Experiment: LB_Anaerobic_120MIN_ZN12A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19115 and CSW01_19120 are separated by 151 nucleotides CSW01_19120 and CSW01_19125 overlap by 4 nucleotides CSW01_19125 and CSW01_19130 are separated by 51 nucleotides CSW01_19130 and CSW01_19135 are separated by 115 nucleotides
CSW01_19115: CSW01_19115 - AraC family transcriptional regulator, at 953,320 to 954,153
_19115
CSW01_19120: CSW01_19120 - branched-chain amino acid ABC transporter permease, at 954,305 to 955,024
_19120
CSW01_19125: CSW01_19125 - branched-chain amino acid ABC transporter, at 955,021 to 955,338
_19125
CSW01_19130: CSW01_19130 - FAA hydrolase family protein, at 955,390 to 956,004
_19130
CSW01_19135: CSW01_19135 - MarR family transcriptional regulator, at 956,120 to 956,578
_19135
Position (kb) 955
956 Strain fitness (log2 ratio) -2
-1
0
1
2 at 954.029 kb on + strand, within CSW01_19115 at 954.040 kb on + strand, within CSW01_19115 at 954.051 kb on + strand, within CSW01_19115 at 954.051 kb on + strand, within CSW01_19115 at 954.128 kb on + strand at 954.128 kb on + strand at 954.136 kb on - strand at 954.136 kb on - strand at 954.136 kb on - strand at 954.197 kb on - strand at 954.208 kb on + strand at 954.216 kb on - strand at 954.216 kb on - strand at 954.216 kb on - strand at 954.220 kb on + strand at 954.248 kb on - strand at 954.301 kb on + strand at 954.317 kb on + strand at 954.342 kb on + strand at 954.382 kb on + strand, within CSW01_19120 at 954.398 kb on - strand, within CSW01_19120 at 954.398 kb on - strand, within CSW01_19120 at 954.406 kb on - strand, within CSW01_19120 at 954.481 kb on + strand, within CSW01_19120 at 954.500 kb on - strand, within CSW01_19120 at 954.544 kb on - strand, within CSW01_19120 at 954.602 kb on - strand, within CSW01_19120 at 954.659 kb on - strand, within CSW01_19120 at 954.671 kb on - strand, within CSW01_19120 at 954.671 kb on - strand, within CSW01_19120 at 954.671 kb on - strand, within CSW01_19120 at 954.673 kb on - strand, within CSW01_19120 at 954.729 kb on + strand, within CSW01_19120 at 954.729 kb on + strand, within CSW01_19120 at 954.729 kb on + strand, within CSW01_19120 at 954.734 kb on + strand, within CSW01_19120 at 954.788 kb on + strand, within CSW01_19120 at 954.804 kb on + strand, within CSW01_19120 at 954.822 kb on - strand, within CSW01_19120 at 954.918 kb on - strand, within CSW01_19120 at 954.920 kb on + strand, within CSW01_19120 at 954.920 kb on + strand, within CSW01_19120 at 954.920 kb on + strand, within CSW01_19120 at 954.928 kb on - strand, within CSW01_19120 at 954.928 kb on - strand, within CSW01_19120 at 954.928 kb on - strand, within CSW01_19120 at 954.959 kb on - strand at 955.136 kb on + strand, within CSW01_19125 at 955.247 kb on - strand, within CSW01_19125 at 955.286 kb on - strand, within CSW01_19125 at 955.296 kb on - strand, within CSW01_19125 at 955.312 kb on - strand at 955.319 kb on + strand at 955.322 kb on - strand at 955.322 kb on - strand at 955.333 kb on + strand at 955.361 kb on - strand at 955.361 kb on - strand at 955.365 kb on - strand at 955.415 kb on + strand at 955.425 kb on + strand at 955.428 kb on - strand at 955.433 kb on - strand at 955.480 kb on + strand, within CSW01_19130 at 955.511 kb on - strand, within CSW01_19130 at 955.604 kb on + strand, within CSW01_19130 at 955.604 kb on - strand, within CSW01_19130 at 955.682 kb on - strand, within CSW01_19130 at 955.723 kb on - strand, within CSW01_19130 at 955.723 kb on - strand, within CSW01_19130 at 955.732 kb