Experiment: LB_Anaerobic_120MIN_ZN12A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17095 and CSW01_17100 are separated by 49 nucleotides CSW01_17100 and CSW01_17105 are separated by 217 nucleotides
CSW01_17095: CSW01_17095 - protein acetyltransferase, at 509,289 to 511,970
_17095
CSW01_17100: CSW01_17100 - LysR family transcriptional regulator, at 512,020 to 512,907
_17100
CSW01_17105: CSW01_17105 - TonB-dependent hemoglobin/transferrin/lactoferrin family receptor, at 513,125 to 515,221
_17105
Position (kb) 512
513 Strain fitness (log2 ratio) -2
-1
0
1
2 at 511.041 kb on + strand, within CSW01_17095 at 511.138 kb on + strand, within CSW01_17095 at 511.215 kb on - strand, within CSW01_17095 at 511.332 kb on - strand, within CSW01_17095 at 511.384 kb on - strand, within CSW01_17095 at 511.475 kb on + strand, within CSW01_17095 at 511.531 kb on + strand, within CSW01_17095 at 511.539 kb on - strand, within CSW01_17095 at 511.613 kb on - strand, within CSW01_17095 at 511.863 kb on + strand at 512.055 kb on - strand at 512.063 kb on + strand at 512.103 kb on - strand at 512.121 kb on + strand, within CSW01_17100 at 512.159 kb on + strand, within CSW01_17100 at 512.165 kb on + strand, within CSW01_17100 at 512.167 kb on - strand, within CSW01_17100 at 512.173 kb on - strand, within CSW01_17100 at 512.189 kb on + strand, within CSW01_17100 at 512.333 kb on + strand, within CSW01_17100 at 512.363 kb on - strand, within CSW01_17100 at 512.388 kb on + strand, within CSW01_17100 at 512.396 kb on - strand, within CSW01_17100 at 512.412 kb on + strand, within CSW01_17100 at 512.557 kb on - strand, within CSW01_17100 at 512.597 kb on + strand, within CSW01_17100 at 512.605 kb on - strand, within CSW01_17100 at 512.654 kb on + strand, within CSW01_17100 at 512.687 kb on + strand, within CSW01_17100 at 512.695 kb on - strand, within CSW01_17100 at 512.695 kb on - strand, within CSW01_17100 at 512.765 kb on + strand, within CSW01_17100 at 512.816 kb on + strand, within CSW01_17100 at 512.819 kb on - strand at 512.824 kb on - strand at 512.856 kb on + strand at 512.891 kb on - strand at 512.891 kb on - strand at 513.134 kb on + strand at 513.295 kb on - strand at 513.311 kb on - strand at 513.570 kb on + strand, within CSW01_17105 at 513.570 kb on + strand, within CSW01_17105 at 513.571 kb on - strand, within CSW01_17105 at 513.578 kb on - strand, within CSW01_17105 at 513.578 kb on - strand, within CSW01_17105 at 513.637 kb on + strand, within CSW01_17105 at 513.694 kb on + strand, within CSW01_17105 at 513.701 kb on + strand, within CSW01_17105 at 513.741 kb on + strand, within CSW01_17105 at 513.846 kb on - strand, within CSW01_17105
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12A remove 511,041 + CSW01_17095 0.65 -0.0 511,138 + CSW01_17095 0.69 -1.4 511,215 - CSW01_17095 0.72 -0.3 511,332 - CSW01_17095 0.76 +0.4 511,384 - CSW01_17095 0.78 -2.2 511,475 + CSW01_17095 0.82 -0.3 511,531 + CSW01_17095 0.84 -0.4 511,539 - CSW01_17095 0.84 +0.7 511,613 - CSW01_17095 0.87 -0.0 511,863 + +0.6 512,055 - +0.4 512,063 + +0.6 512,103 - +1.0 512,121 + CSW01_17100 0.11 +0.2 512,159 + CSW01_17100 0.16 +0.3 512,165 + CSW01_17100 0.16 +0.6 512,167 - CSW01_17100 0.17 -0.8 512,173 - CSW01_17100 0.17 +0.2 512,189 + CSW01_17100 0.19 -1.8 512,333 + CSW01_17100 0.35 -2.3 512,363 - CSW01_17100 0.39 +0.8 512,388 + CSW01_17100 0.41 +0.0 512,396 - CSW01_17100 0.42 +0.6 512,412 + CSW01_17100 0.44 -0.4 512,557 - CSW01_17100 0.60 -0.1 512,597 + CSW01_17100 0.65 +0.2 512,605 - CSW01_17100 0.66 +0.2 512,654 + CSW01_17100 0.71 +0.5 512,687 + CSW01_17100 0.75 +1.0 512,695 - CSW01_17100 0.76 +0.5 512,695 - CSW01_17100 0.76 +0.9 512,765 + CSW01_17100 0.84 -0.2 512,816 + CSW01_17100 0.90 +2.5 512,819 - +0.4 512,824 - -0.1 512,856 + +0.0 512,891 - -0.7 512,891 - -0.0 513,134 + -0.6 513,295 - +0.1 513,311 - +0.1 513,570 + CSW01_17105 0.21 +0.1 513,570 + CSW01_17105 0.21 -1.1 513,571 - CSW01_17105 0.21 -0.4 513,578 - CSW01_17105 0.22 +0.7 513,578 - CSW01_17105 0.22 -1.2 513,637 + CSW01_17105 0.24 -0.3 513,694 + CSW01_17105 0.27 +0.3 513,701 + CSW01_17105 0.27 +1.3 513,741 + CSW01_17105 0.29 -0.1 513,846 - CSW01_17105 0.34 +0.4
Or see this region's nucleotide sequence