Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_06705

Experiment: LB_Anaerobic_120MIN_ZN12A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Anaerobic_120MIN_ZN12A
1,410,993	+		CSW01_06700	0.47	+0.2
1,411,001	-		CSW01_06700	0.47	+0.0
1,411,001	-		CSW01_06700	0.47	+0.0
1,411,031	+		CSW01_06700	0.50	-0.2
1,411,032	-		CSW01_06700	0.50	-0.4
1,411,126	+		CSW01_06700	0.60	-0.0
1,411,202	-		CSW01_06700	0.67	-0.1
1,411,224	-		CSW01_06700	0.69	-0.8
1,411,224	-		CSW01_06700	0.69	-0.3
1,411,400	+		CSW01_06700	0.87	-1.4
1,411,400	+		CSW01_06700	0.87	+0.5
1,411,408	-		CSW01_06700	0.87	-0.1
1,411,443	+				+0.5
1,411,451	-				-0.8
1,411,457	-				-0.5
1,411,475	-				+1.2
1,411,481	+				+0.1
1,411,483	-				+0.0
1,411,486	+				+1.1
1,411,528	+				+0.1
1,411,536	-				-0.8
1,411,536	-				+0.2
1,411,595	-				-0.2
1,411,691	+				-0.2
1,411,698	+				+0.6
1,411,722	-				-0.2
1,411,839	+				-0.5
1,411,839	+				+0.3
1,411,847	-				+1.2
1,411,847	-				+0.5
1,411,847	-				+0.7
1,412,000	+				-0.1
1,412,000	+				+0.5
1,412,171	+		CSW01_06705	0.36	-0.8
1,412,171	+		CSW01_06705	0.36	+1.0
1,412,171	+		CSW01_06705	0.36	+0.9
1,412,179	-		CSW01_06705	0.37	-0.1
1,412,225	+		CSW01_06705	0.44	+0.5
1,412,237	+		CSW01_06705	0.46	+0.2
1,412,237	+		CSW01_06705	0.46	-0.3
1,412,237	+		CSW01_06705	0.46	-0.0
1,412,237	+		CSW01_06705	0.46	+0.6
1,412,243	+		CSW01_06705	0.47	-0.2
1,412,245	-		CSW01_06705	0.47	+0.2
1,412,275	+		CSW01_06705	0.52	-0.9
1,412,275	+		CSW01_06705	0.52	-0.2
1,412,278	-		CSW01_06705	0.52	+0.4
1,412,283	-		CSW01_06705	0.53	-0.0
1,412,283	-		CSW01_06705	0.53	+0.2
1,412,283	-		CSW01_06705	0.53	+0.3
1,412,288	-		CSW01_06705	0.54	-0.1
1,412,288	-		CSW01_06705	0.54	+0.9
1,412,288	-		CSW01_06705	0.54	-0.2
1,412,307	+		CSW01_06705	0.57	+1.0
1,412,315	-		CSW01_06705	0.58	-0.0
1,412,320	-		CSW01_06705	0.59	-0.0
1,412,340	+		CSW01_06705	0.62	+0.7
1,412,344	-		CSW01_06705	0.63	-0.1
1,412,349	-		CSW01_06705	0.63	+0.8
1,412,376	+		CSW01_06705	0.68	-0.5
1,412,376	+		CSW01_06705	0.68	+0.0
1,412,376	+		CSW01_06705	0.68	-1.2
1,412,384	-		CSW01_06705	0.69	+0.5
1,412,408	+		CSW01_06705	0.73	+0.1
1,412,412	-		CSW01_06705	0.73	-0.8
1,412,416	-		CSW01_06705	0.74	+0.2
1,412,423	-		CSW01_06705	0.75	+1.3
1,412,443	+		CSW01_06705	0.78	+0.4
1,412,443	+		CSW01_06705	0.78	+0.1
1,412,450	-		CSW01_06705	0.79	+0.5
1,412,494	-		CSW01_06705	0.86	+0.2
1,412,527	+				-0.1
1,412,527	+				-1.2
1,412,671	+				+0.3
1,412,673	-				-0.4
1,412,681	+				-0.1
1,412,689	-				-0.1
1,412,694	+				+1.0
1,412,702	+				-0.9
1,412,702	+				-3.1
1,412,702	+				-0.7
1,412,702	+				-0.3
1,412,710	-				-2.8
1,412,710	-				-0.4
1,412,710	-				+0.0
1,412,710	-				-0.1
1,412,712	-				-0.5
1,412,712	-				-0.4
1,412,746	+				-0.5
1,412,755	-				-0.4
1,412,768	-				+0.4
1,412,770	+				+0.4
1,412,814	-				-0.0
1,412,828	+				-0.1
1,412,828	+				-1.0
1,412,828	+				-0.0
1,412,828	+				+0.5
1,412,828	+				+0.4
1,412,828	+				-0.0
1,412,828	+				-0.3
1,412,828	+				+1.1
1,412,828	+				-0.1
1,412,828	+				-0.3
1,412,828	+				+0.8
1,412,828	+				-0.4
1,412,828	+				-0.2
1,412,828	+				+0.3
1,412,828	+				-0.1
1,412,828	+				-0.1
1,412,828	+				+0.1
1,412,828	+				+0.8
1,412,828	+				+0.7
1,412,828	+				+0.8
1,412,829	-				+0.6
1,412,833	+				+0.1
1,412,836	-				-0.9
1,412,836	-				-1.2
1,412,836	-				-0.8
1,412,836	-				-1.2
1,412,836	-				-0.0
