Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14320

Experiment: LB_Anaerobic_120MIN_ZN12A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14310 and CSW01_14315 overlap by 11 nucleotidesCSW01_14315 and CSW01_14320 are separated by 9 nucleotidesCSW01_14320 and CSW01_14325 are separated by 8 nucleotides CSW01_14310: CSW01_14310 - DUF1722 domain-containing protein, at 62,336 to 63,304 _14310 CSW01_14315: CSW01_14315 - helix-turn-helix-type transcriptional regulator, at 63,294 to 64,091 _14315 CSW01_14320: CSW01_14320 - deoxyribodipyrimidine photo-lyase, at 64,101 to 65,510 _14320 CSW01_14325: CSW01_14325 - peptidase, at 65,519 to 66,439 _14325 Position (kb) 64 65 66Strain fitness (log2 ratio) -2 -1 0 1 2 3at 63.153 kb on - strand, within CSW01_14310at 63.258 kb on + strandat 63.258 kb on + strandat 63.258 kb on + strandat 63.258 kb on + strandat 63.258 kb on + strandat 63.258 kb on + strandat 63.258 kb on + strandat 63.265 kb on + strandat 63.265 kb on + strandat 63.265 kb on + strandat 63.266 kb on - strandat 63.266 kb on - strandat 63.266 kb on - strandat 63.266 kb on - strandat 63.266 kb on - strandat 63.267 kb on - strandat 63.289 kb on + strandat 63.361 kb on + strandat 63.361 kb on + strandat 63.361 kb on + strandat 63.369 kb on - strandat 63.369 kb on - strandat 63.369 kb on - strandat 63.369 kb on - strandat 63.391 kb on - strand, within CSW01_14315at 63.391 kb on - strand, within CSW01_14315at 63.441 kb on - strand, within CSW01_14315at 63.477 kb on + strand, within CSW01_14315at 63.553 kb on + strand, within CSW01_14315at 63.558 kb on + strand, within CSW01_14315at 63.570 kb on - strand, within CSW01_14315at 63.572 kb on + strand, within CSW01_14315at 63.572 kb on + strand, within CSW01_14315at 63.608 kb on - strand, within CSW01_14315at 63.611 kb on + strand, within CSW01_14315at 63.663 kb on - strand, within CSW01_14315at 63.676 kb on + strand, within CSW01_14315at 63.749 kb on - strand, within CSW01_14315at 63.754 kb on + strand, within CSW01_14315at 63.813 kb on + strand, within CSW01_14315at 63.813 kb on + strand, within CSW01_14315at 63.836 kb on + strand, within CSW01_14315at 63.870 kb on + strand, within CSW01_14315at 63.870 kb on + strand, within CSW01_14315at 63.870 kb on + strand, within CSW01_14315at 63.878 kb on - strand, within CSW01_14315at 63.908 kb on + strand, within CSW01_14315at 63.908 kb on + strand, within CSW01_14315at 63.908 kb on + strand, within CSW01_14315at 63.908 kb on + strand, within CSW01_14315at 63.916 kb on - strand, within CSW01_14315at 63.916 kb on - strand, within CSW01_14315at 64.052 kb on + strandat 64.052 kb on + strandat 64.069 kb on + strandat 64.109 kb on + strandat 64.117 kb on - strandat 64.133 kb on - strandat 64.135 kb on + strandat 64.161 kb on + strandat 64.161 kb on + strandat 64.161 kb on + strandat 64.166 kb on + strandat 64.174 kb on - strandat 64.177 kb on - strandat 64.204 kb on + strandat 64.204 kb on + strandat 64.204 kb on + strandat 64.211 kb on - strandat 64.212 kb on - strandat 64.212 kb on - strandat 64.212 kb on - strandat 64.228 kb on + strandat 64.228 kb on + strandat 64.236 kb on - strandat 64.472 kb on - strand, within CSW01_14320at 64.473 kb on - strand, within CSW01_14320at 64.519 kb on + strand, within CSW01_14320at 64.554 kb on + strand, within CSW01_14320at 64.564 kb on - strand, within CSW01_14320at 64.576 kb on + strand, within CSW01_14320at 64.588 kb on - strand, within CSW01_14320at 64.682 kb on + strand, within CSW01_14320at 64.682 kb on + strand, within CSW01_14320at 64.690 kb on - strand, within CSW01_14320at 64.690 kb on - strand, within CSW01_14320at 64.699 kb on - strand, within CSW01_14320at 64.715 kb on + strand, within CSW01_14320at 64.715 kb on + strand, within CSW01_14320at 64.715 kb on + strand, within CSW01_14320at 64.715 kb on + strand, within CSW01_14320at 64.717 kb on + strand, within CSW01_14320at 64.723 kb on - strand, within CSW01_14320at 64.723 kb on - strand, within CSW01_14320at 64.723 kb on - strand, within CSW01_14320at 64.723 kb on - strand, within CSW01_14320at 64.774 kb on - strand, within CSW01_14320at 64.898 kb on + strand, within CSW01_14320at 64.906 kb on + strand, within CSW01_14320at 64.937 kb on - strand, within CSW01_14320at 64.939 kb on - strand, within CSW01_14320at 64.977 kb on - strand, within CSW01_14320at 65.050 kb on - strand, within CSW01_14320at 65.058 kb on + strand, within CSW01_14320at 65.136 kb on + strand, within CSW01_14320at 65.174 kb on - strand, within CSW01_14320at 65.186 kb on - strand, within CSW01_14320at 65.188 kb on + strand, within CSW01_14320at 65.191 kb on - strand, within CSW01_14320at 65.195 kb on + strand, within CSW01_14320at 65.275 kb on + strand, within CSW01_14320at 65.410 kb on - strandat 65.410 kb on - strandat 65.410 kb on - strandat 65.410 kb on - strandat 65.411 kb on - strandat 65.432 kb on + strandat 65.432 kb on + strandat 65.432 kb on + strandat 65.432 kb on + strandat 65.432 kb on + strandat 65.432 kb on + strandat 65.438 kb on - strandat 65.440 kb on - strandat 65.440 kb on - strandat 65.440 kb on - strandat 65.479 kb on + strandat 65.479 kb on + strandat 65.479 kb on + strandat 65.487 kb on - strandat 65.487 kb on - strandat 65.487 kb on - strandat 65.487 kb on - strandat 65.489 kb on + strandat 65.489 kb on + strandat 65.497 kb on - strandat 65.497 kb on - strandat 65.613 kb on - strand, within CSW01_14325at 65.696 kb on + strand, within CSW01_14325at 65.726 kb on - strand, within CSW01_14325at 65.804 kb on + strand, within CSW01_14325at 65.813 kb on - strand, within CSW01_14325at 65.819 kb on - strand, within CSW01_14325at 65.866 kb on - strand, within CSW01_14325at 65.901 kb on + strand, within CSW01_14325at 65.977 kb on + strand, within CSW01_14325at 66.060 kb on - strand, within CSW01_14325at 66.121 kb on + strand, within CSW01_14325at 66.217 kb on + strand, within CSW01_14325at 66.317 kb on + strand, within CSW01_14325at 66.416 kb on - strandat 66.418 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12A
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63,153 - CSW01_14310 0.84 -0.2
63,258 + +0.2
63,258 + -0.3
63,258 + +1.3
63,258 + +0.2
63,258 + +0.5
63,258 + +0.3
63,258 + +1.7
63,265 + -0.3
63,265 + -0.5
63,265 + -0.7
63,266 - +0.6
63,266 - +0.2
63,266 - -0.5
63,266 - +0.2
63,266 - -0.8
63,267 - +1.3
63,289 + +1.2
63,361 + -0.8
63,361 + -0.5
63,361 + +0.2
63,369 - -0.9
