Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17730

Experiment: LB_Anaerobic_120MIN_ZN12A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17725 and CSW01_17730 are separated by 30 nucleotidesCSW01_17730 and CSW01_17735 are separated by 54 nucleotidesCSW01_17735 and CSW01_17740 are separated by 68 nucleotides CSW01_17725: CSW01_17725 - TMAO reductase system sensor histidine kinase/response regulator TorS, at 651,003 to 653,957 _17725 CSW01_17730: CSW01_17730 - TMAO reductase system periplasmic protein TorT, at 653,988 to 655,037 _17730 CSW01_17735: CSW01_17735 - methylglyoxal synthase, at 655,092 to 655,547 _17735 CSW01_17740: CSW01_17740 - nicotinamidase/pyrazinamidase, at 655,616 to 656,236 _17740 Position (kb) 653 654 655 656Strain fitness (log2 ratio) -2 -1 0 1 2 3at 652.993 kb on - strand, within CSW01_17725at 653.011 kb on - strand, within CSW01_17725at 653.035 kb on + strand, within CSW01_17725at 653.090 kb on + strand, within CSW01_17725at 653.106 kb on - strand, within CSW01_17725at 653.106 kb on - strand, within CSW01_17725at 653.138 kb on + strand, within CSW01_17725at 653.138 kb on + strand, within CSW01_17725at 653.146 kb on - strand, within CSW01_17725at 653.146 kb on - strand, within CSW01_17725at 653.146 kb on - strand, within CSW01_17725at 653.146 kb on - strand, within CSW01_17725at 653.326 kb on - strand, within CSW01_17725at 653.388 kb on - strand, within CSW01_17725at 653.449 kb on - strand, within CSW01_17725at 653.545 kb on + strand, within CSW01_17725at 653.547 kb on + strand, within CSW01_17725at 653.606 kb on - strand, within CSW01_17725at 653.606 kb on - strand, within CSW01_17725at 653.614 kb on + strand, within CSW01_17725at 653.617 kb on - strand, within CSW01_17725at 653.617 kb on - strand, within CSW01_17725at 653.660 kb on + strand, within CSW01_17725at 653.750 kb on + strandat 653.758 kb on - strandat 653.780 kb on + strandat 653.879 kb on - strandat 653.998 kb on + strandat 653.998 kb on + strandat 654.011 kb on - strandat 654.015 kb on + strandat 654.054 kb on - strandat 654.196 kb on - strand, within CSW01_17730at 654.290 kb on - strand, within CSW01_17730at 654.450 kb on - strand, within CSW01_17730at 654.536 kb on - strand, within CSW01_17730at 654.585 kb on - strand, within CSW01_17730at 654.672 kb on + strand, within CSW01_17730at 654.673 kb on + strand, within CSW01_17730at 654.681 kb on - strand, within CSW01_17730at 654.686 kb on - strand, within CSW01_17730at 654.854 kb on + strand, within CSW01_17730at 654.959 kb on - strandat 655.177 kb on + strand, within CSW01_17735at 655.177 kb on + strand, within CSW01_17735at 655.177 kb on + strand, within CSW01_17735at 655.185 kb on - strand, within CSW01_17735at 655.185 kb on - strand, within CSW01_17735at 655.185 kb on - strand, within CSW01_17735at 655.185 kb on - strand, within CSW01_17735at 655.185 kb on - strand, within CSW01_17735at 655.200 kb on - strand, within CSW01_17735at 655.532 kb on - strandat 655.548 kb on + strandat 655.613 kb on + strandat 655.633 kb on + strandat 655.641 kb on - strandat 655.705 kb on + strand, within CSW01_17740at 655.713 kb on - strand, within CSW01_17740at 655.713 kb on - strand, within CSW01_17740at 655.911 kb on - strand, within CSW01_17740at 655.996 kb on + strand, within CSW01_17740at 656.030 kb on - strand, within CSW01_17740

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12A
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652,993 - CSW01_17725 0.67 -0.6
653,011 - CSW01_17725 0.68 +0.7
653,035 + CSW01_17725 0.69 +1.0
653,090 + CSW01_17725 0.71 +0.2
653,106 - CSW01_17725 0.71 -0.7
653,106 - CSW01_17725 0.71 -0.3
653,138 + CSW01_17725 0.72 -0.7
653,138 + CSW01_17725 0.72 -0.3
653,146 - CSW01_17725 0.73 -0.0
653,146 - CSW01_17725 0.73 -0.5
653,146 - CSW01_17725 0.73 -0.0
653,146 - CSW01_17725 0.73 -1.2
653,326 - CSW01_17725 0.79 +1.1
653,388 - CSW01_17725 0.81 +0.8
653,449 - CSW01_17725 0.83 +0.2
653,545 + CSW01_17725 0.86 +1.5
653,547 + CSW01_17725 0.86 -0.0
653,606 - CSW01_17725 0.88 -1.2
653,606 - CSW01_17725 0.88 -0.2
653,614 + CSW01_17725 0.88 +0.1
653,617 - CSW01_17725 0.88 -0.0
653,617 - CSW01_17725 0.88 -0.1
653,660 + CSW01_17725 0.90 +0.0
653,750 + -0.8
653,758 - +0.4
653,780 + +0.7
653,879 - +0.3
653,998 + +1.3
653,998 + +0.7
654,011 - +0.7
654,015 + +0.6
654,054 - +0.0
654,196 - CSW01_17730 0.20 +0.2
654,290 - CSW01_17730 0.29 -0.0
654,450 - CSW01_17730 0.44 -0.0
654,536 - CSW01_17730 0.52 +0.1
654,585 - CSW01_17730 0.57 -1.0
654,672 + CSW01_17730 0.65 -1.6
654,673 + CSW01_17730 0.65 -0.4
654,681 - CSW01_17730 0.66 +1.2
654,686 - CSW01_17730 0.66 +0.8
654,854 + CSW01_17730 0.82 -0.7
654,959 - -0.5
655,177 + CSW01_17735 0.19 -0.2
655,177 + CSW01_17735 0.19 +1.2
655,177 + CSW01_17735 0.19 -0.2
655,185 - CSW01_17735 0.20 -2.4
655,185 - CSW01_17735 0.20 -0.4
655,185 - CSW01_17735 0.20 +1.5
655,185 - CSW01_17735 0.20 +0.7
655,185 - CSW01_17735 0.20 +0.6
655,200 - CSW01_17735 0.24 +0.7
655,532 - +0.2
655,548 + -0.7
655,613 + -0.2
655,633 + +0.3
655,641 - +0.1
655,705 + CSW01_17740 0.14 -0.2
655,713 - CSW01_17740 0.16 +0.2
655,713 - CSW01_17740 0.16 +3.5
655,911 - CSW01_17740 0.48 -0.2
655,996 + CSW01_17740 0.61 +1.2
656,030 - CSW01_17740 0.67 -0.0

Or see this region's nucleotide sequence