1,353,379	-		IAI47_06505	0.55	+0.2
1,353,379	-		IAI47_06505	0.55	-2.3
1,353,379	-		IAI47_06505	0.55	+1.0
1,353,379	-		IAI47_06505	0.55	+0.5
1,353,405	+		IAI47_06505	0.56	-0.2
1,353,405	+		IAI47_06505	0.56	-0.4
1,353,405	+		IAI47_06505	0.56	+0.1
1,353,438	-		IAI47_06505	0.58	+0.5
1,353,453	-		IAI47_06505	0.58	+1.7
1,353,642	+		IAI47_06505	0.67	+0.3
1,353,642	+		IAI47_06505	0.67	-1.3
1,353,642	+		IAI47_06505	0.67	+0.5
1,353,642	+		IAI47_06505	0.67	+0.4
1,353,642	+		IAI47_06505	0.67	+0.1
1,353,643	-		IAI47_06505	0.67	-0.2
1,353,643	-		IAI47_06505	0.67	+1.1
1,353,648	+		IAI47_06505	0.68	-1.7
1,353,648	+		IAI47_06505	0.68	-1.1
1,353,648	+		IAI47_06505	0.68	-0.9
1,353,648	+		IAI47_06505	0.68	-1.2
1,353,648	+		IAI47_06505	0.68	+0.6
1,353,648	+		IAI47_06505	0.68	+2.0
1,353,649	-		IAI47_06505	0.68	-2.3
1,353,649	-		IAI47_06505	0.68	-3.3
1,353,649	-		IAI47_06505	0.68	+1.1
1,353,649	-		IAI47_06505	0.68	-2.8
1,353,649	-		IAI47_06505	0.68	+0.4
1,353,659	+		IAI47_06505	0.68	-0.8
1,353,660	-		IAI47_06505	0.68	-0.7
1,353,728	+		IAI47_06505	0.71	-0.4
1,353,819	-		IAI47_06505	0.76	-1.4
1,353,962	+		IAI47_06505	0.82	+1.6
1,353,962	+		IAI47_06505	0.82	-1.2
1,353,962	+		IAI47_06505	0.82	-2.4
1,353,963	-		IAI47_06505	0.82	-0.9
1,353,963	-		IAI47_06505	0.82	+0.5
1,354,013	+		IAI47_06505	0.85	+1.7
1,354,013	+		IAI47_06505	0.85	-1.1
1,354,013	+				+1.7
1,354,013	+		IAI47_06505	0.85	-0.1
1,354,013	+		IAI47_06505	0.85	+0.0
1,354,013	+		IAI47_06505	0.85	+0.4
1,354,014	-		IAI47_06505	0.85	+1.1
1,354,014	-		IAI47_06505	0.85	-1.1
1,354,014	-		IAI47_06505	0.85	-0.9
1,354,014	-		IAI47_06505	0.85	+0.3
1,354,014	-		IAI47_06505	0.85	-0.9
1,354,016	+		IAI47_06505	0.85	-2.2
1,354,016	+		IAI47_06505	0.85	-1.4
1,354,016	+		IAI47_06505	0.85	-0.3
1,354,017	-		IAI47_06505	0.85	-0.3
1,354,017	-		IAI47_06505	0.85	-1.3
1,354,017	-		IAI47_06505	0.85	-1.6
1,354,238	+				+0.1
1,354,238	+				+0.7
1,354,239	-				-0.1
1,354,239	-				-0.4
1,354,239	-				-0.6
1,354,239	-				-2.6
1,354,239	-				+0.6
1,354,239	-				-2.9
1,354,239	-				+0.6
1,354,239	-				+1.2
1,354,316	+				-0.7
1,354,325	+				+1.8
1,354,325	+				+0.3
1,354,326	-				-3.4
1,354,326	-				-0.3
1,354,360	+				-1.4
1,354,399	+				-0.2
1,354,429	-				+1.0
1,354,549	+		IAI47_06510	0.18	+0.6
1,354,549	+		IAI47_06510	0.18	-0.2
