Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04315

Experiment: LB_Anaerobic_120MIN_ZN12A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04310 and CSW01_04315 are separated by 206 nucleotidesCSW01_04315 and CSW01_04320 overlap by 1 nucleotidesCSW01_04320 and CSW01_04325 are separated by 6 nucleotides CSW01_04310: CSW01_04310 - pilus assembly protein, at 897,412 to 898,428 _04310 CSW01_04315: CSW01_04315 - TCP pilus virulence regulatory protein, at 898,635 to 899,465 _04315 CSW01_04320: CSW01_04320 - type 4 prepilin-like proteins leader peptide-processing enzyme, at 899,465 to 900,226 _04320 CSW01_04325: CSW01_04325 - methyl-accepting chemotaxis protein, at 900,233 to 902,113 _04325 Position (kb) 898 899 900Strain fitness (log2 ratio) -2 -1 0 1at 897.640 kb on - strand, within CSW01_04310at 897.653 kb on + strand, within CSW01_04310at 897.670 kb on + strand, within CSW01_04310at 897.678 kb on - strand, within CSW01_04310at 897.680 kb on - strand, within CSW01_04310at 897.682 kb on + strand, within CSW01_04310at 897.687 kb on + strand, within CSW01_04310at 897.717 kb on + strand, within CSW01_04310at 897.717 kb on + strand, within CSW01_04310at 897.717 kb on + strand, within CSW01_04310at 897.725 kb on - strand, within CSW01_04310at 897.725 kb on - strand, within CSW01_04310at 897.725 kb on - strand, within CSW01_04310at 897.725 kb on - strand, within CSW01_04310at 897.725 kb on - strand, within CSW01_04310at 897.725 kb on - strand, within CSW01_04310at 897.725 kb on - strand, within CSW01_04310at 897.725 kb on - strand, within CSW01_04310at 897.772 kb on + strand, within CSW01_04310at 897.796 kb on + strand, within CSW01_04310at 897.807 kb on + strand, within CSW01_04310at 897.833 kb on - strand, within CSW01_04310at 897.860 kb on - strand, within CSW01_04310at 897.873 kb on + strand, within CSW01_04310at 897.873 kb on + strand, within CSW01_04310at 897.873 kb on + strand, within CSW01_04310at 897.873 kb on + strand, within CSW01_04310at 897.873 kb on + strand, within CSW01_04310at 897.881 kb on - strand, within CSW01_04310at 897.881 kb on - strand, within CSW01_04310at 897.881 kb on - strand, within CSW01_04310at 897.881 kb on - strand, within CSW01_04310at 897.912 kb on + strand, within CSW01_04310at 897.936 kb on - strand, within CSW01_04310at 897.945 kb on - strand, within CSW01_04310at 897.945 kb on - strand, within CSW01_04310at 897.950 kb on - strand, within CSW01_04310at 897.989 kb on - strand, within CSW01_04310at 897.996 kb on - strand, within CSW01_04310at 898.070 kb on + strand, within CSW01_04310at 898.099 kb on + strand, within CSW01_04310at 898.099 kb on + strand, within CSW01_04310at 898.107 kb on - strand, within CSW01_04310at 898.107 kb on - strand, within CSW01_04310at 898.120 kb on + strand, within CSW01_04310at 898.125 kb on + strand, within CSW01_04310at 898.135 kb on + strand, within CSW01_04310at 898.139 kb on + strand, within CSW01_04310at 898.143 kb on - strand, within CSW01_04310at 898.143 kb on - strand, within CSW01_04310at 898.143 kb on - strand, within CSW01_04310at 898.146 kb on + strand, within CSW01_04310at 898.146 kb on + strand, within CSW01_04310at 898.154 kb on - strand, within CSW01_04310at 898.160 kb on + strand, within CSW01_04310at 898.161 kb on + strand, within CSW01_04310at 898.161 kb on + strand, within CSW01_04310at 898.161 kb on + strand, within CSW01_04310at 898.168 kb on - strand, within CSW01_04310at 898.169 kb on - strand, within CSW01_04310at 898.169 kb on - strand, within CSW01_04310at 898.169 kb on - strand, within CSW01_04310at 898.196 kb on - strand, within CSW01_04310at 898.206 kb on + strand, within CSW01_04310at 898.206 kb on + strand, within CSW01_04310at 898.211 kb on + strand, within CSW01_04310at 898.235 kb on + strand, within CSW01_04310at 898.238 kb on - strand, within CSW01_04310at 898.238 kb on - strand, within CSW01_04310at 898.249 kb on + strand, within CSW01_04310at 898.253 kb on - strand, within CSW01_04310at 898.253 kb on - strand, within CSW01_04310at 898.253 kb on - strand, within CSW01_04310at 898.257 kb on - strand, within CSW01_04310at 898.272 kb on + strand, within CSW01_04310at 898.280 kb on - strand, within CSW01_04310at 898.280 kb on - strand, within CSW01_04310at 898.306 kb on + strand, within CSW01_04310at 898.307 kb on - strand, within CSW01_04310at 898.307 kb on - strand, within CSW01_04310at 898.314 kb on - strand, within CSW01_04310at 898.314 kb on - strand, within CSW01_04310at 898.314 kb on - strand, within CSW01_04310at 898.314 kb on - strand, within CSW01_04310at 898.314 kb on - strand, within CSW01_04310at 898.314 kb on - strand, within CSW01_04310at 898.314 kb on - strand, within CSW01_04310at 898.375 kb on + strandat 898.385 kb on + strandat 898.385 kb on + strandat 898.393 kb on + strandat 898.401 kb on - strandat 898.403 kb on - strandat 898.445 kb on + strandat 898.533 kb on + strandat 898.553 kb on - strandat 898.561 kb on - strandat 898.581 kb on + strandat 898.598 kb on - strandat 898.618 kb on + strandat 898.901 kb on + strand, within CSW01_04315at 898.909 kb on - strand, within CSW01_04315at 899.005 kb on + strand, within CSW01_04315at 899.200 kb on - strand, within CSW01_04315at 899.202 kb on + strand, within CSW01_04315at 899.212 kb on - strand, within CSW01_04315at 899.247 kb on + strand, within CSW01_04315at 899.360 kb on + strand, within CSW01_04315at 899.364 kb on + strand, within CSW01_04315at 899.372 kb on - strand, within CSW01_04315at 899.372 kb on - strand, within CSW01_04315at 899.372 kb on - strand, within CSW01_04315at 899.372 kb on - strand, within CSW01_04315at 899.679 kb on + strand, within CSW01_04320at 899.680 kb on + strand, within CSW01_04320at 899.680 kb on + strand, within CSW01_04320at 899.680 kb on + strand, within CSW01_04320at 899.680 kb on + strand, within CSW01_04320at 899.687 kb on - strand, within CSW01_04320at 899.688 kb on - strand, within CSW01_04320at 899.688 kb on - strand, within CSW01_04320at 899.688 kb on - strand, within CSW01_04320at 899.688 kb on - strand, within CSW01_04320at 899.688 kb on - strand, within CSW01_04320at 899.688 kb on - strand, within CSW01_04320at 899.688 kb on - strand, within CSW01_04320at 899.688 kb on - strand, within CSW01_04320at 899.688 kb on - strand, within CSW01_04320at 899.778 kb on + strand, within CSW01_04320at 899.810 kb on - strand, within CSW01_04320at 899.925 kb on - strand, within CSW01_04320at 899.927 kb on + strand, within CSW01_04320at 899.963 kb on + strand, within CSW01_04320at 899.967 kb on + strand, within CSW01_04320at 899.967 kb on + strand, within CSW01_04320at 899.971 kb on - strand, within