Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17910

Experiment: LB_Anaerobic_120MIN_ZN12A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17905 and CSW01_17910 are separated by 654 nucleotidesCSW01_17910 and CSW01_17915 overlap by 4 nucleotides CSW01_17905: CSW01_17905 - aquaporin family protein, at 687,925 to 688,779 _17905 CSW01_17910: CSW01_17910 - anaerobic glycerol-3-phosphate dehydrogenase subunit A, at 689,434 to 691,077 _17910 CSW01_17915: CSW01_17915 - anaerobic glycerol-3-phosphate dehydrogenase subunit B, at 691,074 to 692,384 _17915 Position (kb) 689 690 691 692Strain fitness (log2 ratio) -2 -1 0 1 2at 688.457 kb on + strand, within CSW01_17905at 688.465 kb on - strand, within CSW01_17905at 688.513 kb on - strand, within CSW01_17905at 688.568 kb on + strand, within CSW01_17905at 688.568 kb on + strand, within CSW01_17905at 688.576 kb on - strand, within CSW01_17905at 688.719 kb on - strandat 688.721 kb on + strandat 688.744 kb on - strandat 688.763 kb on - strandat 688.848 kb on - strandat 689.311 kb on + strandat 689.418 kb on + strandat 689.418 kb on + strandat 689.430 kb on + strandat 689.441 kb on - strandat 689.441 kb on - strandat 689.441 kb on - strandat 689.501 kb on - strandat 689.510 kb on + strandat 689.534 kb on + strandat 689.573 kb on - strandat 689.755 kb on + strand, within CSW01_17910at 689.786 kb on - strand, within CSW01_17910at 689.839 kb on + strand, within CSW01_17910at 689.847 kb on - strand, within CSW01_17910at 689.890 kb on - strand, within CSW01_17910at 689.936 kb on + strand, within CSW01_17910at 689.950 kb on + strand, within CSW01_17910at 690.004 kb on + strand, within CSW01_17910at 690.004 kb on + strand, within CSW01_17910at 690.004 kb on + strand, within CSW01_17910at 690.004 kb on + strand, within CSW01_17910at 690.012 kb on - strand, within CSW01_17910at 690.012 kb on - strand, within CSW01_17910at 690.012 kb on - strand, within CSW01_17910at 690.012 kb on - strand, within CSW01_17910at 690.139 kb on + strand, within CSW01_17910at 690.176 kb on + strand, within CSW01_17910at 690.228 kb on + strand, within CSW01_17910at 690.239 kb on + strand, within CSW01_17910at 690.249 kb on + strand, within CSW01_17910at 690.428 kb on + strand, within CSW01_17910at 690.511 kb on - strand, within CSW01_17910at 690.550 kb on + strand, within CSW01_17910at 690.585 kb on - strand, within CSW01_17910at 690.684 kb on - strand, within CSW01_17910at 690.684 kb on - strand, within CSW01_17910at 690.770 kb on + strand, within CSW01_17910at 690.792 kb on - strand, within CSW01_17910at 690.835 kb on - strand, within CSW01_17910at 690.989 kb on + strandat 690.989 kb on + strandat 690.994 kb on + strandat 691.018 kb on + strandat 691.026 kb on - strandat 691.053 kb on - strandat 691.113 kb on + strandat 691.273 kb on - strand, within CSW01_17915at 691.296 kb on - strand, within CSW01_17915at 691.356 kb on + strand, within CSW01_17915at 691.364 kb on - strand, within CSW01_17915at 691.364 kb on - strand, within CSW01_17915at 691.385 kb on - strand, within CSW01_17915at 691.407 kb on - strand, within CSW01_17915at 691.436 kb on + strand, within CSW01_17915at 691.457 kb on + strand, within CSW01_17915at 691.540 kb on + strand, within CSW01_17915at 691.570 kb on + strand, within CSW01_17915at 691.578 kb on - strand, within CSW01_17915at 691.621 kb on + strand, within CSW01_17915at 691.631 kb on + strand, within CSW01_17915at 691.631 kb on + strand, within CSW01_17915at 691.639 kb on - strand, within CSW01_17915at 691.639 kb on - strand, within CSW01_17915at 691.639 kb on - strand, within CSW01_17915at 691.724 kb on - strand, within CSW01_17915at 691.855 kb on - strand, within CSW01_17915at 691.965 kb on - strand, within CSW01_17915at 691.971 kb on + strand, within CSW01_17915at 691.977 kb on - strand, within CSW01_17915at 692.023 kb on - strand, within CSW01_17915at 692.028 kb on - strand, within CSW01_17915at 692.052 kb on + strand, within CSW01_17915at 692.052 kb on + strand, within CSW01_17915at 692.055 kb on + strand, within CSW01_17915at 692.070 kb on - strand, within CSW01_17915

