Experiment: LB_Anaerobic_120MIN_ZN12A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_09290 and CSW01_09295 are separated by 37 nucleotides CSW01_09295 and CSW01_09300 overlap by 16 nucleotides CSW01_09300 and CSW01_09305 are separated by 0 nucleotides CSW01_09305 and CSW01_09310 are separated by 23 nucleotides
CSW01_09290: CSW01_09290 - ATP-dependent DNA helicase DinG, at 1,993,034 to 1,995,109
_09290
CSW01_09295: CSW01_09295 - hypothetical protein, at 1,995,147 to 1,995,926
_09295
CSW01_09300: CSW01_09300 - prepilin peptidase, at 1,995,911 to 1,996,474
_09300
CSW01_09305: CSW01_09305 - primosomal protein, at 1,996,475 to 1,996,687
_09305
CSW01_09310: CSW01_09310 - methyl-accepting chemotaxis protein, at 1,996,711 to 1,998,831
_09310
Position (kb) 1995
1996 Strain fitness (log2 ratio) -1
0
1
2 at 1994.274 kb on + strand, within CSW01_09290 at 1994.274 kb on + strand, within CSW01_09290 at 1994.282 kb on - strand, within CSW01_09290 at 1994.316 kb on + strand, within CSW01_09290 at 1994.808 kb on + strand, within CSW01_09290 at 1994.808 kb on + strand, within CSW01_09290 at 1994.808 kb on + strand, within CSW01_09290 at 1994.990 kb on - strand at 1995.098 kb on + strand at 1995.165 kb on - strand at 1995.165 kb on - strand at 1995.399 kb on + strand, within CSW01_09295 at 1995.453 kb on - strand, within CSW01_09295 at 1995.505 kb on - strand, within CSW01_09295 at 1995.528 kb on + strand, within CSW01_09295 at 1995.541 kb on + strand, within CSW01_09295 at 1995.541 kb on + strand, within CSW01_09295 at 1995.556 kb on - strand, within CSW01_09295 at 1995.561 kb on - strand, within CSW01_09295 at 1995.617 kb on - strand, within CSW01_09295 at 1995.635 kb on + strand, within CSW01_09295 at 1995.649 kb on + strand, within CSW01_09295 at 1995.685 kb on + strand, within CSW01_09295 at 1995.739 kb on + strand, within CSW01_09295 at 1995.747 kb on - strand, within CSW01_09295 at 1995.752 kb on + strand, within CSW01_09295 at 1995.820 kb on - strand, within CSW01_09295 at 1995.830 kb on - strand, within CSW01_09295 at 1995.854 kb on - strand at 1995.854 kb on - strand at 1996.015 kb on - strand, within CSW01_09300 at 1996.031 kb on + strand, within CSW01_09300 at 1996.054 kb on + strand, within CSW01_09300 at 1996.062 kb on - strand, within CSW01_09300 at 1996.097 kb on + strand, within CSW01_09300 at 1996.105 kb on - strand, within CSW01_09300 at 1996.147 kb on + strand, within CSW01_09300 at 1996.155 kb on - strand, within CSW01_09300 at 1996.182 kb on - strand, within CSW01_09300 at 1996.184 kb on - strand, within CSW01_09300 at 1996.313 kb on + strand, within CSW01_09300 at 1996.382 kb on + strand, within CSW01_09300 at 1996.390 kb on - strand, within CSW01_09300 at 1996.514 kb on - strand, within CSW01_09305 at 1996.672 kb on + strand at 1996.738 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12A remove 1,994,274 + CSW01_09290 0.60 -0.9 1,994,274 + CSW01_09290 0.60 -1.7 1,994,282 - CSW01_09290 0.60 -0.4 1,994,316 + CSW01_09290 0.62 +0.4 1,994,808 + CSW01_09290 0.85 +0.3 1,994,808 + CSW01_09290 0.85 -0.4 1,994,808 + CSW01_09290 0.85 +1.0 1,994,990 - -0.9 1,995,098 + +1.7 1,995,165 - +2.1 1,995,165 - +0.8 1,995,399 + CSW01_09295 0.32 +1.2 1,995,453 - CSW01_09295 0.39 -0.5 1,995,505 - CSW01_09295 0.46 -1.0 1,995,528 + CSW01_09295 0.49 +0.7 1,995,541 + CSW01_09295 0.51 +1.4 1,995,541 + CSW01_09295 0.51 +0.7 1,995,556 - CSW01_09295 0.52 -0.0 1,995,561 - CSW01_09295 0.53 +1.1 1,995,617 - CSW01_09295 0.60 +0.1 1,995,635 + CSW01_09295 0.63 +1.1 1,995,649 + CSW01_09295 0.64 +1.0 1,995,685 + CSW01_09295 0.69 -0.1 1,995,739 + CSW01_09295 0.76 -0.7 1,995,747 - CSW01_09295 0.77 -0.4 1,995,752 + CSW01_09295 0.78 +1.4 1,995,820 - CSW01_09295 0.86 +2.2 1,995,830 - CSW01_09295 0.88 +0.9 1,995,854 - -0.3 1,995,854 - -0.5 1,996,015 - CSW01_09300 0.18 -0.2 1,996,031 + CSW01_09300 0.21 +0.4 1,996,054 + CSW01_09300 0.25 -0.2 1,996,062 - CSW01_09300 0.27 +0.6 1,996,097 + CSW01_09300 0.33 -0.9 1,996,105 - CSW01_09300 0.34 +1.2 1,996,147 + CSW01_09300 0.42 +0.8 1,996,155 - CSW01_09300 0.43 -1.5 1,996,182 - CSW01_09300 0.48 -0.7 1,996,184 - CSW01_09300 0.48 +0.4 1,996,313 + CSW01_09300 0.71 -0.7 1,996,382 + CSW01_09300 0.84 -0.8 1,996,390 - CSW01_09300 0.85 +0.5 1,996,514 - CSW01_09305 0.18 +0.1 1,996,672 + +0.2 1,996,738 + -0.7
Or see this region's nucleotide sequence