Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17660

Experiment: LB_Anaerobic_120MIN_ZN12A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_17655 and CSW01_17660 are separated by 3 nucleotidesCSW01_17660 and CSW01_17665 are separated by 71 nucleotidesCSW01_17665 and CSW01_17670 are separated by 76 nucleotides CSW01_17655: CSW01_17655 - protein translocase subunit SecF, at 628,914 to 629,816 _17655 CSW01_17660: CSW01_17660 - protein translocase subunit SecD, at 629,820 to 631,658 _17660 CSW01_17665: CSW01_17665 - hypothetical protein, at 631,730 to 632,185 _17665 CSW01_17670: CSW01_17670 - hypothetical protein, at 632,262 to 632,933 _17670 Position (kb) 629 630 631 632Strain fitness (log2 ratio) -2 -1 0 1 2at 628.893 kb on + strandat 628.947 kb on - strandat 628.950 kb on - strandat 628.955 kb on - strandat 628.956 kb on + strandat 628.975 kb on + strandat 628.979 kb on + strandat 628.980 kb on + strandat 628.982 kb on - strandat 628.984 kb on + strandat 629.062 kb on - strand, within CSW01_17655at 629.122 kb on + strand, within CSW01_17655at 629.195 kb on - strand, within CSW01_17655at 629.419 kb on + strand, within CSW01_17655at 629.502 kb on + strand, within CSW01_17655at 629.520 kb on + strand, within CSW01_17655at 629.528 kb on - strand, within CSW01_17655at 629.528 kb on - strand, within CSW01_17655at 629.551 kb on + strand, within CSW01_17655at 629.811 kb on + strandat 629.904 kb on + strandat 629.937 kb on + strandat 629.945 kb on - strandat 630.027 kb on + strand, within CSW01_17660at 630.035 kb on - strand, within CSW01_17660at 630.035 kb on - strand, within CSW01_17660at 630.065 kb on - strand, within CSW01_17660at 630.097 kb on - strand, within CSW01_17660at 630.143 kb on - strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.167 kb on - strand, within CSW01_17660at 630.167 kb on - strand, within CSW01_17660at 630.167 kb on - strand, within CSW01_17660at 630.172 kb on - strand, within CSW01_17660at 630.356 kb on + strand, within CSW01_17660at 630.502 kb on - strand, within CSW01_17660at 630.502 kb on - strand, within CSW01_17660at 630.634 kb on + strand, within CSW01_17660at 630.634 kb on + strand, within CSW01_17660at 630.648 kb on + strand, within CSW01_17660at 630.697 kb on - strand, within CSW01_17660at 630.819 kb on - strand, within CSW01_17660at 630.834 kb on + strand, within CSW01_17660at 630.859 kb on - strand, within CSW01_17660at 630.916 kb on + strand, within CSW01_17660at 631.004 kb on + strand, within CSW01_17660at 631.065 kb on + strand, within CSW01_17660at 631.065 kb on + strand, within CSW01_17660at 631.073 kb on - strand, within CSW01_17660at 631.080 kb on - strand, within CSW01_17660at 631.124 kb on + strand, within CSW01_17660at 631.132 kb on - strand, within CSW01_17660at 631.150 kb on - strand, within CSW01_17660at 631.150 kb on - strand, within CSW01_17660at 631.208 kb on - strand, within CSW01_17660at 631.238 kb on - strand, within CSW01_17660at 631.334 kb on - strand, within CSW01_17660at 631.345 kb on + strand, within CSW01_17660at 631.553 kb on + strandat 631.769 kb on - strandat 631.769 kb on - strandat 631.936 kb on + strand, within CSW01_17665at 632.023 kb on - strand, within CSW01_17665at 632.130 kb on + strand, within CSW01_17665at 632.130 kb on + strand, within CSW01_17665at 632.154 kb on + strandat 632.188 kb on - strandat 632.227 kb on - strandat 632.239 kb on - strandat 632.309 kb on - strandat 632.309 kb on - strandat 632.324 kb on - strandat 632.324 kb on - strandat 632.324 kb on - strandat 632.333 kb on + strand, within CSW01_17670at 632.354 kb on + strand, within CSW01_17670at 632.354 kb on + strand, within CSW01_17670at 632.568 kb on - strand, within CSW01_17670at 632.568 kb on - strand, within CSW01_17670

