Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12345

Experiment: LB_Anaerobic_120MIN_ZN12A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Anaerobic_120MIN_ZN12A
2,643,887	-		CSW01_12340	0.35	+0.3
2,643,927	-		CSW01_12340	0.38	+0.3
2,643,963	-		CSW01_12340	0.40	-0.7
2,644,055	-		CSW01_12340	0.46	+0.3
2,644,114	-		CSW01_12340	0.51	+0.3
2,644,116	-		CSW01_12340	0.51	+1.3
2,644,258	+		CSW01_12340	0.61	-0.7
2,644,389	+		CSW01_12340	0.70	+0.3
2,644,398	-		CSW01_12340	0.70	+0.3
2,644,601	-		CSW01_12340	0.85	-0.3
2,644,696	-				+0.3
2,644,696	-				+0.3
2,644,757	-				-1.3
2,644,802	-				+0.3
2,644,858	-				-0.6
2,644,858	-				-0.5
2,644,880	+				+0.1
2,644,885	+				+0.4
2,644,944	+				-0.2
2,645,007	-				-0.9
2,645,016	+				+0.2
2,645,017	+				-0.1
2,645,017	+				-0.2
2,645,041	+				-0.7
2,645,095	+				+0.5
2,645,111	+				+0.3
2,645,257	-		CSW01_12345	0.13	-1.0
2,645,268	-		CSW01_12345	0.13	-0.6
2,645,270	+		CSW01_12345	0.14	-0.5
2,645,272	+		CSW01_12345	0.14	+0.4
2,645,335	-		CSW01_12345	0.16	-0.3
2,645,363	-		CSW01_12345	0.17	+0.2
2,645,369	-		CSW01_12345	0.17	+1.0
2,645,376	+		CSW01_12345	0.17	-0.2
2,645,384	-		CSW01_12345	0.18	+0.3
2,645,441	+		CSW01_12345	0.20	+0.3
2,645,446	+		CSW01_12345	0.20	-0.7
2,645,449	-		CSW01_12345	0.20	-0.4
2,645,449	-		CSW01_12345	0.20	+0.8
2,645,449	-		CSW01_12345	0.20	+0.2
2,645,456	+		CSW01_12345	0.20	+0.3
2,645,464	-		CSW01_12345	0.20	-1.9
2,645,468	-		CSW01_12345	0.21	+0.6
2,645,468	-		CSW01_12345	0.21	+0.4
2,645,475	-		CSW01_12345	0.21	-0.2
2,645,522	+		CSW01_12345	0.22	+0.3
2,645,522	+		CSW01_12345	0.22	-1.5
2,645,530	-		CSW01_12345	0.23	-0.9
2,645,640	+		CSW01_12345	0.27	-0.3
2,645,648	-		CSW01_12345	0.27	+0.1
2,645,658	+		CSW01_12345	0.27	+0.1
2,645,681	-		CSW01_12345	0.28	+0.3
2,645,690	+		CSW01_12345	0.28	-0.1
2,645,690	+		CSW01_12345	0.28	+0.5
2,645,698	-		CSW01_12345	0.29	+0.9
2,645,698	-		CSW01_12345	0.29	-0.5
2,645,700	+		CSW01_12345	0.29	+0.3
2,645,730	+		CSW01_12345	0.30	+0.1
2,645,795	-		CSW01_12345	0.32	+1.1
2,645,813	+		CSW01_12345	0.33	+0.7
2,645,845	+		CSW01_12345	0.34	+0.4
2,645,951	+		CSW01_12345	0.37	+0.5
2,645,951	+		CSW01_12345	0.37	-1.2
2,645,964	-		CSW01_12345	0.38	+0.3
2,645,964	-		CSW01_12345	0.38	-0.5
2,645,964	-		CSW01_12345	0.38	-0.2
2,645,974	+		CSW01_12345	0.38	+1.5
2,645,974	+		CSW01_12345	0.38	-0.0
2,645,996	+		CSW01_12345	0.39	+0.5
2,646,040	+		CSW01_12345	0.41	+0.0
2,646,040	+		CSW01_12345	0.41	-0.1
2,646,048	-		CSW01_12345	0.41	-0.2
2,646,068	-		CSW01_12345	0.42	-0.0
2,646,089	+		CSW01_12345	0.42	-0.8
2,646,089	+		CSW01_12345	0.42	+0.7
2,646,089	+		CSW01_12345	0.42	-0.5
2,646,097	-		CSW01_12345	0.43	-0.5
2,646,097	-		CSW01_12345	0.43	+0.3
2,646,097	-		CSW01_12345	0.43	-0.1
2,646,097	-		CSW01_12345	0.43	+0.3
2,646,110	+		CSW01_12345	0.43	-1.0
2,646,126	-		CSW01_12345	0.44	-1.2
2,646,168	+		CSW01_12345	0.45	+0.1
2,646,178	+		CSW01_12345	0.45	-1.0
2,646,212	+		CSW01_12345	0.47	+0.2
2,646,227	+		CSW01_12345	0.47	+0.6
2,646,235	-		CSW01_12345	0.47	-0.6
2,646,253	+		CSW01_12345	0.48	-0.0
2,646,299	+		CSW01_12345	0.50	-0.5
2,646,299	+		CSW01_12345	0.50	-0.1
2,646,307	-		CSW01_12345	0.50	+0.6
2,646,307	-		CSW01_12345	0.50	+0.1
2,646,357	-		CSW01_12345	0.52	+0.5
2,646,360	-		CSW01_12345	0.52	+0.9
2,646,386	+		CSW01_12345	0.53	-2.0