CSW01_04320at 899.971 kb on - strand, within CSW01_04320at 899.971 kb on - strand, within CSW01_04320at 900.024 kb on - strand, within CSW01_04320at 900.029 kb on - strand, within CSW01_04320at 900.037 kb on + strand, within CSW01_04320at 900.037 kb on + strand, within CSW01_04320at 900.037 kb on + strand, within CSW01_04320at 900.045 kb on - strand, within CSW01_04320at 900.045 kb on - strand, within CSW01_04320at 900.045 kb on - strand, within CSW01_04320at 900.045 kb on - strand, within CSW01_04320at 900.045 kb on - strand, within CSW01_04320at 900.045 kb on - strand, within CSW01_04320at 900.045 kb on - strand, within CSW01_04320at 900.045 kb on - strand, within CSW01_04320at 900.066 kb on + strand, within CSW01_04320at 900.136 kb on + strand, within CSW01_04320at 900.144 kb on - strand, within CSW01_04320at 900.144 kb on - strand, within CSW01_04320at 900.144 kb on - strand, within CSW01_04320at 900.173 kb on - strandat 900.314 kb on + strandat 900.322 kb on - strandat 900.373 kb on - strandat 900.406 kb on + strandat 900.406 kb on + strandat 900.406 kb on + strandat 900.406 kb on + strandat 900.406 kb on + strandat 900.406 kb on + strandat 900.406 kb on + strandat 900.406 kb on + strandat 900.413 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.414 kb on - strandat 900.419 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12A
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897,640 - CSW01_04310 0.22 +0.5
897,653 + CSW01_04310 0.24 +1.3
897,670 + CSW01_04310 0.25 +0.0
897,678 - CSW01_04310 0.26 -0.1
897,680 - CSW01_04310 0.26 -0.9
897,682 + CSW01_04310 0.27 +0.3
897,687 + CSW01_04310 0.27 -0.3
897,717 + CSW01_04310 0.30 -0.8
897,717 + CSW01_04310 0.30 +0.0
897,717 + CSW01_04310 0.30 -2.0
897,725 - CSW01_04310 0.31 +0.2
897,725 - CSW01_04310 0.31 +0.7
897,725 - CSW01_04310 0.31 -1.5
897,725 - CSW01_04310 0.31 -0.6
897,725 - CSW01_04310 0.31 +0.2
897,725 - CSW01_04310 0.31 +1.0
897,725 - CSW01_04310 0.31 +0.3
897,725 - CSW01_04310 0.31 +0.3
897,772 + CSW01_04310 0.35 +0.6
897,796 + CSW01_04310 0.38 +1.0
897,807 + CSW01_04310 0.39 -0.3
897,833 - CSW01_04310 0.41 +0.1
897,860 - CSW01_04310 0.44 +0.6
897,873 + CSW01_04310 0.45 -0.4
897,873 + CSW01_04310 0.45 +0.1
897,873 + CSW01_04310 0.45 +0.5
897,873 + CSW01_04310 0.45 -0.0
897,873 + CSW01_04310 0.45 +0.3
897,881 - CSW01_04310 0.46 +0.2
897,881 - CSW01_04310 0.46 -1.1
897,881 - CSW01_04310 0.46 -0.8
897,881 - CSW01_04310 0.46 +0.4
897,912 + CSW01_04310 0.49 -0.1
897,936 - CSW01_04310 0.52 -0.1
897,945 - CSW01_04310 0.52 +0.3
897,945 - CSW01_04310 0.52 -0.4
897,950 - CSW01_04310 0.53 +0.3
897,989 - CSW01_04310 0.57 -1.6
897,996 - CSW01_04310 0.57 -0.0
898,070 + CSW01_04310 0.65 +0.2
898,099 + CSW01_04310 0.68 +0.1
898,099 + CSW01_04310 0.68 +0.1
898,107 - CSW01_04310 0.68 +0.2
898,107 - CSW01_04310 0.68 +0.9
898,120 + CSW01_04310 0.70 +0.1
898,125 + CSW01_04310 0.70 +0.6
898,135 + CSW01_04310 0.71 +0.3
898,139 + CSW01_04310 0.71 +0.3
898,143 - CSW01_04310 0.72 -0.1
898,143 - CSW01_04310 0.72 +1.4
898,143 - CSW01_04310 0.72 +0.4
898,146 + CSW01_04310 0.72 -0.5
898,146 + CSW01_04310 0.72 -0.7
898,154 - CSW01_04310 0.73 -0.1
898,160 + CSW01_04310 0.74 -0.8
898,161 + CSW01_04310 0.74 -0.2
898,161 + CSW01_04310 0.74 +0.0
898,161 + CSW01_04310 0.74 -0.4
898,168 - CSW01_04310 0.74 -0.7