1,354,549	+		IAI47_06510	0.18	-1.3
1,354,549	+		IAI47_06510	0.18	-2.4
1,354,550	-		IAI47_06510	0.18	+0.2
1,354,550	-		IAI47_06510	0.18	-2.2
1,354,550	-		IAI47_06510	0.18	-0.3
1,354,550	-		IAI47_06510	0.18	+0.8
1,354,550	-		IAI47_06510	0.18	+0.1
1,354,642	+		IAI47_06510	0.26	-1.3
1,354,642	+		IAI47_06510	0.26	-1.1
1,354,642	+		IAI47_06510	0.26	-1.3
1,354,642	+		IAI47_06510	0.26	-1.1
1,354,643	-		IAI47_06510	0.26	-1.4
1,354,745	-		IAI47_06510	0.35	-0.6
1,354,763	+		IAI47_06510	0.36	-1.6
1,354,781	-		IAI47_06510	0.38	+1.3
1,354,920	+		IAI47_06510	0.50	+0.2
1,354,920	+		IAI47_06510	0.50	-0.9
1,354,920	+		IAI47_06510	0.50	-1.2
1,354,921	-		IAI47_06510	0.50	-0.8
1,354,921	-		IAI47_06510	0.50	-0.8
1,354,952	+		IAI47_06510	0.52	+0.4
1,354,952	+		IAI47_06510	0.52	+0.5
1,354,952	+		IAI47_06510	0.52	-1.3
1,354,952	+		IAI47_06510	0.52	-2.0
1,354,953	-		IAI47_06510	0.52	-1.3
1,354,953	-		IAI47_06510	0.52	-3.1
1,354,953	-		IAI47_06510	0.52	-2.4
1,354,953	-		IAI47_06510	0.52	-2.1
1,354,953	-		IAI47_06510	0.52	-1.1
1,355,058	-		IAI47_06510	0.61	-0.1
1,355,058	-		IAI47_06510	0.61	-0.3
1,355,087	-		IAI47_06510	0.64	-2.4
1,355,087	-		IAI47_06510	0.64	-0.3
1,355,112	+		IAI47_06510	0.66	+1.7
1,355,112	+		IAI47_06510	0.66	-2.0
1,355,112	+		IAI47_06510	0.66	+1.2
1,355,129	-		IAI47_06510	0.67	-0.5
1,355,254	+		IAI47_06510	0.78	+1.1
1,355,254	+		IAI47_06510	0.78	-0.5
1,355,254	+		IAI47_06510	0.78	-0.8
1,355,254	+		IAI47_06510	0.78	+0.8
1,355,255	-		IAI47_06510	0.78	-1.4
1,355,255	-		IAI47_06510	0.78	-0.6
1,355,258	+		IAI47_06510	0.78	-2.4
1,355,259	-		IAI47_06510	0.79	-1.1
1,355,259	-		IAI47_06510	0.79	-1.7
1,355,259	-		IAI47_06510	0.79	+0.9
1,355,330	+		IAI47_06510	0.85	+1.6
1,355,330	+		IAI47_06510	0.85	-0.4
1,355,331	-		IAI47_06510	0.85	+0.4
1,355,331	-		IAI47_06510	0.85	+1.7
1,355,331	-		IAI47_06510	0.85	+0.3
1,355,331	-		IAI47_06510	0.85	-0.7
1,355,333	+		IAI47_06510	0.85	-0.8
1,355,333	+		IAI47_06510	0.85	+1.9
1,355,333	+		IAI47_06510	0.85	-1.6
1,355,333	+		IAI47_06510	0.85	-0.9
1,355,333	+		IAI47_06510	0.85	-0.3
1,355,333	+		IAI47_06510	0.85	-1.6
1,355,334	-		IAI47_06510	0.85	-1.1
1,355,334	-		IAI47_06510	0.85	+1.7
1,355,334	-		IAI47_06510	0.85	+0.4
1,355,334	-		IAI47_06510	0.85	-3.1
1,355,334	-		IAI47_06510	0.85	-2.0
1,355,336	+		IAI47_06510	0.85	+1.3