Strain Fitness in Pantoea sp. MT58 around IAI47_04970

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,043,893	+		IAI47_04965	0.25	-3.1
1,043,894	-		IAI47_04965	0.25	+0.5
1,043,894	-		IAI47_04965	0.25	+0.2
1,043,911	+		IAI47_04965	0.27	-0.8
1,043,912	-		IAI47_04965	0.27	-2.2
1,043,987	+		IAI47_04965	0.33	-0.1
1,043,987	+		IAI47_04965	0.33	-2.4
1,043,988	-		IAI47_04965	0.34	+0.7
1,044,109	+		IAI47_04965	0.44	-0.5
1,044,110	-		IAI47_04965	0.44	+0.3
1,044,110	-		IAI47_04965	0.44	+0.2
1,044,272	+		IAI47_04965	0.58	+1.1
1,044,272	+		IAI47_04965	0.58	-0.9
1,044,272	+		IAI47_04965	0.58	+2.1
1,044,273	-		IAI47_04965	0.58	-0.8
1,044,273	-		IAI47_04965	0.58	-0.0
1,044,275	+		IAI47_04965	0.58	+0.2
1,044,275	+		IAI47_04965	0.58	+0.8
1,044,276	-		IAI47_04965	0.59	+0.1
1,044,276	-		IAI47_04965	0.59	+1.3
1,044,276	-		IAI47_04965	0.59	-0.4
1,044,276	-		IAI47_04965	0.59	+0.4
1,044,289	+		IAI47_04965	0.60	-1.0
1,044,289	+		IAI47_04965	0.60	-0.2
1,044,289	+		IAI47_04965	0.60	-0.0
1,044,290	-		IAI47_04965	0.60	-2.9
1,044,312	-		IAI47_04965	0.62	+1.7
1,044,332	+		IAI47_04965	0.63	-2.3
1,044,332	+		IAI47_04965	0.63	-0.5
1,044,333	-		IAI47_04965	0.64	-1.4
1,044,333	-		IAI47_04965	0.64	-1.8
1,044,333	-		IAI47_04965	0.64	-0.8
1,044,333	-		IAI47_04965	0.64	-2.4
1,044,333	-		IAI47_04965	0.64	-1.5
1,044,634	-		IAI47_04965	0.90	+0.8
1,044,745	+				-1.5
1,044,746	-				+1.5
1,044,746	-				+1.4
1,044,746	-				+0.3
1,044,746	-				-2.4
1,044,750	-				+1.1
1,044,756	+				-3.8
1,044,757	-				+0.4
1,044,772	+				-0.6
1,044,773	-				-0.2
1,044,773	-				-1.5
1,044,812	+				-0.3
1,044,812	+				-1.7
1,044,813	-				-1.5
1,044,813	-				+0.5
1,044,813	-				-1.7
1,044,813	-				+1.8
1,044,899	+		IAI47_04970	0.13	+3.3
1,044,899	+		IAI47_04970	0.13	-1.4
1,044,899	+		IAI47_04970	0.13	+2.5
1,044,899	+		IAI47_04970	0.13	+0.1
1,044,899	+		IAI47_04970	0.13	+0.1
1,044,899	+		IAI47_04970	0.13	-0.2
1,044,900	-		IAI47_04970	0.13	-2.7
1,044,900	-		IAI47_04970	0.13	-0.0
1,044,900	-		IAI47_04970	0.13	+1.9
1,044,900	-		IAI47_04970	0.13	+0.9
1,044,903	+		IAI47_04970	0.13	-0.1
1,044,903	+		IAI47_04970	0.13	+1.1
1,044,903	+		IAI47_04970	0.13	+0.2
1,044,903	+		IAI47_04970	0.13	+0.9
1,044,903	+		IAI47_04970	0.13	-2.0
1,044,903	+		IAI47_04970	0.13	-1.0
1,044,903	+		IAI47_04970	0.13	-0.8
1,044,903	+		IAI47_04970	0.13	-0.7
1,044,903	+		IAI47_04970	0.13	-1.5
1,044,903	+		IAI47_04970	0.13	-2.2
1,044,904	-		IAI47_04970	0.13	-1.4
1,044,904	-		IAI47_04970	0.13	-0.9
1,044,904	-		IAI47_04970	0.13	-0.2
1,044,904	-		IAI47_04970	0.13	-1.2
1,044,904	-		IAI47_04970	0.13	-0.0
1,044,904	-		IAI47_04970	0.13	+0.7
1,044,904	-		IAI47_04970	0.13	+1.1
1,044,904	-		IAI47_04970	0.13	-2.1
1,044,904	-		IAI47_04970	0.13	-1.8
1,044,904	-		IAI47_04970	0.13	+2.7
