Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17575

Experiment: LB_Anaerobic_120MIN_ZN12A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17565 and CSW01_17570 are separated by 157 nucleotidesCSW01_17570 and CSW01_17575 are separated by 5 nucleotidesCSW01_17575 and CSW01_17580 overlap by 4 nucleotides CSW01_17565: CSW01_17565 - nitrate/nitrite two-component system sensor histidine kinase NarQ, at 607,978 to 609,729 _17565 CSW01_17570: CSW01_17570 - ferredoxin-type protein NapF, at 609,887 to 610,393 _17570 CSW01_17575: CSW01_17575 - mycothiol reductase, at 610,399 to 610,740 _17575 CSW01_17580: CSW01_17580 - periplasmic nitrate reductase subunit alpha, at 610,737 to 613,226 _17580 Position (kb) 610 611Strain fitness (log2 ratio) -2 -1 0 1 2at 609.421 kb on + strand, within CSW01_17565at 609.431 kb on - strand, within CSW01_17565at 609.455 kb on + strand, within CSW01_17565at 609.455 kb on + strand, within CSW01_17565at 609.456 kb on - strand, within CSW01_17565at 609.463 kb on - strand, within CSW01_17565at 609.533 kb on + strand, within CSW01_17565at 609.541 kb on - strand, within CSW01_17565at 609.581 kb on - strandat 609.628 kb on - strandat 609.700 kb on - strandat 609.700 kb on - strandat 609.730 kb on + strandat 609.738 kb on - strandat 609.740 kb on + strandat 609.740 kb on + strandat 609.748 kb on - strandat 609.748 kb on - strandat 609.755 kb on - strandat 609.884 kb on + strandat 609.967 kb on + strand, within CSW01_17570at 610.021 kb on + strand, within CSW01_17570at 610.021 kb on + strand, within CSW01_17570at 610.031 kb on - strand, within CSW01_17570at 610.121 kb on + strand, within CSW01_17570at 610.121 kb on + strand, within CSW01_17570at 610.126 kb on + strand, within CSW01_17570at 610.129 kb on - strand, within CSW01_17570at 610.129 kb on - strand, within CSW01_17570at 610.139 kb on - strand, within CSW01_17570at 610.159 kb on - strand, within CSW01_17570at 610.163 kb on + strand, within CSW01_17570at 610.193 kb on - strand, within CSW01_17570at 610.198 kb on - strand, within CSW01_17570at 610.287 kb on + strand, within CSW01_17570at 610.300 kb on + strand, within CSW01_17570at 610.305 kb on + strand, within CSW01_17570at 610.305 kb on + strand, within CSW01_17570at 610.308 kb on - strand, within CSW01_17570at 610.308 kb on - strand, within CSW01_17570at 610.384 kb on - strandat 610.384 kb on - strandat 610.499 kb on + strand, within CSW01_17575at 610.594 kb on + strand, within CSW01_17575at 610.596 kb on - strand, within CSW01_17575at 610.641 kb on + strand, within CSW01_17575at 610.701 kb on - strand, within CSW01_17575at 610.701 kb on - strand, within CSW01_17575at 610.731 kb on - strandat 610.895 kb on + strandat 610.900 kb on + strandat 610.900 kb on + strandat 610.900 kb on + strandat 610.900 kb on + strandat 610.908 kb on - strandat 610.908 kb on - strandat 610.908 kb on - strandat 610.908 kb on - strandat 610.908 kb on - strandat 610.908 kb on - strandat 610.913 kb on - strandat 610.954 kb on - strandat 610.956 kb on - strandat 610.970 kb on - strandat 610.984 kb on + strandat 611.157 kb on + strand, within CSW01_17580at 611.157 kb on + strand, within CSW01_17580at 611.182 kb on + strand, within CSW01_17580at 611.182 kb on + strand, within CSW01_17580at 611.190 kb on - strand, within CSW01_17580at 611.190 kb on - strand, within CSW01_17580at 611.254 kb on + strand, within CSW01_17580at 611.254 kb on + strand, within CSW01_17580at 611.298 kb on + strand, within CSW01_17580at 611.300 kb on - strand, within CSW01_17580at 611.317 kb on + strand, within CSW01_17580at 611.325 kb on - strand, within CSW01_17580at 611.357 kb on + strand, within CSW01_17580at 611.424 kb on + strand, within CSW01_17580