63,369 - -1.4
63,369 - +0.7
63,369 - +1.7
63,391 - CSW01_14315 0.12 +0.2
63,391 - CSW01_14315 0.12 -0.3
63,441 - CSW01_14315 0.18 -0.0
63,477 + CSW01_14315 0.23 +0.3
63,553 + CSW01_14315 0.32 -0.4
63,558 + CSW01_14315 0.33 +0.2
63,570 - CSW01_14315 0.35 -0.0
63,572 + CSW01_14315 0.35 +0.4
63,572 + CSW01_14315 0.35 -0.2
63,608 - CSW01_14315 0.39 -1.0
63,611 + CSW01_14315 0.40 -0.2
63,663 - CSW01_14315 0.46 -0.7
63,676 + CSW01_14315 0.48 +0.5
63,749 - CSW01_14315 0.57 +0.7
63,754 + CSW01_14315 0.58 +0.3
63,813 + CSW01_14315 0.65 -0.0
63,813 + CSW01_14315 0.65 -0.8
63,836 + CSW01_14315 0.68 +1.0
63,870 + CSW01_14315 0.72 -1.3
63,870 + CSW01_14315 0.72 +0.6
63,870 + CSW01_14315 0.72 +0.3
63,878 - CSW01_14315 0.73 -0.6
63,908 + CSW01_14315 0.77 +0.4
63,908 + CSW01_14315 0.77 -0.6
63,908 + CSW01_14315 0.77 -1.7
63,908 + CSW01_14315 0.77 +1.3
63,916 - CSW01_14315 0.78 +0.4
63,916 - CSW01_14315 0.78 +0.5
64,052 + -0.3
64,052 + +0.5
64,069 + -2.4
64,109 + +1.3
64,117 - +0.4
64,133 - +0.2
64,135 + +0.3
64,161 + +1.6
64,161 + +0.0
64,161 + -0.6
64,166 + -0.1
64,174 - +0.3
64,177 - +1.0
64,204 + +0.4
64,204 + -0.5
64,204 + +0.2
64,211 - +0.2
64,212 - -0.3
64,212 - +0.2
64,212 - -0.3
64,228 + -0.2
64,228 + -0.1
64,236 - +0.3
64,472 - CSW01_14320 0.26 +0.1
64,473 - CSW01_14320 0.26 +1.2
64,519 + CSW01_14320 0.30 -0.0
64,554 + CSW01_14320 0.32 -0.5
64,564 - CSW01_14320 0.33 +0.1
64,576 + CSW01_14320 0.34 +0.4
64,588 - CSW01_14320 0.35 -0.2
64,682 + CSW01_14320 0.41 +0.1
64,682 + CSW01_14320 0.41 -0.2
64,690 - CSW01_14320 0.42 -2.3
64,690 - CSW01_14320 0.42 +0.4
64,699 - CSW01_14320 0.42 +0.4
64,715 + CSW01_14320 0.44 -0.6
64,715 + CSW01_14320 0.44 -0.1
64,715 + CSW01_14320 0.44 +0.1
64,715 + CSW01_14320 0.44 +0.4
64,717 + CSW01_14320 0.44 +0.8
64,723 - CSW01_14320 0.44 +1.3
64,723 - CSW01_14320 0.44 +0.4
64,723 - CSW01_14320 0.44 +0.9
64,723 - CSW01_14320 0.44 -0.1
64,774 - CSW01_14320 0.48 -0.4
64,898 + CSW01_14320 0.57 +0.7
64,906 + CSW01_14320 0.57 +0.0
64,937 - CSW01_14320 0.59 +0.8
64,939 - CSW01_14320 0.59 +0.5
64,977 - CSW01_14320 0.62 +3.2
65,050 - CSW01_14320 0.67 +0.2
65,058 + CSW01_14320 0.68 -1.8
65,136 + CSW01_14320 0.73 +0.0
65,174 - CSW01_14320 0.76 +0.5
65,186 - CSW01_14320 0.77 +0.8
65,188 + CSW01_14320 0.77 -0.1
65,191 - CSW01_14320 0.77 +0.6
65,195 + CSW01_14320 0.78 -0.6
65,275 + CSW01_14320 0.83 +0.6
65,410 - -0.3
65,410 - +0.3
65,410 - -1.2
65,410 - +0.6
65,411 - +0.6
65,432 + +0.9
65,432 + +0.8
65,432 + +0.3
65,432 + -0.5
65,432 + +0.0
65,432 + -0.7
65,438 - +0.8
65,440 - -0.1
65,440 - +0.2
65,440 - -0.3
65,479 + +0.8
65,479 + +0.4
65,479 + +0.1
65,487 - +0.3
65,487 - -0.2
65,487 - -0.6
65,487 - +0.2
65,489 + -0.1
65,489 + -0.2
65,497 - +0.7
65,497 - +0.2
65,613 - CSW01_14325 0.10 -0.5
65,696 + CSW01_14325 0.19 -0.2
65,726 - CSW01_14325 0.22 -0.0
65,804 + CSW01_14325 0.31 +0.6
65,813 - CSW01_14325 0.32 -1.0
65,819 - CSW01_14325 0.33 -0.0
65,866 - CSW01_14325 0.38 -0.5
65,901 + CSW01_14325 0.41 +0.2
65,977 + CSW01_14325 0.50 -0.5
66,060 - CSW01_14325 0.59 +0.4
66,121 + CSW01_14325 0.65 +0.0
66,217 + CSW01_14325 0.76 -0.4
66,317 + CSW01_14325 0.87 +0.7
66,416 - +0.8
66,418 + -0.3

Or see this region's nucleotide sequence