Experiment: LB_Anaerobic_120MIN_ZN12A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04380 and CSW01_04385 overlap by 4 nucleotides CSW01_04385 and CSW01_04390 are separated by 77 nucleotides CSW01_04390 and CSW01_04395 are separated by 107 nucleotides
CSW01_04380: CSW01_04380 - ubiquinone-binding protein, at 914,134 to 914,568
_04380
CSW01_04385: CSW01_04385 - RnfH family protein, at 914,565 to 914,876
_04385
CSW01_04390: CSW01_04390 - outer membrane protein assembly factor BamE, at 914,954 to 915,364
_04390
CSW01_04395: CSW01_04395 - DNA repair protein RecN, at 915,472 to 917,136
_04395
Position (kb) 914
915
916 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 914.014 kb on - strand at 914.035 kb on - strand at 914.039 kb on + strand at 914.039 kb on + strand at 914.039 kb on + strand at 914.039 kb on + strand at 914.039 kb on + strand at 914.039 kb on + strand at 914.039 kb on + strand at 914.039 kb on + strand at 914.039 kb on + strand at 914.039 kb on + strand at 914.041 kb on + strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.047 kb on - strand at 914.062 kb on + strand at 914.070 kb on + strand at 914.070 kb on - strand at 914.080 kb on - strand at 914.118 kb on + strand at 914.126 kb on - strand at 914.553 kb on + strand at 914.553 kb on + strand at 914.852 kb on - strand at 914.852 kb on - strand at 914.857 kb on - strand at 914.918 kb on + strand at 914.957 kb on + strand at 915.003 kb on + strand, within CSW01_04390 at 915.087 kb on + strand, within CSW01_04390 at 915.095 kb on - strand, within CSW01_04390 at 915.233 kb on + strand, within CSW01_04390 at 915.373 kb on - strand at 915.395 kb on + strand at 915.395 kb on + strand at 915.487 kb on - strand at 915.538 kb on - strand at 915.678 kb on + strand, within CSW01_04395 at 915.716 kb on - strand, within CSW01_04395 at 915.740 kb on + strand, within CSW01_04395 at 915.750 kb on + strand, within CSW01_04395 at 915.750 kb on + strand, within CSW01_04395 at 915.797 kb on + strand, within CSW01_04395 at 915.857 kb on - strand, within CSW01_04395 at 915.859 kb on + strand, within CSW01_04395 at 915.867 kb on - strand, within CSW01_04395 at 915.873 kb on + strand, within CSW01_04395 at 915.922 kb on + strand, within CSW01_04395 at 915.928 kb on - strand, within CSW01_04395 at 915.937 kb on + strand, within CSW01_04395 at 915.937 kb on + strand, within CSW01_04395 at 915.945 kb on - strand, within CSW01_04395 at 915.945 kb on - strand, within CSW01_04395 at 915.998 kb on - strand, within CSW01_04395 at 916.055 kb on - strand, within CSW01_04395 at 916.076 kb on - strand, within CSW01_04395 at 916.142 kb on - strand, within CSW01_04395 at 916.194 kb on - strand, within CSW01_04395 at 916.223 kb on - strand, within CSW01_04395 at 916.230 kb on + strand, within CSW01_04395 at 916.230 kb on + strand, within CSW01_04395 at 916.233 kb on - strand, within CSW01_04395 at 916.287 kb on + strand, within CSW01_04395 at 916.295 kb on - strand, within CSW01_04395 at 916.295 kb on - strand, within CSW01_04395 at 916.295 kb on - strand, within CSW01_04395 at 916.312 kb on + strand, within CSW01_04395 at 916.337 kb on - strand, within CSW01_04395 at 916.337 kb on - strand, within CSW01_04395 at 916.337 kb on - strand, within CSW01_04395 at 916.339 kb on - strand, within CSW01_04395
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12A remove 914,014 - -0.7 914,035 - -0.1 914,039 + +0.7 914,039 + +0.6 914,039 + -0.4 914,039 + -0.2 914,039 + +1.7 914,039 + -0.2 914,039 + +0.2 914,039 + +0.3 914,039 + -0.3 914,039 + -0.7 914,041 + +0.2 914,047 - -0.4 914,047 - +0.2 914,047 - -0.1 914,047 - +0.3 914,047 - +0.3 914,047 - +0.4 914,047 - +0.1 914,047 - +0.0 914,047 - +0.5 914,047 - -0.1 914,047 - -0.4 914,047 - -0.6 914,047 - -0.0 914,062 + -0.1 914,070 + -0.5 914,070 - +1.3 914,080 - +0.3 914,118 + +0.4 914,126 - +0.2 914,553 + +0.3 914,553 + -0.2 914,852 - +0.7 914,852 - -0.3 914,857 - +0.1 914,918 + +0.9 914,957 + +0.4 915,003 + CSW01_04390 0.12 +0.2 915,087 + CSW01_04390 0.32 -0.6 915,095 - CSW01_04390 0.34 -2.0 915,233 + CSW01_04390 0.68 -2.8 915,373 - +1.0 915,395 + +0.3 915,395 + +0.9 915,487 - -1.2 915,538 - -1.0 915,678 + CSW01_04395 0.12 -0.5 915,716 - CSW01_04395 0.15 -0.5 915,740 + CSW01_04395 0.16 -0.8 915,750 + CSW01_04395 0.17 -0.8 915,750 + CSW01_04395 0.17 +0.6 915,797 + CSW01_04395 0.20 -0.3 915,857 - CSW01_04395 0.23 +0.2 915,859 + CSW01_04395 0.23 +1.4 915,867 - CSW01_04395 0.24 -0.5 915,873 + CSW01_04395 0.24 -0.3 915,922 + CSW01_04395 0.27 -1.3 915,928 - CSW01_04395 0.27 -0.2 915,937 + CSW01_04395 0.28 -0.1 915,937 + CSW01_04395 0.28 +1.1 915,945 - CSW01_04395 0.28 -0.8 915,945 - CSW01_04395 0.28 -2.8 915,998 - CSW01_04395 0.32 +0.8 916,055 - CSW01_04395 0.35 +1.7 916,076 - CSW01_04395 0.36 -2.3 916,142 - CSW01_04395 0.40 -0.3 916,194 - CSW01_04395 0.43 +3.8 916,223 - CSW01_04395 0.45 -0.1 916,230 + CSW01_04395 0.46 +0.6 916,230 + CSW01_04395 0.46 -1.4 916,233 - CSW01_04395 0.46 +0.3 916,287 + CSW01_04395 0.49 +1.2 916,295 - CSW01_04395 0.49 -0.1 916,295 - CSW01_04395 0.49 -0.5 916,295 - CSW01_04395 0.49 -0.1 916,312 + CSW01_04395 0.50 +1.5 916,337 - CSW01_04395 0.52 -2.5 916,337 - CSW01_04395 0.52 +0.0 916,337 - CSW01_04395 0.52 -0.3 916,339 - CSW01_04395 0.52 +0.4
Or see this region's nucleotide sequence