Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16930

Experiment: LB_Anaerobic_120MIN_ZN12A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16920 and CSW01_16925 are separated by 386 nucleotidesCSW01_16925 and CSW01_16930 overlap by 4 nucleotidesCSW01_16930 and CSW01_16935 are separated by 107 nucleotides CSW01_16920: CSW01_16920 - hypothetical protein, at 472,545 to 473,180 _16920 CSW01_16925: CSW01_16925 - cytochrome b, at 473,567 to 474,112 _16925 CSW01_16930: CSW01_16930 - YceI family protein, at 474,109 to 474,678 _16930 CSW01_16935: CSW01_16935 - formate transporter FocA, at 474,786 to 476,237 _16935 Position (kb) 474 475Strain fitness (log2 ratio) -3 -2 -1 0 1at 473.122 kb on + strandat 473.228 kb on - strandat 473.288 kb on - strandat 473.296 kb on + strandat 473.296 kb on + strandat 473.296 kb on + strandat 473.301 kb on + strandat 473.304 kb on - strandat 473.304 kb on - strandat 473.304 kb on - strandat 473.373 kb on + strandat 473.373 kb on + strandat 473.381 kb on - strandat 473.381 kb on - strandat 473.526 kb on + strandat 473.548 kb on + strandat 473.627 kb on + strand, within CSW01_16925at 473.677 kb on + strand, within CSW01_16925at 473.695 kb on + strand, within CSW01_16925at 473.695 kb on + strand, within CSW01_16925at 473.705 kb on + strand, within CSW01_16925at 473.708 kb on - strand, within CSW01_16925at 473.716 kb on - strand, within CSW01_16925at 473.730 kb on - strand, within CSW01_16925at 473.781 kb on + strand, within CSW01_16925at 473.887 kb on - strand, within CSW01_16925at 473.910 kb on + strand, within CSW01_16925at 473.911 kb on - strand, within CSW01_16925at 473.918 kb on - strand, within CSW01_16925at 473.918 kb on - strand, within CSW01_16925at 473.918 kb on - strand, within CSW01_16925at 473.936 kb on - strand, within CSW01_16925at 474.002 kb on + strand, within CSW01_16925at 474.036 kb on - strand, within CSW01_16925at 474.047 kb on + strand, within CSW01_16925at 474.047 kb on + strand, within CSW01_16925at 474.344 kb on + strand, within CSW01_16930at 474.352 kb on - strand, within CSW01_16930at 474.432 kb on - strand, within CSW01_16930at 474.442 kb on - strand, within CSW01_16930at 474.481 kb on + strand, within CSW01_16930at 474.590 kb on + strand, within CSW01_16930at 474.590 kb on + strand, within CSW01_16930at 474.649 kb on + strandat 474.714 kb on - strandat 474.714 kb on - strandat 474.790 kb on + strandat 474.897 kb on + strandat 474.897 kb on + strandat 474.897 kb on + strandat 474.897 kb on + strandat 474.905 kb on - strandat 474.929 kb on + strandat 474.964 kb on + strand, within CSW01_16935at 475.218 kb on - strand, within CSW01_16935at 475.256 kb on + strand, within CSW01_16935at 475.276 kb on + strand, within CSW01_16935at 475.285 kb on - strand, within CSW01_16935at 475.374 kb on + strand, within CSW01_16935at 475.444 kb on + strand, within CSW01_16935at 475.523 kb on + strand, within CSW01_16935at 475.565 kb on - strand, within CSW01_16935at 475.607 kb on + strand, within CSW01_16935at 475.607 kb on + strand, within CSW01_16935at 475.615 kb on - strand, within CSW01_16935

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12A
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473,122 + -0.3
473,228 - +0.6
473,288 - +0.4
473,296 + +0.5
473,296 + -0.2
473,296 + -0.7
473,301 + -0.6
473,304 - -0.1
473,304 - -0.2
473,304 - +0.9
473,373 + -0.2
473,373 + +0.2
473,381 - +0.1
473,381 - -0.7
473,526 + -0.2
473,548 + -0.9
473,627 + CSW01_16925 0.11 +0.4
473,677 + CSW01_16925 0.20 +0.7
473,695 + CSW01_16925 0.23 -0.2
473,695 + CSW01_16925 0.23 -1.2
473,705 + CSW01_16925 0.25 +0.6
473,708 - CSW01_16925 0.26 -0.3
473,716 - CSW01_16925 0.27 -0.6
473,730 - CSW01_16925 0.30 -1.6
473,781 + CSW01_16925 0.39 +0.3
473,887 - CSW01_16925 0.59 +0.4
473,910 + CSW01_16925 0.63 +0.5
473,911 - CSW01_16925 0.63 +0.4
473,918 - CSW01_16925 0.64 +0.3
473,918 - CSW01_16925 0.64 -0.1
473,918 - CSW01_16925 0.64 -1.8
473,936 - CSW01_16925 0.68 -1.0
474,002 + CSW01_16925 0.80 +0.2
474,036 - CSW01_16925 0.86 +0.2
474,047 + CSW01_16925 0.88 -0.2
474,047 + CSW01_16925 0.88 +0.9
474,344 + CSW01_16930 0.41 +0.2
474,352 - CSW01_16930 0.43 +0.7
474,432 - CSW01_16930 0.57 +0.5
474,442 - CSW01_16930 0.58 +0.4
474,481 + CSW01_16930 0.65 -0.6
474,590 + CSW01_16930 0.84 +0.1
474,590 + CSW01_16930 0.84 -0.1
474,649 + +0.4
474,714 - -0.8
474,714 - -0.6
474,790 + -0.8
474,897 + +1.2
474,897 + -1.4
474,897 + +0.2
474,897 + -1.2
474,905 - -0.2
474,929 + +1.2
474,964 + CSW01_16935 0.12 -0.4
475,218 - CSW01_16935 0.30 -2.8
475,256 + CSW01_16935 0.32 -0.8
475,276 + CSW01_16935 0.34 +1.7
475,285 - CSW01_16935 0.34 +0.7
475,374 + CSW01_16935 0.40 -0.4
475,444 + CSW01_16935 0.45 +0.5
475,523 + CSW01_16935 0.51 -0.9
475,565 - CSW01_16935 0.54 +1.1
475,607 + CSW01_16935 0.57 +0.7
475,607 + CSW01_16935 0.57 +0.9
475,615 - CSW01_16935 0.57 -0.2

Or see this region's nucleotide sequence