1,412,836	-				+0.4
1,412,836	-				+1.3
1,412,836	-				-0.1
1,412,836	-				+0.5
1,412,836	-				+1.3
1,412,836	-				+0.2
1,412,836	-				-0.6
1,412,838	+				+0.1
1,412,838	+				-0.1
1,412,838	+				-0.8
1,412,838	+				-0.8
1,412,838	+				+0.1
1,412,838	+				+0.9
1,412,838	+				-0.1
1,412,838	+				+0.1
1,412,838	+				-0.1
1,412,838	+				-0.0
1,412,838	+				-0.3
1,412,838	+				-0.3
1,412,838	+				-0.1
1,412,838	+				+0.5
1,412,838	+				+0.1
1,412,838	+				+0.1
1,412,846	-				+0.8
1,412,846	-				-0.3
1,412,846	-				-0.6
1,412,846	-				-0.9
1,412,846	-				+0.3
1,412,846	-				+0.8
1,412,846	-				-0.3
1,412,846	-				-0.7
1,412,846	-				+0.3
1,412,846	-				-0.1
1,412,846	-				-0.8
1,412,846	-				-0.8
1,412,846	-				+0.2
1,412,848	-				-0.8
1,412,853	+				+0.7
1,412,853	+				-0.2
1,412,855	+				+1.9
1,412,855	+				+0.2
1,412,855	+				+0.6
1,412,855	+				+0.2
1,412,855	+				+0.1
1,412,855	+				+0.0
1,412,855	+				+0.3
1,412,855	+				+0.2
1,412,861	-				+1.0
1,412,861	-				+0.2
1,412,861	-				-0.2
1,412,863	-				+0.9
1,412,863	-				-1.1
1,412,863	-				-0.9
1,412,865	+				-0.1
1,412,907	-				-0.5
1,412,919	-				+0.2
1,412,944	+				+0.3
1,412,944	+				-0.2
1,412,952	-				-1.7
1,412,980	+				-0.7
1,412,980	+				-0.8
1,412,982	+				-0.3
1,412,982	+				-0.4
1,412,982	+				-0.4
1,412,990	-		CSW01_06710	0.11	+0.3
1,412,990	-		CSW01_06710	0.11	+0.1
1,412,994	+		CSW01_06710	0.11	-0.2
1,412,994	+		CSW01_06710	0.11	-0.3
1,413,002	-		CSW01_06710	0.12	+0.5
1,413,002	-		CSW01_06710	0.12	+0.5
1,413,015	+		CSW01_06710	0.14	-1.3
1,413,015	+		CSW01_06710	0.14	+0.1
1,413,015	+		CSW01_06710	0.14	-0.1
1,413,015	+		CSW01_06710	0.14	+0.2
1,413,023	-		CSW01_06710	0.14	+0.6
1,413,023	-		CSW01_06710	0.14	-0.3
1,413,023	-		CSW01_06710	0.14	+0.2
1,413,023	-		CSW01_06710	0.14	-0.6
1,413,023	-		CSW01_06710	0.14	-0.7
1,413,104	-		CSW01_06710	0.24	+0.7
1,413,153	-		CSW01_06710	0.30	+0.8
1,413,162	+		CSW01_06710	0.31	+2.4
1,413,162	+		CSW01_06710	0.31	+1.0
1,413,162	+		CSW01_06710	0.31	+0.8
1,413,170	-		CSW01_06710	0.32	-1.1
1,413,172	+		CSW01_06710	0.32	-0.8
1,413,172	+		CSW01_06710	0.32	+0.4
1,413,172	+		CSW01_06710	0.32	-0.2
1,413,172	+		CSW01_06710	0.32	+0.8
1,413,172	+		CSW01_06710	0.32	+0.6
1,413,172	+		CSW01_06710	0.32	-1.1
1,413,179	-		CSW01_06710	0.33	+0.8
1,413,180	-		CSW01_06710	0.33	-3.0
1,413,180	-		CSW01_06710	0.33	-0.6
1,413,185	+		CSW01_06710	0.34	+0.2
1,413,193	-		CSW01_06710	0.35	-0.8
1,413,200	-		CSW01_06710	0.36	-0.0
1,413,230	+		CSW01_06710	0.39	-0.2
1,413,238	-		CSW01_06710	0.40	+1.6
1,413,244	-		CSW01_06710	0.41	-1.1
1,413,244	-		CSW01_06710	0.41	+0.7
1,413,244	-		CSW01_06710	0.41	-1.6
1,413,244	-		CSW01_06710	0.41	+0.1
1,413,244	-		CSW01_06710	0.41	-0.6
1,413,244	-		CSW01_06710	0.41	+0.0
1,413,249	-		CSW01_06710	0.42	-0.6
1,413,331	+		CSW01_06710	0.52	+0.6
1,413,339	-		CSW01_06710	0.53	+0.9
1,413,339	-		CSW01_06710	0.53	+1.9
1,413,349	-		CSW01_06710	0.54	+0.6
1,413,393	+		CSW01_06710	0.59	-0.1
1,413,396	-		CSW01_06710	0.60	-0.4
1,413,401	-		CSW01_06710	0.60	+0.1
1,413,401	-		CSW01_06710	0.60	-0.3
1,413,406	+		CSW01_06710	0.61	-0.4
1,413,406	+		CSW01_06710	0.61	+0.0
1,413,486	+		CSW01_06710	0.70	-0.5
1,413,486	+		CSW01_06710	0.70	-0.7
1,413,494	-		CSW01_06710	0.71	+0.4
1,413,494	-		CSW01_06710	0.71	+0.4
1,413,518	+		CSW01_06710	0.74	-2.9
1,413,553	+		CSW01_06710	0.79	+0.1
1,413,572	+		CSW01_06710	0.81	-0.4