Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13680

Experiment: LB_Anaerobic_120MIN_ZN12A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Anaerobic_120MIN_ZN12A
2,913,857	-		CSW01_13675	0.69	+1.3
2,913,912	+		CSW01_13675	0.72	+0.8
2,913,935	-		CSW01_13675	0.73	-0.7
2,913,935	-		CSW01_13675	0.73	+0.5
2,913,935	-		CSW01_13675	0.73	-1.5
2,914,090	+		CSW01_13675	0.80	+0.8
2,914,112	-		CSW01_13675	0.81	+0.7
2,914,156	-		CSW01_13675	0.83	-1.7
2,914,177	+		CSW01_13675	0.84	+1.9
2,914,182	+		CSW01_13675	0.84	+0.7
2,914,182	+		CSW01_13675	0.84	-0.6
2,914,190	+		CSW01_13675	0.85	+0.4
2,914,190	-		CSW01_13675	0.85	+0.4
2,914,201	+		CSW01_13675	0.85	+0.3
2,914,236	-		CSW01_13675	0.87	+0.3
2,914,238	+		CSW01_13675	0.87	-0.3
2,914,246	-		CSW01_13675	0.87	+0.7
2,914,277	+		CSW01_13675	0.89	+1.1
2,914,310	-				+0.7
2,914,329	+				+0.1
2,914,329	+				+0.4
2,914,393	+				+1.2
2,914,400	+				-2.2
2,914,400	+				-2.0
2,914,400	+				+0.2
2,914,406	-				-2.0
2,914,426	+				-0.2
2,914,486	+				-0.0
2,914,494	-				+0.3
2,914,494	-				+0.1
2,914,508	+				-0.0
2,914,521	-				-0.7
2,914,526	-				+0.3
2,914,529	+				+0.1
2,914,537	-				-0.0
2,914,644	+				+0.0
2,914,671	+				-0.2
2,914,676	+				+0.3
2,914,679	-				-1.4
2,914,726	+				-0.2
2,914,726	+				-2.3
2,914,726	+				-0.1
2,914,726	+				+0.4
2,914,734	-				-0.1
2,914,740	-				-0.7
2,914,805	-				-0.4
2,914,822	-				-1.5
2,914,827	-				+0.8
2,914,827	-				-0.1
2,914,827	-				-0.6
2,914,996	+		CSW01_13680	0.17	-0.6
2,915,003	+		CSW01_13680	0.18	+1.4
2,915,004	-		CSW01_13680	0.18	-1.4
2,915,004	-		CSW01_13680	0.18	-0.7
2,915,051	+		CSW01_13680	0.20	-0.6
2,915,051	+		CSW01_13680	0.20	-0.2
2,915,071	-		CSW01_13680	0.21	-1.5
2,915,085	+		CSW01_13680	0.22	-0.4
2,915,093	+		CSW01_13680	0.22	-0.7
2,915,093	+		CSW01_13680	0.22	-0.2
2,915,108	+		CSW01_13680	0.23	-1.1
2,915,129	-		CSW01_13680	0.24	-0.1
2,915,131	+		CSW01_13680	0.24	-3.0
2,915,145	-		CSW01_13680	0.25	-0.8
2,915,164	+		CSW01_13680	0.26	-0.3
2,915,164	+		CSW01_13680	0.26	-1.1
2,915,164	+		CSW01_13680	0.26	-0.9
2,915,164	+		CSW01_13680	0.26	-2.7
2,915,164	+		CSW01_13680	0.26	-2.0
2,915,164	+		CSW01_13680	0.26	-1.3
2,915,164	+		CSW01_13680	0.26	+0.6
2,915,172	-		CSW01_13680	0.26	+0.7
2,915,172	-		CSW01_13680	0.26	-1.0
2,915,172	-		CSW01_13680	0.26	+0.2