1,044,904	-		IAI47_04970	0.13	-0.5
1,044,906	+		IAI47_04970	0.14	-0.6
1,044,906	+		IAI47_04970	0.14	+0.7
1,044,906	+		IAI47_04970	0.14	+0.8
1,044,906	+		IAI47_04970	0.14	-0.5
1,044,907	-		IAI47_04970	0.14	+3.4
1,044,907	-		IAI47_04970	0.14	-0.1
1,044,907	-		IAI47_04970	0.14	+0.0
1,044,907	-		IAI47_04970	0.14	-3.1
1,044,907	-		IAI47_04970	0.14	-0.8
1,044,907	-		IAI47_04970	0.14	+0.1
1,044,907	-		IAI47_04970	0.14	+0.8
1,044,907	-		IAI47_04970	0.14	-0.2
1,044,909	+		IAI47_04970	0.14	-0.3
1,044,910	-		IAI47_04970	0.14	-1.7
1,044,910	-		IAI47_04970	0.14	-0.4
1,044,910	-		IAI47_04970	0.14	+1.0
1,044,946	+		IAI47_04970	0.17	+0.7
1,044,946	+		IAI47_04970	0.17	-1.3
1,044,946	+		IAI47_04970	0.17	+0.5
1,044,946	+		IAI47_04970	0.17	+0.7
1,044,947	-		IAI47_04970	0.17	-0.1
1,044,947	-		IAI47_04970	0.17	+2.1
1,044,947	-		IAI47_04970	0.17	+0.9
1,044,947	-		IAI47_04970	0.17	-1.2
1,044,947	-		IAI47_04970	0.17	-0.2
1,044,947	-		IAI47_04970	0.17	+1.4
1,045,038	+		IAI47_04970	0.24	+1.6
1,045,039	-		IAI47_04970	0.24	-1.2
1,045,039	-		IAI47_04970	0.24	-1.7
1,045,045	-		IAI47_04970	0.25	+2.8
1,045,045	-		IAI47_04970	0.25	-2.9
1,045,048	+		IAI47_04970	0.25	+2.8
1,045,048	+		IAI47_04970	0.25	-1.2
1,045,048	+		IAI47_04970	0.25	-0.5
1,045,048	+		IAI47_04970	0.25	-1.7
1,045,069	-		IAI47_04970	0.26	-1.2
1,045,082	+		IAI47_04970	0.28	-2.5
1,045,082	+		IAI47_04970	0.28	-0.0
1,045,137	-		IAI47_04970	0.32	-2.2
1,045,164	+		IAI47_04970	0.34	+1.1
1,045,164	+		IAI47_04970	0.34	+0.4
1,045,164	+		IAI47_04970	0.34	-0.2
1,045,165	-		IAI47_04970	0.34	-1.0
1,045,165	-		IAI47_04970	0.34	-0.2
1,045,165	-		IAI47_04970	0.34	+0.7
1,045,165	-		IAI47_04970	0.34	+1.4
1,045,165	-		IAI47_04970	0.34	+1.5
1,045,257	+		IAI47_04970	0.41	-0.3
1,045,258	-		IAI47_04970	0.41	+1.8
1,045,353	+		IAI47_04970	0.49	-1.5
1,045,353	+		IAI47_04970	0.49	+2.3
1,045,353	+		IAI47_04970	0.49	-0.8
1,045,353	+		IAI47_04970	0.49	-1.5
1,045,353	+				+1.8
1,045,353	+		IAI47_04970	0.49	-0.3
1,045,353	+		IAI47_04970	0.49	-1.9
1,045,353	+		IAI47_04970	0.49	+0.7
1,045,353	+		IAI47_04970	0.49	-0.5
1,045,353	+		IAI47_04970	0.49	+0.3
1,045,353	+		IAI47_04970	0.49	-0.9
1,045,354	-		IAI47_04970	0.49	-1.2
1,045,354	-		IAI47_04970	0.49	-0.2
1,045,354	-		IAI47_04970	0.49	+0.2
1,045,354	-		IAI47_04970	0.49	-1.5
1,045,354	-		IAI47_04970	0.49	+0.4
1,045,354	-		IAI47_04970	0.49	+0.1
1,045,354	-		IAI47_04970	0.49	+0.6
1,045,354	-		IAI47_04970	0.49	+0.9
1,045,354	-		IAI47_04970	0.49	+0.0
1,045,357	+		IAI47_04970	0.49	+0.8
1,045,357	+		IAI47_04970	0.49	-0.6
1,045,357	+		IAI47_04970	0.49	+0.2
1,045,357	+		IAI47_04970	0.49	-0.3
1,045,357	+		IAI47_04970	0.49	+1.8
1,045,357	+		IAI47_04970	0.49	+1.6
1,045,357	+		IAI47_04970	0.49	-1.8
