Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12745

Experiment: LB_Anaerobic_120MIN_ZN12A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_12735 and CSW01_12740 are separated by 80 nucleotidesCSW01_12740 and CSW01_12745 are separated by 21 nucleotidesCSW01_12745 and CSW01_12750 are separated by 7 nucleotidesCSW01_12750 and CSW01_12755 overlap by 8 nucleotidesCSW01_12755 and CSW01_12760 overlap by 4 nucleotides CSW01_12735: CSW01_12735 - RidA family protein, at 2,732,532 to 2,732,921 _12735 CSW01_12740: CSW01_12740 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 2,733,002 to 2,733,787 _12740 CSW01_12745: CSW01_12745 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 2,733,809 to 2,735,068 _12745 CSW01_12750: CSW01_12750 - BolA family transcriptional regulator, at 2,735,076 to 2,735,330 _12750 CSW01_12755: CSW01_12755 - anti-sigma B factor antagonist, at 2,735,323 to 2,735,652 _12755 CSW01_12760: CSW01_12760 - phospholipid-binding protein MlaC, at 2,735,649 to 2,736,290 _12760 Position (kb) 2733 2734 2735 2736Strain fitness (log2 ratio) -2 -1 0 1at 2732.830 kb on - strand, within CSW01_12735at 2732.852 kb on - strand, within CSW01_12735at 2735.125 kb on - strand, within CSW01_12750at 2735.216 kb on - strand, within CSW01_12750at 2735.293 kb on - strand, within CSW01_12750at 2735.428 kb on - strand, within CSW01_12755at 2735.614 kb on - strand, within CSW01_12755at 2735.628 kb on + strandat 2735.636 kb on - strandat 2735.636 kb on - strandat 2735.708 kb on - strandat 2735.756 kb on - strand, within CSW01_12760at 2735.773 kb on - strand, within CSW01_12760at 2735.810 kb on + strand, within CSW01_12760at 2735.946 kb on + strand, within CSW01_12760at 2735.957 kb on - strand, within CSW01_12760at 2736.025 kb on + strand, within CSW01_12760at 2736.033 kb on - strand, within CSW01_12760at 2736.047 kb on + strand, within CSW01_12760

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12A
remove
2,732,830 - CSW01_12735 0.76 +0.6
2,732,852 - CSW01_12735 0.82 -0.8
2,735,125 - CSW01_12750 0.19 -0.3
2,735,216 - CSW01_12750 0.55 -1.7
2,735,293 - CSW01_12750 0.85 -0.2
2,735,428 - CSW01_12755 0.32 +0.5
2,735,614 - CSW01_12755 0.88 +0.5
2,735,628 + -0.2
2,735,636 - -0.8
2,735,636 - -0.1
2,735,708 - +0.4
2,735,756 - CSW01_12760 0.17 -0.3
2,735,773 - CSW01_12760 0.19 -1.9
2,735,810 + CSW01_12760 0.25 +0.6
2,735,946 + CSW01_12760 0.46 -1.1
2,735,957 - CSW01_12760 0.48 -0.0
2,736,025 + CSW01_12760 0.59 +0.6
2,736,033 - CSW01_12760 0.60 -2.4
2,736,047 + CSW01_12760 0.62 +0.5

Or see this region's nucleotide sequence