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12A
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609,421 + CSW01_17565 0.82 -0.3
609,431 - CSW01_17565 0.83 -0.5
609,455 + CSW01_17565 0.84 +0.3
609,455 + CSW01_17565 0.84 +0.1
609,456 - CSW01_17565 0.84 +0.9
609,463 - CSW01_17565 0.85 -0.3
609,533 + CSW01_17565 0.89 +0.3
609,541 - CSW01_17565 0.89 -0.0
609,581 - +0.2
609,628 - +1.0
609,700 - -0.4
609,700 - +0.2
609,730 + +0.5
609,738 - -0.7
609,740 + -0.1
609,740 + -0.5
609,748 - +1.1
609,748 - -0.8
609,755 - +0.7
609,884 + -0.2
609,967 + CSW01_17570 0.16 -0.3
610,021 + CSW01_17570 0.26 -1.0
610,021 + CSW01_17570 0.26 -0.1
610,031 - CSW01_17570 0.28 +0.9
610,121 + CSW01_17570 0.46 +1.9
610,121 + CSW01_17570 0.46 +0.2
610,126 + CSW01_17570 0.47 +2.1
610,129 - CSW01_17570 0.48 +0.4
610,129 - CSW01_17570 0.48 -0.4
610,139 - CSW01_17570 0.50 +1.0
610,159 - CSW01_17570 0.54 +0.3
610,163 + CSW01_17570 0.54 +0.2
610,193 - CSW01_17570 0.60 +0.1
610,198 - CSW01_17570 0.61 +0.2
610,287 + CSW01_17570 0.79 +0.2
610,300 + CSW01_17570 0.81 -2.4
610,305 + CSW01_17570 0.82 +0.9
610,305 + CSW01_17570 0.82 -0.3
610,308 - CSW01_17570 0.83 -2.2
610,308 - CSW01_17570 0.83 +0.4
610,384 - +0.3
610,384 - +0.2
610,499 + CSW01_17575 0.29 -0.8
610,594 + CSW01_17575 0.57 -0.4
610,596 - CSW01_17575 0.58 -0.4
610,641 + CSW01_17575 0.71 -0.3
610,701 - CSW01_17575 0.88 +0.0
610,701 - CSW01_17575 0.88 -1.3
610,731 - +0.5
610,895 + -1.3
610,900 + +0.1
610,900 + +0.4
610,900 + -1.4
610,900 + -0.8
610,908 - +0.3
610,908 - -0.7
610,908 - +0.3
610,908 - +0.2
610,908 - -0.0
610,908 - -0.3
610,913 - -0.6
610,954 - -0.3
610,956 - +1.2
610,970 - -0.1
610,984 + -1.0
611,157 + CSW01_17580 0.17 -0.0
611,157 + CSW01_17580 0.17 +0.5
611,182 + CSW01_17580 0.18 -0.1
611,182 + CSW01_17580 0.18 +0.5
611,190 - CSW01_17580 0.18 +1.0
611,190 - CSW01_17580 0.18 +1.2
611,254 + CSW01_17580 0.21 -1.0
611,254 + CSW01_17580 0.21 -0.1
611,298 + CSW01_17580 0.23 -1.3
611,300 - CSW01_17580 0.23 -0.8
611,317 + CSW01_17580 0.23 -0.1
611,325 - CSW01_17580 0.24 +0.9
611,357 + CSW01_17580 0.25 -1.4
611,424 + CSW01_17580 0.28 -0.1

Or see this region's nucleotide sequence