1,045,357	+		IAI47_04970	0.49	+1.7
1,045,358	-		IAI47_04970	0.49	+2.7
1,045,358	-		IAI47_04970	0.49	-0.5
1,045,358	-		IAI47_04970	0.49	+1.6
1,045,358	-		IAI47_04970	0.49	-0.5
1,045,358	-		IAI47_04970	0.49	+1.4
1,045,358	-		IAI47_04970	0.49	+1.3
1,045,358	-		IAI47_04970	0.49	-2.7
1,045,358	-		IAI47_04970	0.49	-1.8
1,045,358	-		IAI47_04970	0.49	+0.0
1,045,410	+		IAI47_04970	0.53	+0.2
1,045,410	+		IAI47_04970	0.53	+0.2
1,045,410	+		IAI47_04970	0.53	+2.1
1,045,411	-		IAI47_04970	0.53	-1.3
1,045,411	-		IAI47_04970	0.53	+0.2
1,045,411	-		IAI47_04970	0.53	+1.5
1,045,431	+		IAI47_04970	0.55	+0.3
1,045,433	+		IAI47_04970	0.55	-0.8
1,045,433	+		IAI47_04970	0.55	-1.8
1,045,433	+		IAI47_04970	0.55	-2.2
1,045,434	-		IAI47_04970	0.55	-0.7
1,045,434	-		IAI47_04970	0.55	+0.2
1,045,529	+		IAI47_04970	0.63	+1.7
1,045,529	+		IAI47_04970	0.63	-1.4
1,045,529	+		IAI47_04970	0.63	-0.5
1,045,529	+		IAI47_04970	0.63	-0.0
1,045,529	+		IAI47_04970	0.63	+0.2
1,045,530	-		IAI47_04970	0.63	+0.4
1,045,530	-		IAI47_04970	0.63	+0.0
1,045,530	-		IAI47_04970	0.63	-1.4
1,045,530	-		IAI47_04970	0.63	-0.2
1,045,530	-		IAI47_04970	0.63	+0.8
1,045,530	-		IAI47_04970	0.63	+2.5
1,045,530	-		IAI47_04970	0.63	-1.7
1,045,530	-		IAI47_04970	0.63	-0.2
1,045,530	-		IAI47_04970	0.63	+0.6
1,045,530	-		IAI47_04970	0.63	-0.9
1,045,530	-		IAI47_04970	0.63	-0.4
1,045,530	-		IAI47_04970	0.63	+0.1
1,045,540	+		IAI47_04970	0.64	+0.2
1,045,540	+		IAI47_04970	0.64	-1.5
1,045,540	+		IAI47_04970	0.64	-0.2
1,045,540	+		IAI47_04970	0.64	+0.0
1,045,540	+		IAI47_04970	0.64	-0.7
1,045,541	-		IAI47_04970	0.64	+0.1
1,045,541	-		IAI47_04970	0.64	-0.9
1,045,593	+		IAI47_04970	0.68	+1.4
1,045,593	+		IAI47_04970	0.68	-0.5
1,045,593	+		IAI47_04970	0.68	+1.1
1,045,593	+		IAI47_04970	0.68	-2.8
1,045,594	-		IAI47_04970	0.68	-2.7
1,045,594	-		IAI47_04970	0.68	+0.2
1,045,594	-		IAI47_04970	0.68	+0.0
1,045,615	+		IAI47_04970	0.70	+1.3
1,045,615	+		IAI47_04970	0.70	+1.1
1,045,615	+		IAI47_04970	0.70	+0.9
1,045,734	+		IAI47_04970	0.79	-0.0
1,045,734	+		IAI47_04970	0.79	+1.8
1,045,734	+		IAI47_04970	0.79	-1.4
1,045,734	+		IAI47_04970	0.79	+0.9
1,045,735	-		IAI47_04970	0.79	+0.3
1,045,735	-		IAI47_04970	0.79	+0.2
1,045,792	+		IAI47_04970	0.83	-0.0
1,045,792	+		IAI47_04970	0.83	-0.7
1,045,792	+		IAI47_04970	0.83	+1.8
1,045,792	+		IAI47_04970	0.83	-0.3
1,045,792	+		IAI47_04970	0.83	-0.0
1,045,792	+		IAI47_04970	0.83	+0.1
1,045,793	-		IAI47_04970	0.84	-2.8
1,045,793	-		IAI47_04970	0.84	+1.8
1,045,793	-		IAI47_04970	0.84	-1.4
1,045,828	+		IAI47_04970	0.86	-1.2
1,045,828	+		IAI47_04970	0.86	+1.7
1,045,828	+		IAI47_04970	0.86	-2.2
1,045,828	+		IAI47_04970	0.86	-2.7
1,045,828	+		IAI47_04970	0.86	+2.2
1,045,828	+		IAI47_04970	0.86	+1.0
1,045,828	+		IAI47_04970	0.86	-0.9