2,915,172	-		CSW01_13680	0.26	+0.3
2,915,172	-		CSW01_13680	0.26	+0.4
2,915,179	-		CSW01_13680	0.26	+0.2
2,915,205	-		CSW01_13680	0.28	-0.7
2,915,207	-		CSW01_13680	0.28	-1.6
2,915,208	-		CSW01_13680	0.28	-0.7
2,915,215	-		CSW01_13680	0.28	-0.6
2,915,221	-		CSW01_13680	0.28	-0.3
2,915,272	-		CSW01_13680	0.31	-1.3
2,915,303	+		CSW01_13680	0.32	-0.9
2,915,387	-		CSW01_13680	0.36	+0.0
2,915,404	+		CSW01_13680	0.37	-0.7
2,915,410	-		CSW01_13680	0.37	-1.0
2,915,412	-		CSW01_13680	0.37	-0.3
2,915,451	-		CSW01_13680	0.39	+1.3
2,915,509	+		CSW01_13680	0.42	+0.3
2,915,509	+		CSW01_13680	0.42	-0.3
2,915,509	+		CSW01_13680	0.42	+0.8
2,915,509	+		CSW01_13680	0.42	-1.3
2,915,509	+		CSW01_13680	0.42	-0.7
2,915,517	-		CSW01_13680	0.43	-1.4
2,915,517	-		CSW01_13680	0.43	+0.1
2,915,517	-		CSW01_13680	0.43	+0.8
2,915,517	-		CSW01_13680	0.43	-3.5
2,915,517	-		CSW01_13680	0.43	-1.7
2,915,530	+		CSW01_13680	0.43	-0.3
2,915,538	-		CSW01_13680	0.44	-0.2
2,915,558	-		CSW01_13680	0.44	+1.4
2,915,590	+		CSW01_13680	0.46	-0.3
2,915,590	+		CSW01_13680	0.46	+0.1
2,915,590	+		CSW01_13680	0.46	+1.9
2,915,648	+		CSW01_13680	0.49	+0.0
2,915,648	+		CSW01_13680	0.49	-0.6
2,915,656	+		CSW01_13680	0.49	+1.6
2,915,656	-		CSW01_13680	0.49	+2.4
2,915,656	-		CSW01_13680	0.49	-0.5
2,915,656	-		CSW01_13680	0.49	+0.0
2,915,661	-		CSW01_13680	0.49	-0.5
2,915,691	+		CSW01_13680	0.51	+0.9
2,915,699	-		CSW01_13680	0.51	+0.1
2,915,699	-		CSW01_13680	0.51	-0.1
2,915,699	-		CSW01_13680	0.51	-1.9
2,915,711	+		CSW01_13680	0.52	+2.1
2,915,762	+		CSW01_13680	0.54	+1.5
2,915,797	+		CSW01_13680	0.56	-0.3
2,915,803	+		CSW01_13680	0.56	-1.3
2,915,837	+		CSW01_13680	0.58	-0.6
2,915,837	+		CSW01_13680	0.58	+3.3
2,915,845	-		CSW01_13680	0.58	+0.1
2,915,849	+		CSW01_13680	0.58	-0.4
2,915,849	+		CSW01_13680	0.58	+0.9
2,915,849	+		CSW01_13680	0.58	-0.2
2,915,849	+		CSW01_13680	0.58	+0.3
2,915,849	+		CSW01_13680	0.58	-0.5
2,915,849	+		CSW01_13680	0.58	+0.1
2,915,849	+		CSW01_13680	0.58	-1.0
2,915,850	-		CSW01_13680	0.59	-1.6
2,915,857	-		CSW01_13680	0.59	+1.1
2,915,857	-		CSW01_13680	0.59	+0.3
2,915,857	-		CSW01_13680	0.59	-0.3
2,915,857	-		CSW01_13680	0.59	-1.2
2,915,857	-		CSW01_13680	0.59	-0.4
2,915,857	-		CSW01_13680	0.59	-0.7
2,915,963	+		CSW01_13680	0.64	-3.3
2,915,998	-		CSW01_13680	0.66	+0.4
