Strain Fitness in Pantoea sp. MT58 around IAI47_04980

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,045,792	+		IAI47_04970	0.83	-0.0
1,045,792	+		IAI47_04970	0.83	-0.7
1,045,792	+		IAI47_04970	0.83	+1.8
1,045,792	+		IAI47_04970	0.83	-0.3
1,045,792	+		IAI47_04970	0.83	-0.0
1,045,792	+		IAI47_04970	0.83	+0.1
1,045,793	-		IAI47_04970	0.84	-2.8
1,045,793	-		IAI47_04970	0.84	+1.8
1,045,793	-		IAI47_04970	0.84	-1.4
1,045,828	+		IAI47_04970	0.86	-1.2
1,045,828	+		IAI47_04970	0.86	+1.7
1,045,828	+		IAI47_04970	0.86	-2.2
1,045,828	+		IAI47_04970	0.86	-2.7
1,045,828	+		IAI47_04970	0.86	+2.2
1,045,828	+		IAI47_04970	0.86	+1.0
1,045,828	+		IAI47_04970	0.86	-0.9
1,045,829	-		IAI47_04970	0.86	+2.8
1,045,829	-		IAI47_04970	0.86	+1.0
1,045,908	+				-0.1
1,045,908	+				+0.9
1,045,909	-				+0.5
1,045,909	-				+0.6
1,045,909	-				+2.9
1,045,939	+				+0.3
1,045,939	+				+0.7
1,045,939	+				-1.4
1,046,032	+				+0.4
1,046,032	+				+0.5
1,046,032	+				+3.4
1,046,032	+				+0.3
1,046,033	-				-0.1
1,046,033	-				+0.6
1,046,033	-				-1.0
1,046,033	-				+0.9
1,046,038	+				+0.3
1,046,038	+				-0.5
1,046,038	+				-0.2
1,046,038	+				+1.3
1,046,038	+				-0.6
1,046,038	+				-0.2
1,046,039	-				+1.4
1,046,039	-				+0.6
1,046,076	+				+1.0
1,046,076	+				-0.1
1,046,077	-				+1.5
1,046,077	-				-1.4
1,046,091	+				+1.1
1,046,092	-				+0.3
1,046,114	+				+1.1
1,046,114	+				-1.2
1,046,115	-				-0.0
1,046,118	+				-2.2
1,046,118	+				-1.8
1,046,118	+				+0.3
1,046,118	+				-1.0
1,046,118	+				+1.1
1,046,119	-				-0.0
1,046,148	+				+2.0
1,046,149	-				+0.8
1,046,149	-				+1.3
1,046,150	+				-2.7
1,046,151	-				+2.5
1,046,156	+				+0.7
1,046,182	+				-0.3
1,046,183	-				+0.1
1,046,188	+				-0.3
1,046,188	+				+1.2
1,046,188	+				+1.8
1,046,188	+				+1.5
1,046,189	-				+0.1
1,046,189	-				+1.1
1,046,189	-				+1.4
1,046,191	+				+0.8
1,046,191	+				+3.0
1,046,191	+				-2.1
1,046,191	+				-0.5
1,046,191	+				-1.2
1,046,191	+				-2.9
1,046,191	+				+0.1
1,046,191	+				-1.0
1,046,191	+				+0.0
1,046,191	+				+1.9
1,046,191	+				-2.1
1,046,192	-				+1.6
1,046,192	-				-0.3
1,046,192	-				-3.1
1,046,192	-				-1.7
1,046,192	-				-0.0
1,046,192	-				-2.2
1,046,228	-		IAI47_04975	0.11	-0.5
1,046,231	+		IAI47_04975	0.12	-0.3
1,046,257	-		IAI47_04975	0.16	-1.0
1,046,303	+		IAI47_04975	0.23	+2.0
1,046,303	+		IAI47_04975	0.23	-1.7
1,046,303	+		IAI47_04975	0.23	+3.7
1,046,304	-		IAI47_04975	0.23	+2.8