1,045,829	-		IAI47_04970	0.86	+2.8
1,045,829	-		IAI47_04970	0.86	+1.0
1,045,908	+				-0.1
1,045,908	+				+0.9
1,045,909	-				+0.5
1,045,909	-				+0.6
1,045,909	-				+2.9
1,045,939	+				+0.3
1,045,939	+				+0.7
1,045,939	+				-1.4
1,046,032	+				+0.4
1,046,032	+				+0.5
1,046,032	+				+3.4
1,046,032	+				+0.3
1,046,033	-				-0.1
1,046,033	-				+0.6
1,046,033	-				-1.0
1,046,033	-				+0.9
1,046,038	+				+0.3
1,046,038	+				-0.5
1,046,038	+				-0.2
1,046,038	+				+1.3
1,046,038	+				-0.6
1,046,038	+				-0.2
1,046,039	-				+1.4
1,046,039	-				+0.6
1,046,076	+				+1.0
1,046,076	+				-0.1
1,046,077	-				+1.5
1,046,077	-				-1.4
1,046,091	+				+1.1
1,046,092	-				+0.3
1,046,114	+				+1.1
1,046,114	+				-1.2
1,046,115	-				-0.0
1,046,118	+				-2.2
1,046,118	+				-1.8
1,046,118	+				+0.3
1,046,118	+				-1.0
1,046,118	+				+1.1
1,046,119	-				-0.0
1,046,148	+				+2.0
1,046,149	-				+0.8
1,046,149	-				+1.3
1,046,150	+				-2.7
1,046,151	-				+2.5
1,046,156	+				+0.7
1,046,182	+				-0.3
1,046,183	-				+0.1
1,046,188	+				-0.3
1,046,188	+				+1.2
1,046,188	+				+1.8
1,046,188	+				+1.5
1,046,189	-				+0.1
1,046,189	-				+1.1
1,046,189	-				+1.4
1,046,191	+				+0.8
1,046,191	+				+3.0
1,046,191	+				-2.1
1,046,191	+				-0.5
1,046,191	+				-1.2
1,046,191	+				-2.9
1,046,191	+				+0.1
1,046,191	+				-1.0
1,046,191	+				+0.0
1,046,191	+				+1.9
1,046,191	+				-2.1
1,046,192	-				+1.6
1,046,192	-				-0.3
1,046,192	-				-3.1
1,046,192	-				-1.7
1,046,192	-				-0.0
1,046,192	-				-2.2
1,046,228	-		IAI47_04975	0.11	-0.5
1,046,231	+		IAI47_04975	0.12	-0.3
1,046,257	-		IAI47_04975	0.16	-1.0
1,046,303	+		IAI47_04975	0.23	+2.0
1,046,303	+		IAI47_04975	0.23	-1.7
1,046,303	+		IAI47_04975	0.23	+3.7
1,046,304	-		IAI47_04975	0.23	+2.8
1,046,304	-		IAI47_04975	0.23	-2.3
1,046,304	-		IAI47_04975	0.23	-1.5
1,046,304	-		IAI47_04975	0.23	-2.5
1,046,322	+		IAI47_04975	0.26	-2.4
1,046,322	+		IAI47_04975	0.26	-2.5
1,046,322	+		IAI47_04975	0.26	-0.6
1,046,322	+		IAI47_04975	0.26	+1.5
1,046,322	+		IAI47_04975	0.26	+1.8
1,046,323	-		IAI47_04975	0.26	+0.0
1,046,323	-		IAI47_04975	0.26	-1.7
1,046,323	-		IAI47_04975	0.26	+1.7
1,046,353	+		IAI47_04975	0.31	+0.3
1,046,353	+		IAI47_04975	0.31	+1.2
1,046,353	+		IAI47_04975	0.31	-0.4
1,046,353	+		IAI47_04975	0.31	+0.8
1,046,353	+		IAI47_04975	0.31	-0.1
1,046,353	+		IAI47_04975	0.31	-0.0
1,046,353	+		IAI47_04975	0.31	-2.1
1,046,354	-		IAI47_04975	0.31	-1.2
1,046,354	-		IAI47_04975	0.31	+1.4
1,046,354	-		IAI47_04975	0.31	+1.7
1,046,354	-		IAI47_04975	0.31	+1.6
1,046,354	-		IAI47_04975	0.31	+1.8
1,046,354	-		IAI47_04975	0.31	-1.8
1,046,354	-		IAI47_04975	0.31	+0.2
1,046,354	-		IAI47_04975	0.31	+0.2
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