Experiment: LB_Anaerobic_120MIN_ZN12A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_12735 and CSW01_12740 are separated by 80 nucleotides CSW01_12740 and CSW01_12745 are separated by 21 nucleotides CSW01_12745 and CSW01_12750 are separated by 7 nucleotides CSW01_12750 and CSW01_12755 overlap by 8 nucleotides CSW01_12755 and CSW01_12760 overlap by 4 nucleotides
CSW01_12735: CSW01_12735 - RidA family protein, at 2,732,532 to 2,732,921
_12735
CSW01_12740: CSW01_12740 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 2,733,002 to 2,733,787
_12740
CSW01_12745: CSW01_12745 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 2,733,809 to 2,735,068
_12745
CSW01_12750: CSW01_12750 - BolA family transcriptional regulator, at 2,735,076 to 2,735,330
_12750
CSW01_12755: CSW01_12755 - anti-sigma B factor antagonist, at 2,735,323 to 2,735,652
_12755
CSW01_12760: CSW01_12760 - phospholipid-binding protein MlaC, at 2,735,649 to 2,736,290
_12760
Position (kb)
2733
2734
2735
2736 Strain fitness (log2 ratio)
-2
-1
0
1 at 2732.830 kb on - strand, within CSW01_12735 at 2732.852 kb on - strand, within CSW01_12735 at 2735.125 kb on - strand, within CSW01_12750 at 2735.216 kb on - strand, within CSW01_12750 at 2735.293 kb on - strand, within CSW01_12750 at 2735.428 kb on - strand, within CSW01_12755 at 2735.614 kb on - strand, within CSW01_12755 at 2735.628 kb on + strand at 2735.636 kb on - strand at 2735.636 kb on - strand at 2735.708 kb on - strand at 2735.756 kb on - strand, within CSW01_12760 at 2735.773 kb on - strand, within CSW01_12760 at 2735.810 kb on + strand, within CSW01_12760 at 2735.946 kb on + strand, within CSW01_12760 at 2735.957 kb on - strand, within CSW01_12760 at 2736.025 kb on + strand, within CSW01_12760 at 2736.033 kb on - strand, within CSW01_12760 at 2736.047 kb on + strand, within CSW01_12760
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12A remove 2,732,830 - CSW01_12735 0.76 +0.6 2,732,852 - CSW01_12735 0.82 -0.8 2,735,125 - CSW01_12750 0.19 -0.3 2,735,216 - CSW01_12750 0.55 -1.7 2,735,293 - CSW01_12750 0.85 -0.2 2,735,428 - CSW01_12755 0.32 +0.5 2,735,614 - CSW01_12755 0.88 +0.5 2,735,628 + -0.2 2,735,636 - -0.8 2,735,636 - -0.1 2,735,708 - +0.4 2,735,756 - CSW01_12760 0.17 -0.3 2,735,773 - CSW01_12760 0.19 -1.9 2,735,810 + CSW01_12760 0.25 +0.6 2,735,946 + CSW01_12760 0.46 -1.1 2,735,957 - CSW01_12760 0.48 -0.0 2,736,025 + CSW01_12760 0.59 +0.6 2,736,033 - CSW01_12760 0.60 -2.4 2,736,047 + CSW01_12760 0.62 +0.5
Or see this region's nucleotide sequence