1,046,304	-		IAI47_04975	0.23	-2.3
1,046,304	-		IAI47_04975	0.23	-1.5
1,046,304	-		IAI47_04975	0.23	-2.5
1,046,322	+		IAI47_04975	0.26	-2.4
1,046,322	+		IAI47_04975	0.26	-2.5
1,046,322	+		IAI47_04975	0.26	-0.6
1,046,322	+		IAI47_04975	0.26	+1.5
1,046,322	+		IAI47_04975	0.26	+1.8
1,046,323	-		IAI47_04975	0.26	+0.0
1,046,323	-		IAI47_04975	0.26	-1.7
1,046,323	-		IAI47_04975	0.26	+1.7
1,046,353	+		IAI47_04975	0.31	+0.3
1,046,353	+		IAI47_04975	0.31	+1.2
1,046,353	+		IAI47_04975	0.31	-0.4
1,046,353	+		IAI47_04975	0.31	+0.8
1,046,353	+		IAI47_04975	0.31	-0.1
1,046,353	+		IAI47_04975	0.31	-0.0
1,046,353	+		IAI47_04975	0.31	-2.1
1,046,354	-		IAI47_04975	0.31	-1.2
1,046,354	-		IAI47_04975	0.31	+1.4
1,046,354	-		IAI47_04975	0.31	+1.7
1,046,354	-		IAI47_04975	0.31	+1.6
1,046,354	-		IAI47_04975	0.31	+1.8
1,046,354	-		IAI47_04975	0.31	-1.8
1,046,354	-		IAI47_04975	0.31	+0.2
1,046,354	-		IAI47_04975	0.31	+0.2
1,046,354	-		IAI47_04975	0.31	+0.1
1,046,406	+		IAI47_04975	0.40	-2.1
1,046,406	+		IAI47_04975	0.40	-1.6
1,046,406	+		IAI47_04975	0.40	+1.3
1,046,406	+		IAI47_04975	0.40	+0.7
1,046,406	+		IAI47_04975	0.40	+1.4
1,046,406	+		IAI47_04975	0.40	+1.8
1,046,407	-		IAI47_04975	0.40	-2.0
1,046,407	-		IAI47_04975	0.40	+1.1
1,046,407	-		IAI47_04975	0.40	-2.4
1,046,407	-		IAI47_04975	0.40	+0.2
1,046,407	-		IAI47_04975	0.40	-1.3
1,046,407	-		IAI47_04975	0.40	+1.4
1,046,407	-		IAI47_04975	0.40	-1.8
1,046,463	+		IAI47_04975	0.49	-2.7
1,046,466	+		IAI47_04975	0.49	-0.2
1,046,467	-		IAI47_04975	0.49	+0.4
1,046,467	-		IAI47_04975	0.49	-0.0
1,046,467	-		IAI47_04975	0.49	+0.5
1,046,467	-		IAI47_04975	0.49	-3.7
1,046,467	-		IAI47_04975	0.49	+0.8
1,046,467	-		IAI47_04975	0.49	-0.6
1,046,467	-		IAI47_04975	0.49	+0.3
1,046,468	+		IAI47_04975	0.50	+0.1
1,046,468	+		IAI47_04975	0.50	+1.1
1,046,469	-		IAI47_04975	0.50	-0.1
1,046,469	-		IAI47_04975	0.50	+0.8
1,046,469	-		IAI47_04975	0.50	+1.3
1,046,508	-		IAI47_04975	0.56	+0.3
1,046,508	-		IAI47_04975	0.56	+2.0
1,046,577	+		IAI47_04975	0.67	-0.0
1,046,577	+		IAI47_04975	0.67	-1.9
1,046,577	+		IAI47_04975	0.67	+2.5
1,046,578	-		IAI47_04975	0.67	-0.5
1,046,589	-		IAI47_04975	0.69	-0.8
1,046,660	+		IAI47_04975	0.80	+1.1
1,046,691	+		IAI47_04975	0.85	+0.5
1,046,691	+		IAI47_04975	0.85	+1.6
1,046,691	+		IAI47_04975	0.85	-1.7
1,046,691	+		IAI47_04975	0.85	+0.8
1,046,691	+		IAI47_04975	0.85	+1.7
1,046,692	-		IAI47_04975	0.85	-2.7
