Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09235

Experiment: LB_Anaerobic_120MIN_ZN12A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_09230 and CSW01_09235 are separated by 17 nucleotidesCSW01_09235 and CSW01_09240 are separated by 419 nucleotides CSW01_09230: CSW01_09230 - cytochrome d ubiquinol oxidase subunit II, at 1,980,459 to 1,981,595 _09230 CSW01_09235: CSW01_09235 - cytochrome d terminal oxidase subunit 1, at 1,981,613 to 1,983,238 _09235 CSW01_09240: CSW01_09240 - Holliday junction branch migration DNA helicase RuvB, at 1,983,658 to 1,984,662 _09240 Position (kb) 1981 1982 1983 1984Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1983.400 kb on - strandat 1983.400 kb on - strandat 1983.402 kb on + strandat 1983.437 kb on + strandat 1983.470 kb on + strandat 1983.500 kb on - strandat 1983.870 kb on + strand, within CSW01_09240at 1983.871 kb on + strand, within CSW01_09240at 1983.934 kb on - strand, within CSW01_09240at 1983.952 kb on - strand, within CSW01_09240at 1984.023 kb on + strand, within CSW01_09240at 1984.031 kb on - strand, within CSW01_09240at 1984.072 kb on + strand, within CSW01_09240at 1984.080 kb on - strand, within CSW01_09240at 1984.146 kb on + strand, within CSW01_09240at 1984.148 kb on + strand, within CSW01_09240at 1984.154 kb on - strand, within CSW01_09240at 1984.154 kb on - strand, within CSW01_09240at 1984.156 kb on - strand, within CSW01_09240at 1984.175 kb on - strand, within CSW01_09240

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12A
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1,983,400 - +0.1
1,983,400 - -0.1
1,983,402 + +0.3
1,983,437 + +1.2
1,983,470 + +0.7
1,983,500 - -0.0
1,983,870 + CSW01_09240 0.21 +0.2
1,983,871 + CSW01_09240 0.21 -3.7
1,983,934 - CSW01_09240 0.27 -2.3
1,983,952 - CSW01_09240 0.29 -1.3
1,984,023 + CSW01_09240 0.36 -0.9
1,984,031 - CSW01_09240 0.37 -1.6
1,984,072 + CSW01_09240 0.41 -1.5
1,984,080 - CSW01_09240 0.42 -0.3
1,984,146 + CSW01_09240 0.49 +0.8
1,984,148 + CSW01_09240 0.49 +0.8
1,984,154 - CSW01_09240 0.49 -1.1
1,984,154 - CSW01_09240 0.49 +1.6
1,984,156 - CSW01_09240 0.50 +1.8
1,984,175 - CSW01_09240 0.51 -2.1

Or see this region's nucleotide sequence