on + strand, within CSW01_19130 at 955.733 kb on - strand, within CSW01_19130 at 955.735 kb on - strand, within CSW01_19130 at 955.815 kb on - strand, within CSW01_19130 at 955.852 kb on - strand, within CSW01_19130 at 955.868 kb on + strand, within CSW01_19130 at 955.868 kb on + strand, within CSW01_19130 at 955.876 kb on - strand, within CSW01_19130 at 955.917 kb on - strand, within CSW01_19130 at 955.942 kb on - strand, within CSW01_19130 at 956.000 kb on - strand at 956.011 kb on + strand at 956.019 kb on - strand at 956.173 kb on + strand, within CSW01_19135 at 956.181 kb on - strand, within CSW01_19135 at 956.181 kb on - strand, within CSW01_19135 at 956.181 kb on - strand, within CSW01_19135 at 956.220 kb on - strand, within CSW01_19135 at 956.220 kb on - strand, within CSW01_19135 at 956.222 kb on + strand, within CSW01_19135 at 956.222 kb on + strand, within CSW01_19135 at 956.225 kb on - strand, within CSW01_19135 at 956.261 kb on - strand, within CSW01_19135
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12A remove 954,029 + CSW01_19115 0.85 +0.7 954,040 + CSW01_19115 0.86 -0.3 954,051 + CSW01_19115 0.88 +0.8 954,051 + CSW01_19115 0.88 +0.1 954,128 + -1.1 954,128 + +1.3 954,136 - +2.0 954,136 - +1.2 954,136 - -0.1 954,197 - +0.3 954,208 + +0.2 954,216 - +0.4 954,216 - +1.3 954,216 - -0.1 954,220 + -0.3 954,248 - +0.2 954,301 + +0.9 954,317 + -0.3 954,342 + +1.2 954,382 + CSW01_19120 0.11 -0.8 954,398 - CSW01_19120 0.13 -0.4 954,398 - CSW01_19120 0.13 +0.6 954,406 - CSW01_19120 0.14 -0.4 954,481 + CSW01_19120 0.24 -0.4 954,500 - CSW01_19120 0.27 +0.9 954,544 - CSW01_19120 0.33 -0.4 954,602 - CSW01_19120 0.41 +0.1 954,659 - CSW01_19120 0.49 +0.6 954,671 - CSW01_19120 0.51 +0.5 954,671 - CSW01_19120 0.51 +1.5 954,671 - CSW01_19120 0.51 +0.8 954,673 - CSW01_19120 0.51 +1.2 954,729 + CSW01_19120 0.59 -1.0 954,729 + CSW01_19120 0.59 +0.4 954,729 + CSW01_19120 0.59 -0.0 954,734 + CSW01_19120 0.60 +1.3 954,788 + CSW01_19120 0.67 -0.7 954,804 + CSW01_19120 0.69 -0.2 954,822 - CSW01_19120 0.72 -1.1 954,918 - CSW01_19120 0.85 -1.0 954,920 + CSW01_19120 0.85 +0.1 954,920 + CSW01_19120 0.85 -0.4 954,920 + CSW01_19120 0.85 +0.8 954,928 - CSW01_19120 0.87 +1.4 954,928 - CSW01_19120 0.87 +0.8 954,928 - CSW01_19120 0.87 +0.4 954,959 - +1.1 955,136 + CSW01_19125 0.36 +0.5 955,247 - CSW01_19125 0.71 +1.3 955,286 - CSW01_19125 0.83 -0.2 955,296 - CSW01_19125 0.86 +0.5 955,312 - -0.3 955,319 + -0.4 955,322 - -0.0 955,322 - -1.6 955,333 + -0.6 955,361 - -0.3 955,361 - +0.8 955,365 - -2.6 955,415 + -0.0 955,425 + -0.9 955,428 - +0.2 955,433 - +0.2 955,480 + CSW01_19130 0.15 +0.0 955,511 - CSW01_19130 0.20 -0.7 955,604 + CSW01_19130 0.35 +0.2 955,604 - CSW01_19130 0.35 +0.2 955,682 - CSW01_19130 0.47 +0.2 955,723 - CSW01_19130 0.54 +0.0 955,723 - CSW01_19130 0.54 -0.2 955,732 + CSW01_19130 0.56 +0.9 955,733 - CSW01_19130 0.56 -0.6 955,735 - CSW01_19130 0.56 +0.1 955,815 - CSW01_19130 0.69 -1.8 955,852 - CSW01_19130 0.75 -0.0 955,868 + CSW01_19130 0.78 +1.4 955,868 + CSW01_19130 0.78 -0.7 955,876 - CSW01_19130 0.79 +0.3 955,917 - CSW01_19130 0.86 -0.5 955,942 - CSW01_19130 0.90 -1.1 956,000 - +0.4 956,011 + +0.6 956,019 - -0.3 956,173 + CSW01_19135 0.12 -0.8 956,181 - CSW01_19135 0.13 -0.5 956,181 - CSW01_19135 0.13 +0.0 956,181 - CSW01_19135 0.13 -0.3 956,220 - CSW01_19135 0.22 +0.0 956,220 - CSW01_19135 0.22 +0.5 956,222 + CSW01_19135 0.22 -0.7 956,222 + CSW01_19135 0.22 +0.3 956,225 - CSW01_19135 0.23 +0.3 956,261 - CSW01_19135 0.31 +0.3
Or see this region's nucleotide sequence