1,046,692	-		IAI47_04975	0.85	-0.8
1,046,692	-		IAI47_04975	0.85	+0.4
1,046,692	-		IAI47_04975	0.85	+0.2
1,046,692	-		IAI47_04975	0.85	-0.4
1,046,692	-		IAI47_04975	0.85	-2.0
1,046,740	+				-0.7
1,046,741	-				-0.3
1,046,741	-				+1.8
1,046,768	-				+0.7
1,046,768	-				+1.7
1,046,781	+				-0.6
1,046,781	+				-1.0
1,046,781	+				+0.9
1,046,782	-				+1.4
1,046,782	-				-1.0
1,046,830	-				-0.5
1,046,830	-				-0.5
1,046,830	-				+0.0
1,046,870	+				+0.9
1,046,871	-				+0.8
1,046,898	+		IAI47_04980	0.13	-0.5
1,046,898	+		IAI47_04980	0.13	+0.8
1,046,898	+		IAI47_04980	0.13	-0.8
1,046,898	+		IAI47_04980	0.13	+0.8
1,046,899	-		IAI47_04980	0.13	+1.6
1,046,899	-		IAI47_04980	0.13	+1.8
1,046,899	-		IAI47_04980	0.13	-1.0
1,046,899	-		IAI47_04980	0.13	+1.8
1,046,899	-		IAI47_04980	0.13	+1.2
1,046,941	-		IAI47_04980	0.17	+2.0
1,046,941	-		IAI47_04980	0.17	-0.7
1,046,976	+		IAI47_04980	0.21	-0.4
1,046,976	+		IAI47_04980	0.21	-0.5
1,046,989	-		IAI47_04980	0.22	-1.5
1,046,989	-		IAI47_04980	0.22	-1.1
1,046,989	-		IAI47_04980	0.22	-0.6
1,046,989	-		IAI47_04980	0.22	-0.7
1,047,002	+		IAI47_04980	0.23	+0.9
1,047,002	+		IAI47_04980	0.23	-0.4
1,047,002	+		IAI47_04980	0.23	-0.8
1,047,002	+		IAI47_04980	0.23	-1.4
1,047,003	-		IAI47_04980	0.23	-0.2
1,047,003	-		IAI47_04980	0.23	+0.2
1,047,091	+		IAI47_04980	0.33	+1.4
1,047,092	-		IAI47_04980	0.33	+2.3
1,047,092	-		IAI47_04980	0.33	+0.5
1,047,224	+		IAI47_04980	0.46	-0.2
1,047,224	+		IAI47_04980	0.46	+2.0
1,047,224	+		IAI47_04980	0.46	-2.4
1,047,224	+		IAI47_04980	0.46	-1.0
1,047,225	-		IAI47_04980	0.46	-1.2
1,047,225	-		IAI47_04980	0.46	-2.2
1,047,225	-		IAI47_04980	0.46	+1.8
1,047,225	-		IAI47_04980	0.46	+0.6
1,047,225	-		IAI47_04980	0.46	-0.4
1,047,312	+		IAI47_04980	0.55	-1.4
1,047,313	-		IAI47_04980	0.55	+0.4
1,047,447	+		IAI47_04980	0.69	+0.6
1,047,447	+		IAI47_04980	0.69	-2.5
1,047,447	+		IAI47_04980	0.69	-1.7
1,047,447	+		IAI47_04980	0.69	+1.7
1,047,447	+		IAI47_04980	0.69	+0.5
1,047,447	+		IAI47_04980	0.69	-0.5
1,047,447	+		IAI47_04980	0.69	+1.5
1,047,447	+		IAI47_04980	0.69	+1.6
1,047,447	+		IAI47_04980	0.69	+1.6
1,047,447	+		IAI47_04980	0.69	+2.3
1,047,447	+		IAI47_04980	0.69	+1.3
1,047,448	-		IAI47_04980	0.69	+0.5
1,047,448	-		IAI47_04980	0.69	+1.0
1,047,448	-		IAI47_04980	0.69	+0.7
1,047,448	-		IAI47_04980	0.69	-2.5
1,047,448	-		IAI47_04980	0.69	-1.4
1,047,448	-		IAI47_04980	0.69	+1.3
