Experiment: LB_Anaerobic_120MIN_ZN12A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17540 and CSW01_17545 are separated by 338 nucleotides CSW01_17545 and CSW01_17550 are separated by 96 nucleotides
CSW01_17540: CSW01_17540 - sodium:solute symporter, at 601,752 to 603,293
_17540
CSW01_17545: CSW01_17545 - MFS transporter, at 603,632 to 604,927
_17545
CSW01_17550: CSW01_17550 - nuclear transport factor 2 family protein, at 605,024 to 606,040
_17550
Position (kb) 603
604
605 Strain fitness (log2 ratio) -1
0
1
2 at 602.759 kb on - strand, within CSW01_17540 at 602.888 kb on + strand, within CSW01_17540 at 602.888 kb on + strand, within CSW01_17540 at 602.917 kb on + strand, within CSW01_17540 at 602.932 kb on + strand, within CSW01_17540 at 602.940 kb on - strand, within CSW01_17540 at 602.941 kb on - strand, within CSW01_17540 at 602.954 kb on + strand, within CSW01_17540 at 602.954 kb on + strand, within CSW01_17540 at 602.954 kb on + strand, within CSW01_17540 at 602.974 kb on - strand, within CSW01_17540 at 602.974 kb on - strand, within CSW01_17540 at 602.974 kb on - strand, within CSW01_17540 at 603.124 kb on + strand, within CSW01_17540 at 603.137 kb on - strand, within CSW01_17540 at 603.395 kb on - strand at 603.405 kb on - strand at 603.683 kb on - strand at 603.802 kb on + strand, within CSW01_17545 at 603.810 kb on - strand, within CSW01_17545 at 603.810 kb on - strand, within CSW01_17545 at 603.885 kb on + strand, within CSW01_17545 at 603.928 kb on - strand, within CSW01_17545 at 604.033 kb on + strand, within CSW01_17545 at 604.039 kb on - strand, within CSW01_17545 at 604.041 kb on - strand, within CSW01_17545 at 604.185 kb on - strand, within CSW01_17545 at 604.202 kb on + strand, within CSW01_17545 at 604.266 kb on - strand, within CSW01_17545 at 604.268 kb on + strand, within CSW01_17545 at 604.276 kb on - strand, within CSW01_17545 at 604.276 kb on - strand, within CSW01_17545 at 604.356 kb on - strand, within CSW01_17545 at 604.566 kb on + strand, within CSW01_17545 at 604.711 kb on - strand, within CSW01_17545 at 604.719 kb on + strand, within CSW01_17545 at 604.761 kb on + strand, within CSW01_17545 at 604.897 kb on + strand at 604.978 kb on + strand at 604.983 kb on + strand at 605.072 kb on - strand at 605.148 kb on + strand, within CSW01_17550 at 605.345 kb on - strand, within CSW01_17550 at 605.386 kb on + strand, within CSW01_17550 at 605.386 kb on + strand, within CSW01_17550 at 605.386 kb on + strand, within CSW01_17550 at 605.392 kb on - strand, within CSW01_17550 at 605.423 kb on + strand, within CSW01_17550 at 605.464 kb on + strand, within CSW01_17550 at 605.505 kb on + strand, within CSW01_17550 at 605.513 kb on - strand, within CSW01_17550 at 605.524 kb on - strand, within CSW01_17550 at 605.571 kb on + strand, within CSW01_17550 at 605.610 kb on - strand, within CSW01_17550 at 605.627 kb on + strand, within CSW01_17550 at 605.632 kb on + strand, within CSW01_17550 at 605.635 kb on - strand, within CSW01_17550 at 605.635 kb on - strand, within CSW01_17550 at 605.635 kb on - strand, within CSW01_17550 at 605.648 kb on - strand, within CSW01_17550 at 605.748 kb on - strand, within CSW01_17550 at 605.806 kb on + strand, within CSW01_17550 at 605.814 kb on - strand, within CSW01_17550
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12A remove 602,759 - CSW01_17540 0.65 -0.2 602,888 + CSW01_17540 0.74 -0.1 602,888 + CSW01_17540 0.74 +1.3 602,917 + CSW01_17540 0.76 -1.5 602,932 + CSW01_17540 0.77 -0.5 602,940 - CSW01_17540 0.77 +0.2 602,941 - CSW01_17540 0.77 -0.3 602,954 + CSW01_17540 0.78 -0.2 602,954 + CSW01_17540 0.78 -0.3 602,954 + CSW01_17540 0.78 +0.3 602,974 - CSW01_17540 0.79 -0.6 602,974 - CSW01_17540 0.79 +0.2 602,974 - CSW01_17540 0.79 +0.2 603,124 + CSW01_17540 0.89 -0.2 603,137 - CSW01_17540 0.90 +0.8 603,395 - +0.8 603,405 - -0.5 603,683 - +1.6 603,802 + CSW01_17545 0.13 -0.1 603,810 - CSW01_17545 0.14 +1.8 603,810 - CSW01_17545 0.14 +1.0 603,885 + CSW01_17545 0.20 +2.5 603,928 - CSW01_17545 0.23 -0.7 604,033 + CSW01_17545 0.31 -0.4 604,039 - CSW01_17545 0.31 -0.7 604,041 - CSW01_17545 0.32 +1.1 604,185 - CSW01_17545 0.43 +0.1 604,202 + CSW01_17545 0.44 -0.1 604,266 - CSW01_17545 0.49 +0.0 604,268 + CSW01_17545 0.49 +0.3 604,276 - CSW01_17545 0.50 -1.2 604,276 - CSW01_17545 0.50 +0.3 604,356 - CSW01_17545 0.56 +0.7 604,566 + CSW01_17545 0.72 +0.8 604,711 - CSW01_17545 0.83 +0.2 604,719 + CSW01_17545 0.84 -0.5 604,761 + CSW01_17545 0.87 -0.1 604,897 + +1.2 604,978 + -0.3 604,983 + -0.1 605,072 - -0.4 605,148 + CSW01_17550 0.12 +0.3 605,345 - CSW01_17550 0.32 +0.1 605,386 + CSW01_17550 0.36 -0.6 605,386 + CSW01_17550 0.36 -1.0 605,386 + CSW01_17550 0.36 -0.5 605,392 - CSW01_17550 0.36 -0.3 605,423 + CSW01_17550 0.39 +0.4 605,464 + CSW01_17550 0.43 +0.1 605,505 + CSW01_17550 0.47 +0.2 605,513 - CSW01_17550 0.48 +0.5 605,524 - CSW01_17550 0.49 +1.4 605,571 + CSW01_17550 0.54 -0.7 605,610 - CSW01_17550 0.58 -0.6 605,627 + CSW01_17550 0.59 +0.5 605,632 + CSW01_17550 0.60 +0.2 605,635 - CSW01_17550 0.60 -0.0 605,635 - CSW01_17550 0.60 -0.6 605,635 - CSW01_17550 0.60 +0.8 605,648 - CSW01_17550 0.61 -0.1 605,748 - CSW01_17550 0.71 +0.8 605,806 + CSW01_17550 0.77 +0.8 605,814 - CSW01_17550 0.78 -0.3
Or see this region's nucleotide sequence