2,646,392	-		CSW01_12345	0.53	-0.0
2,646,439	+		CSW01_12345	0.55	-0.3
2,646,443	+		CSW01_12345	0.55	+1.3
2,646,545	-		CSW01_12345	0.58	+1.4
2,646,689	+		CSW01_12345	0.63	-0.8
2,646,689	+		CSW01_12345	0.63	+0.3
2,646,689	+		CSW01_12345	0.63	-1.6
2,646,689	+		CSW01_12345	0.63	+1.9
2,646,689	+		CSW01_12345	0.63	+0.4
2,646,689	+		CSW01_12345	0.63	-0.5
2,646,697	-		CSW01_12345	0.64	-0.7
2,646,697	-		CSW01_12345	0.64	+0.6
2,646,697	-		CSW01_12345	0.64	-0.0
2,646,697	-		CSW01_12345	0.64	-0.3
2,646,697	-		CSW01_12345	0.64	-0.4
2,646,697	-		CSW01_12345	0.64	+0.9
2,646,800	-		CSW01_12345	0.67	-2.3
2,646,844	+		CSW01_12345	0.69	-0.1
2,646,851	+		CSW01_12345	0.69	-0.1
2,646,859	-		CSW01_12345	0.69	-0.7
2,646,896	+		CSW01_12345	0.71	-0.6
2,646,904	-		CSW01_12345	0.71	+0.3
2,646,904	-		CSW01_12345	0.71	-1.0
2,646,904	-		CSW01_12345	0.71	+0.0
2,646,904	-		CSW01_12345	0.71	+0.3
2,646,904	-		CSW01_12345	0.71	+0.7
2,646,969	+		CSW01_12345	0.73	-0.9
2,646,974	+		CSW01_12345	0.73	-0.3
2,646,974	+		CSW01_12345	0.73	-0.6
2,646,997	-		CSW01_12345	0.74	+0.5
2,647,109	+		CSW01_12345	0.78	+0.9
2,647,109	+		CSW01_12345	0.78	-0.2
2,647,117	-		CSW01_12345	0.78	-0.6
2,647,204	+		CSW01_12345	0.81	-0.2
2,647,218	-		CSW01_12345	0.82	-0.1
2,647,231	+		CSW01_12345	0.82	-0.2
2,647,239	-		CSW01_12345	0.83	+1.3
2,647,269	+		CSW01_12345	0.84	-3.4
2,647,322	+		CSW01_12345	0.86	+1.3
2,647,346	-		CSW01_12345	0.86	-0.4
2,647,355	+		CSW01_12345	0.87	+0.2
2,647,364	+		CSW01_12345	0.87	+1.3
2,647,379	+		CSW01_12345	0.88	+0.7
2,647,453	-				+0.3
2,647,453	-				-0.4
2,647,484	+				+0.1
2,647,601	+				-1.7
2,647,601	+				-0.2
2,647,601	+				+0.4
2,647,601	+				-0.3
2,647,609	-				-0.4
2,647,609	-				+0.2
2,647,609	-				-0.4
2,647,609	-				+0.0
2,647,609	-				+0.4
2,647,609	-				-0.9
2,647,642	-				-0.5
2,647,659	+				+0.3
2,647,659	+				+0.5
2,647,667	-				-0.6
2,647,667	-				-0.2
2,647,667	-				+0.3
2,647,667	-				+0.7
2,647,667	-				+0.6
2,647,811	-				+0.5
2,647,894	+				-0.7
2,647,910	+				-0.2
2,647,923	+				+0.4
2,647,926	-				-0.4
2,647,928	+				-2.5
2,647,944	+				-0.7
2,647,959	-				+0.1
2,648,064	-		CSW01_12350	0.16	-0.5
2,648,108	+		CSW01_12350	0.20	-0.0
2,648,108	+		CSW01_12350	0.20	-0.3
2,648,108	+		CSW01_12350	0.20	-0.2
2,648,108	+		CSW01_12350	0.20	-1.0
2,648,115	-		CSW01_12350	0.20	-0.0
2,648,116	-		CSW01_12350	0.20	+0.1
2,648,116	-		CSW01_12350	0.20	+0.5
2,648,116	-		CSW01_12350	0.20	-0.3
2,648,116	-		CSW01_12350	0.20	-1.1
2,648,116	-		CSW01_12350	0.20	+0.2
2,648,120	-		CSW01_12350	0.20	-0.8
2,648,199	+		CSW01_12350	0.26	+0.7
2,648,236	-		CSW01_12350	0.29	+0.0
2,648,301	-		CSW01_12350	0.34	-1.5
2,648,357	+		CSW01_12350	0.39	+0.1
2,648,362	-		CSW01_12350	0.39	-0.3
2,648,365	-		CSW01_12350	0.39	-1.4
2,648,375	-		CSW01_12350	0.40	-0.1
2,648,384	+		CSW01_12350	0.41	+0.7
2,648,405	+		CSW01_12350	0.42	+0.0
2,648,405	+		CSW01_12350	0.42	+0.5
2,648,405	+		CSW01_12350	0.42	+0.4
2,648,405	+		CSW01_12350	0.42	+0.1
2,648,421	-		CSW01_12350	0.44	-0.4
2,648,507	+		CSW01_12350	0.50	-0.1
2,648,538	+		CSW01_12350	0.53	-0.2
2,648,538	+		CSW01_12350	0.53	+0.2
2,648,546	-		CSW01_12350	0.53	-0.1
2,648,631	+		CSW01_12350	0.60	-0.4
2,648,639	-		CSW01_12350	0.60	+0.1
2,648,650	-		CSW01_12350	0.61	+0.5
2,648,705	-		CSW01_12350	0.65	+1.1