898,169 - CSW01_04310 0.74 -0.3
898,169 - CSW01_04310 0.74 +0.4
898,169 - CSW01_04310 0.74 -0.5
898,196 - CSW01_04310 0.77 -1.2
898,206 + CSW01_04310 0.78 -0.3
898,206 + CSW01_04310 0.78 +1.2
898,211 + CSW01_04310 0.79 -1.2
898,235 + CSW01_04310 0.81 -0.5
898,238 - CSW01_04310 0.81 +0.6
898,238 - CSW01_04310 0.81 +0.1
898,249 + CSW01_04310 0.82 +0.6
898,253 - CSW01_04310 0.83 +0.0
898,253 - CSW01_04310 0.83 +0.5
898,253 - CSW01_04310 0.83 +0.6
898,257 - CSW01_04310 0.83 +0.8
898,272 + CSW01_04310 0.85 +0.2
898,280 - CSW01_04310 0.85 +0.4
898,280 - CSW01_04310 0.85 +0.5
898,306 + CSW01_04310 0.88 -0.3
898,307 - CSW01_04310 0.88 -0.4
898,307 - CSW01_04310 0.88 +0.1
898,314 - CSW01_04310 0.89 -0.6
898,314 - CSW01_04310 0.89 -0.1
898,314 - CSW01_04310 0.89 +1.0
898,314 - CSW01_04310 0.89 +1.1
898,314 - CSW01_04310 0.89 -0.3
898,314 - CSW01_04310 0.89 -0.5
898,314 - CSW01_04310 0.89 -1.3
898,375 + +0.9
898,385 + -0.1
898,385 + +0.1
898,393 + -0.4
898,401 - +0.8
898,403 - -0.3
898,445 + +0.7
898,533 + -0.1
898,553 - +0.2
898,561 - +0.2
898,581 + +1.2
898,598 - +0.7
898,618 + -0.4
898,901 + CSW01_04315 0.32 +0.3
898,909 - CSW01_04315 0.33 -1.5
899,005 + CSW01_04315 0.45 -0.5
899,200 - CSW01_04315 0.68 -2.2
899,202 + CSW01_04315 0.68 -0.1
899,212 - CSW01_04315 0.69 -0.9
899,247 + CSW01_04315 0.74 +0.5
899,360 + CSW01_04315 0.87 -1.6
899,364 + CSW01_04315 0.88 -0.6
899,372 - CSW01_04315 0.89 -1.2
899,372 - CSW01_04315 0.89 -0.1
899,372 - CSW01_04315 0.89 +0.2
899,372 - CSW01_04315 0.89 -1.6
899,679 + CSW01_04320 0.28 -0.6
899,680 + CSW01_04320 0.28 +0.0
899,680 + CSW01_04320 0.28 +0.6
899,680 + CSW01_04320 0.28 -0.3
899,680 + CSW01_04320 0.28 -0.6
899,687 - CSW01_04320 0.29 -2.6
899,688 - CSW01_04320 0.29 -0.7
899,688 - CSW01_04320 0.29 +0.2
899,688 - CSW01_04320 0.29 -0.5
899,688 - CSW01_04320 0.29 -1.2
899,688 - CSW01_04320 0.29 -0.4
899,688 - CSW01_04320 0.29 -0.8
899,688 - CSW01_04320 0.29 -0.0
899,688 - CSW01_04320 0.29 +0.6
899,688 - CSW01_04320 0.29 +0.3
899,778 + CSW01_04320 0.41 +0.1
899,810 - CSW01_04320 0.45 -0.7
899,925 - CSW01_04320 0.60 +1.1
899,927 + CSW01_04320 0.61 +0.1
899,963 + CSW01_04320 0.65 +0.2
899,967 + CSW01_04320 0.66 -0.9
899,967 + CSW01_04320 0.66 +0.1
899,971 - CSW01_04320 0.66 -0.1
899,971 - CSW01_04320 0.66 +0.6
899,971 - CSW01_04320 0.66 +0.2
900,024 - CSW01_04320 0.73 +0.3
900,029 - CSW01_04320 0.74 +0.6
900,037 + CSW01_04320 0.75 -0.2
900,037 + CSW01_04320 0.75 +0.2
900,037 + CSW01_04320 0.75 +0.3
900,045 - CSW01_04320 0.76 -0.4
900,045 - CSW01_04320 0.76 +1.2
900,045 - CSW01_04320 0.76 -1.0
900,045 - CSW01_04320 0.76 +0.5
900,045 - CSW01_04320 0.76 +0.0
900,045 - CSW01_04320 0.76 -0.6
900,045 - CSW01_04320 0.76 -2.7
900,045 - CSW01_04320 0.76 -0.4
900,066 + CSW01_04320 0.79 -0.0
900,136 + CSW01_04320 0.88 +1.0
900,144 - CSW01_04320 0.89 +1.0
900,144 - CSW01_04320 0.89 +0.3
900,144 - CSW01_04320 0.89 -1.2
900,173 - -0.3
900,314 + +0.2
900,322 - -0.1
900,373 - -1.7
900,406 + -1.0
900,406 + +0.7
900,406 + -0.0
900,406 + -0.2
900,406 + +0.5
900,406 + -0.3
900,406 + -0.2
900,406 + -0.2
900,413 - -0.6
900,414 - +0.7
900,414 - -0.7
900,414 - +0.3
900,414 - +0.2
900,414 - +0.4
900,414 - +0.2
900,414 - -0.1
900,414 - +1.1
900,414 - -0.3
900,414 - -0.2
900,414 - +1.1
900,419 - +0.4

Or see this region's nucleotide sequence