1,047,448	-		IAI47_04980	0.69	+1.4
1,047,448	-		IAI47_04980	0.69	+0.4
1,047,448	-		IAI47_04980	0.69	+0.6
1,047,448	-		IAI47_04980	0.69	-2.2
1,047,448	-		IAI47_04980	0.69	-1.4
1,047,448	-		IAI47_04980	0.69	+0.6
1,047,448	-		IAI47_04980	0.69	-2.5
1,047,469	+		IAI47_04980	0.71	-1.3
1,047,469	+		IAI47_04980	0.71	+0.5
1,047,470	-		IAI47_04980	0.71	-0.3
1,047,470	-		IAI47_04980	0.71	-0.1
1,047,470	-		IAI47_04980	0.71	-1.7
1,047,470	-		IAI47_04980	0.71	-0.5
1,047,597	+		IAI47_04980	0.84	-0.4
1,047,675	+				+0.7
1,047,675	+				-1.9
1,047,676	-				+0.8
1,047,676	-				+1.8
1,047,676	-				-2.2
1,047,676	-				-2.0
1,047,676	-				+0.7
1,047,676	-				-2.5
1,047,678	+				-2.2
1,047,678	+				-3.1
1,047,678	+				-0.6
1,047,679	-				+0.3
1,047,685	-				-0.2
1,047,691	+				+0.9
1,047,692	-				-0.5
1,047,699	+				-2.9
1,047,700	-				+1.5
1,047,700	-				-1.5
1,047,700	-				+1.0
1,047,782	+				+0.2
1,047,788	+				-1.3
1,047,789	-				-0.6
1,047,797	-				+0.8
1,047,797	-				-0.1
1,047,800	+				+1.5
1,047,800	+				+4.0
1,047,800	+				-3.1
1,047,800	+				+0.2
1,047,856	+				-0.1
1,047,868	-				+1.5
1,047,878	+				-0.3
1,047,947	+				+1.2
1,047,947	+				-0.5
1,047,947	+				-2.4
1,047,947	+				-1.7
1,047,947	+				+1.2
1,047,948	-				-1.9
1,047,948	-				-2.9
1,047,948	-				-0.7
1,047,968	-				-1.5
1,047,968	-				-0.2
1,047,970	+				-0.8
1,047,970	+				-0.5
1,047,970	+				-0.9
1,047,970	+				-0.1
1,047,971	-				-0.5
1,047,971	-				-1.8
1,047,981	-				-0.3
1,048,014	+				-0.9
1,048,015	-				+1.2
1,048,015	-				-0.4
1,048,028	-				-1.5
1,048,057	+		IAI47_04985	0.10	-0.0
1,048,057	+		IAI47_04985	0.10	+0.1
1,048,058	-		IAI47_04985	0.10	-0.4
1,048,058	-		IAI47_04985	0.10	+1.2
1,048,058	-		IAI47_04985	0.10	+0.6
1,048,068	+		IAI47_04985	0.11	-1.8
1,048,078	+		IAI47_04985	0.12	-1.7
1,048,078	+		IAI47_04985	0.12	+1.5
1,048,078	+		IAI47_04985	0.12	+0.4
1,048,078	+		IAI47_04985	0.12	-1.4
1,048,079	-		IAI47_04985	0.12	+2.1
1,048,162	+		IAI47_04985	0.21	+1.4
1,048,163	-		IAI47_04985	0.21	-2.3
1,048,163	-		IAI47_04985	0.21	-2.0
1,048,220	+		IAI47_04985	0.26	+1.5
1,048,220	+		IAI47_04985	0.26	+0.2
1,048,220	+		IAI47_04985	0.26	-2.3
1,048,220	+		IAI47_04985	0.26	-0.5
1,048,220	+		IAI47_04985	0.26	+0.2
1,048,220	+		IAI47_04985	0.26	+0.1
1,048,220	+		IAI47_04985	0.26	-1.5
1,048,220	+		IAI47_04985	0.26	-0.8
1,048,220	+		IAI47_04985	0.26	+0.5
1,048,220	+		IAI47_04985	0.26	+0.8
1,048,221	-		IAI47_04985	0.26	+0.7