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12A
remove
628,893 + -0.5
628,947 - -0.3
628,950 - -1.4
628,955 - -0.0
628,956 + -0.4
628,975 + +0.3
628,979 + +0.2
628,980 + +0.9
628,982 - +0.2
628,984 + -0.4
629,062 - CSW01_17655 0.16 +0.2
629,122 + CSW01_17655 0.23 +2.0
629,195 - CSW01_17655 0.31 -0.1
629,419 + CSW01_17655 0.56 +1.3
629,502 + CSW01_17655 0.65 +0.3
629,520 + CSW01_17655 0.67 +0.8
629,528 - CSW01_17655 0.68 +0.2
629,528 - CSW01_17655 0.68 +0.4
629,551 + CSW01_17655 0.71 -0.2
629,811 + -1.1
629,904 + -2.2
629,937 + +2.2
629,945 - +0.6
630,027 + CSW01_17660 0.11 -0.4
630,035 - CSW01_17660 0.12 +0.6
630,035 - CSW01_17660 0.12 -1.4
630,065 - CSW01_17660 0.13 +1.1
630,097 - CSW01_17660 0.15 +0.5
630,143 - CSW01_17660 0.18 +1.9
630,159 + CSW01_17660 0.18 -0.5
630,159 + CSW01_17660 0.18 +0.1
630,159 + CSW01_17660 0.18 +0.1
630,159 + CSW01_17660 0.18 +0.0
630,159 + CSW01_17660 0.18 +1.3
630,159 + CSW01_17660 0.18 -0.2
630,167 - CSW01_17660 0.19 -0.7
630,167 - CSW01_17660 0.19 +0.7
630,167 - CSW01_17660 0.19 +0.3
630,172 - CSW01_17660 0.19 +0.8
630,356 + CSW01_17660 0.29 -0.2
630,502 - CSW01_17660 0.37 +1.0
630,502 - CSW01_17660 0.37 +0.6
630,634 + CSW01_17660 0.44 +0.3
630,634 + CSW01_17660 0.44 -0.7
630,648 + CSW01_17660 0.45 -0.2
630,697 - CSW01_17660 0.48 +0.5
630,819 - CSW01_17660 0.54 +0.8
630,834 + CSW01_17660 0.55 -1.4
630,859 - CSW01_17660 0.56 +0.8
630,916 + CSW01_17660 0.60 +0.5
631,004 + CSW01_17660 0.64 +0.7
631,065 + CSW01_17660 0.68 -0.0
631,065 + CSW01_17660 0.68 +1.1
631,073 - CSW01_17660 0.68 +0.7
631,080 - CSW01_17660 0.69 +0.5
631,124 + CSW01_17660 0.71 +0.4
631,132 - CSW01_17660 0.71 -0.5
631,150 - CSW01_17660 0.72 -0.2
631,150 - CSW01_17660 0.72 +0.9
631,208 - CSW01_17660 0.75 +0.3
631,238 - CSW01_17660 0.77 +0.2
631,334 - CSW01_17660 0.82 -0.3
631,345 + CSW01_17660 0.83 +0.2
631,553 + -0.4
631,769 - -0.7
631,769 - +0.2
631,936 + CSW01_17665 0.45 -1.2
632,023 - CSW01_17665 0.64 +0.0
632,130 + CSW01_17665 0.88 -0.2
632,130 + CSW01_17665 0.88 -0.3
632,154 + +0.7
632,188 - +0.2
632,227 - +0.6
632,239 - +0.7
632,309 - +1.5
632,309 - +0.7
632,324 - +1.2
632,324 - -0.2
632,324 - +1.1
632,333 + CSW01_17670 0.11 +0.4
632,354 + CSW01_17670 0.14 -0.9
632,354 + CSW01_17670 0.14 -0.4
632,568 - CSW01_17670 0.46 -0.0
632,568 - CSW01_17670 0.46 +0.1

Or see this region's nucleotide sequence