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12A
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688,457 + CSW01_17905 0.62 +1.3
688,465 - CSW01_17905 0.63 -0.3
688,513 - CSW01_17905 0.69 -2.0
688,568 + CSW01_17905 0.75 +1.2
688,568 + CSW01_17905 0.75 -0.7
688,576 - CSW01_17905 0.76 +0.4
688,719 - -1.3
688,721 + +2.2
688,744 - -1.8
688,763 - +0.7
688,848 - -0.3
689,311 + -0.8
689,418 + -0.0
689,418 + +0.9
689,430 + -0.4
689,441 - +0.2
689,441 - +0.3
689,441 - +0.4
689,501 - -1.1
689,510 + +0.4
689,534 + +1.2
689,573 - +0.5
689,755 + CSW01_17910 0.20 +0.6
689,786 - CSW01_17910 0.21 +0.8
689,839 + CSW01_17910 0.25 -0.5
689,847 - CSW01_17910 0.25 +0.8
689,890 - CSW01_17910 0.28 -0.6
689,936 + CSW01_17910 0.31 +0.6
689,950 + CSW01_17910 0.31 +0.0
690,004 + CSW01_17910 0.35 +0.3
690,004 + CSW01_17910 0.35 +0.5
690,004 + CSW01_17910 0.35 +0.1
690,004 + CSW01_17910 0.35 -0.1
690,012 - CSW01_17910 0.35 +1.0
690,012 - CSW01_17910 0.35 +0.8
690,012 - CSW01_17910 0.35 -0.3
690,012 - CSW01_17910 0.35 -0.2
690,139 + CSW01_17910 0.43 +0.4
690,176 + CSW01_17910 0.45 +0.1
690,228 + CSW01_17910 0.48 -0.2
690,239 + CSW01_17910 0.49 -0.9
690,249 + CSW01_17910 0.50 +1.0
690,428 + CSW01_17910 0.60 +0.1
690,511 - CSW01_17910 0.66 +0.3
690,550 + CSW01_17910 0.68 +0.1
690,585 - CSW01_17910 0.70 -0.0
690,684 - CSW01_17910 0.76 +0.3
690,684 - CSW01_17910 0.76 -0.6
690,770 + CSW01_17910 0.81 +0.8
690,792 - CSW01_17910 0.83 -0.7
690,835 - CSW01_17910 0.85 -2.3
690,989 + +0.6
690,989 + -0.1
690,994 + +1.4
691,018 + -0.8
691,026 - -0.0
691,053 - +0.2
691,113 + -0.2
691,273 - CSW01_17915 0.15 -0.1
691,296 - CSW01_17915 0.17 +0.4
691,356 + CSW01_17915 0.22 +1.3
691,364 - CSW01_17915 0.22 +0.6
691,364 - CSW01_17915 0.22 +0.1
691,385 - CSW01_17915 0.24 +1.8
691,407 - CSW01_17915 0.25 -0.8
691,436 + CSW01_17915 0.28 +0.6
691,457 + CSW01_17915 0.29 +0.0
691,540 + CSW01_17915 0.36 +0.5
691,570 + CSW01_17915 0.38 -0.1
691,578 - CSW01_17915 0.38 +1.8
691,621 + CSW01_17915 0.42 -0.1
691,631 + CSW01_17915 0.42 -0.3
691,631 + CSW01_17915 0.42 -0.5
691,639 - CSW01_17915 0.43 -0.8
691,639 - CSW01_17915 0.43 -0.4
691,639 - CSW01_17915 0.43 +0.6
691,724 - CSW01_17915 0.50 +0.3
691,855 - CSW01_17915 0.60 +0.2
691,965 - CSW01_17915 0.68 +0.6
691,971 + CSW01_17915 0.68 -0.6
691,977 - CSW01_17915 0.69 +0.4
692,023 - CSW01_17915 0.72 +0.6
692,028 - CSW01_17915 0.73 +0.3
692,052 + CSW01_17915 0.75 -0.8
692,052 + CSW01_17915 0.75 +0.9
692,055 + CSW01_17915 0.75 -1.0
692,070 - CSW01_17915 0.76 +0.2

Or see this region's nucleotide sequence