1,048,221	-		IAI47_04985	0.26	-0.6
1,048,221	-		IAI47_04985	0.26	+3.2
1,048,221	-		IAI47_04985	0.26	-1.6
1,048,221	-		IAI47_04985	0.26	+1.5
1,048,221	-		IAI47_04985	0.26	-1.5
1,048,221	-		IAI47_04985	0.26	+2.2
1,048,266	+		IAI47_04985	0.31	-0.2
1,048,266	+		IAI47_04985	0.31	+0.9
1,048,267	-		IAI47_04985	0.31	+1.1
1,048,267	-		IAI47_04985	0.31	+0.5
1,048,301	+		IAI47_04985	0.34	+0.8
1,048,301	+		IAI47_04985	0.34	-0.3
1,048,302	-		IAI47_04985	0.34	+0.3
1,048,302	-		IAI47_04985	0.34	+0.7
1,048,309	+		IAI47_04985	0.35	+1.0
1,048,329	+		IAI47_04985	0.37	+1.2
1,048,329	+		IAI47_04985	0.37	-0.5
1,048,329	+		IAI47_04985	0.37	+1.8
1,048,329	+		IAI47_04985	0.37	+1.6
1,048,330	-		IAI47_04985	0.37	+0.3
1,048,330	-		IAI47_04985	0.37	-1.1
1,048,332	+		IAI47_04985	0.37	+1.7
1,048,348	+		IAI47_04985	0.39	-1.7
1,048,348	+		IAI47_04985	0.39	+0.4
1,048,348	+		IAI47_04985	0.39	-1.7
1,048,348	+		IAI47_04985	0.39	-1.4
1,048,348	+		IAI47_04985	0.39	+1.3
1,048,348	+		IAI47_04985	0.39	+1.1
1,048,349	-		IAI47_04985	0.39	+0.8
1,048,349	-		IAI47_04985	0.39	-1.0
1,048,384	+		IAI47_04985	0.43	+1.1
1,048,385	-		IAI47_04985	0.43	-1.1
1,048,441	+		IAI47_04985	0.48	+0.6
1,048,441	+		IAI47_04985	0.48	+0.3
1,048,442	-		IAI47_04985	0.48	+3.9
1,048,444	+		IAI47_04985	0.48	-0.8
1,048,445	-		IAI47_04985	0.49	-1.7
1,048,445	-		IAI47_04985	0.49	+1.6
1,048,447	+		IAI47_04985	0.49	-1.2
1,048,447	+		IAI47_04985	0.49	-0.8
1,048,448	-		IAI47_04985	0.49	-0.8
1,048,456	+		IAI47_04985	0.50	+1.3
1,048,457	-		IAI47_04985	0.50	-0.5
1,048,485	+		IAI47_04985	0.52	+1.5
1,048,485	+		IAI47_04985	0.52	+3.8
1,048,485	+		IAI47_04985	0.52	+1.3
1,048,486	-		IAI47_04985	0.53	-1.4
1,048,509	+		IAI47_04985	0.55	+0.3
1,048,509	+		IAI47_04985	0.55	-0.5
1,048,509	+		IAI47_04985	0.55	-0.2
1,048,510	-		IAI47_04985	0.55	+0.5
1,048,540	+		IAI47_04985	0.58	-0.9
1,048,570	+		IAI47_04985	0.61	-2.0
1,048,571	-		IAI47_04985	0.61	-0.8
1,048,571	-		IAI47_04985	0.61	+2.0
1,048,603	+		IAI47_04985	0.64	-2.4
1,048,604	-		IAI47_04985	0.64	+0.1
1,048,604	-		IAI47_04985	0.64	-1.5
1,048,615	+		IAI47_04985	0.65	-1.9
1,048,615	+		IAI47_04985	0.65	-1.4
1,048,623	+		IAI47_04985	0.66	-1.9
1,048,624	-		IAI47_04985	0.66	+1.9
1,048,651	+		IAI47_04985	0.69	+0.3
1,048,652	-		IAI47_04985	0.69	+2.0
1,048,652	-		IAI47_04985	0.69	+2.3
1,048,688	-		IAI47_04985	0.72	-1.2
1,048,709	-		IAI47_04985	0.75	+1.6
1,048,741	+		IAI47_04985	0.78	+1.4