2,916,092	-		CSW01_13680	0.70	-0.4
2,916,093	+		CSW01_13680	0.70	-0.3
2,916,165	-		CSW01_13680	0.74	-0.5
2,916,196	+		CSW01_13680	0.75	-0.7
2,916,304	-		CSW01_13680	0.80	-2.9
2,916,362	-		CSW01_13680	0.83	-0.3
2,916,362	-		CSW01_13680	0.83	-1.8
2,916,377	+		CSW01_13680	0.84	+0.3
2,916,377	+		CSW01_13680	0.84	-2.3
2,916,387	+		CSW01_13680	0.84	+0.4
2,916,393	-		CSW01_13680	0.85	-0.5
2,916,394	+		CSW01_13680	0.85	-0.7
2,916,402	-		CSW01_13680	0.85	-0.3
2,916,405	+		CSW01_13680	0.85	-0.4
2,916,412	-		CSW01_13680	0.86	-2.0
2,916,413	-		CSW01_13680	0.86	-1.1
2,916,425	+		CSW01_13680	0.86	-0.9
2,916,435	+		CSW01_13680	0.87	+1.0
2,916,443	-		CSW01_13680	0.87	-0.5
2,916,544	+				-0.3
2,916,608	-				+0.3
2,916,608	-				-0.6
2,916,608	-				-0.7
2,916,610	+				-0.5
2,916,653	+				+0.9
2,916,677	+				+0.0
2,916,677	+				+0.2
2,916,677	+				+0.1
2,916,677	+				-0.2
2,916,677	+				-0.7
2,916,685	-				-0.6
2,916,685	-				-0.4
2,916,834	+				+0.1
2,916,950	+				-0.1
2,916,972	-				+0.6
2,917,008	-				-0.8
2,917,010	+				-0.8
2,917,018	-				-0.3
2,917,029	+				+0.3
2,917,078	+				+0.3
2,917,086	-				+0.0
2,917,091	-				+0.0
2,917,201	+		CSW01_13685	0.13	-1.2
2,917,223	+		CSW01_13685	0.14	-0.5
2,917,223	+		CSW01_13685	0.14	-0.3
2,917,288	+		CSW01_13685	0.19	-0.5
2,917,316	-		CSW01_13685	0.21	+0.7
2,917,392	+		CSW01_13685	0.26	-0.8
2,917,392	+		CSW01_13685	0.26	-0.2
2,917,474	+		CSW01_13685	0.31	+0.0
2,917,492	-		CSW01_13685	0.33	+0.0
2,917,495	+		CSW01_13685	0.33	+0.4
2,917,497	+		CSW01_13685	0.33	+0.3
2,917,515	+		CSW01_13685	0.34	-0.8
2,917,515	+		CSW01_13685	0.34	+0.3
2,917,531	+		CSW01_13685	0.35	+0.1
2,917,531	+		CSW01_13685	0.35	-0.3
2,917,531	+		CSW01_13685	0.35	+0.3
2,917,531	+		CSW01_13685	0.35	+0.1
2,917,531	+		CSW01_13685	0.35	+0.2
2,917,531	+		CSW01_13685	0.35	+0.5
2,917,539	-		CSW01_13685	0.36	-0.1
2,917,539	-		CSW01_13685	0.36	-0.5
2,917,539	-		CSW01_13685	0.36	-0.4
2,917,539	-		CSW01_13685	0.36	-0.1
2,917,539	-		CSW01_13685	0.36	-0.3
2,917,597	+		CSW01_13685	0.40	+0.3
2,917,625	+		CSW01_13685	0.42	+1.9
2,917,625	+		CSW01_13685	0.42	+1.2
2,917,653	+		CSW01_13685	0.44	+1.1
2,917,653	-		CSW01_13685	0.44	-0.6
2,917,655	+		CSW01_13685	0.44	-0.8
2,917,658	+		CSW01_13685	0.44	+0.6
2,917,663	-		CSW01_13685	0.45	-1.5
2,917,667	+		CSW01_13685	0.45	+0.5