Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04205

Experiment: LB_Anaerobic_120MIN_ZN12A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04195 and CSW01_04200 are separated by 427 nucleotidesCSW01_04200 and CSW01_04205 overlap by 16 nucleotidesCSW01_04205 and CSW01_04210 are separated by 111 nucleotidesCSW01_04210 and CSW01_04215 are separated by 301 nucleotides CSW01_04195: CSW01_04195 - class I SAM-dependent methyltransferase, at 868,550 to 869,128 _04195 CSW01_04200: CSW01_04200 - XRE family transcriptional regulator, at 869,556 to 870,035 _04200 CSW01_04205: CSW01_04205 - type II toxin-antitoxin system HipA family toxin, at 870,020 to 871,390 _04205 CSW01_04210: CSW01_04210 - hypothetical protein, at 871,502 to 871,684 _04210 CSW01_04215: CSW01_04215 - IS481 family transposase ISVch1, at 871,986 to 872,963 _04215 Position (kb) 870 871 872Strain fitness (log2 ratio) -2 -1 0 1at 869.022 kb on - strand, within CSW01_04195at 869.029 kb on - strand, within CSW01_04195at 869.039 kb on - strand, within CSW01_04195at 869.045 kb on - strand, within CSW01_04195at 869.045 kb on - strand, within CSW01_04195at 869.069 kb on + strand, within CSW01_04195at 869.160 kb on + strandat 869.160 kb on + strandat 869.166 kb on + strandat 869.203 kb on + strandat 869.203 kb on + strandat 869.205 kb on + strandat 869.210 kb on - strandat 869.275 kb on + strandat 869.283 kb on - strandat 869.337 kb on - strandat 870.121 kb on + strandat 870.121 kb on + strandat 870.121 kb on + strandat 870.129 kb on - strandat 870.130 kb on - strandat 870.197 kb on + strand, within CSW01_04205at 870.200 kb on - strand, within CSW01_04205at 870.243 kb on - strand, within CSW01_04205at 870.246 kb on - strand, within CSW01_04205at 870.326 kb on - strand, within CSW01_04205at 870.327 kb on - strand, within CSW01_04205at 870.328 kb on - strand, within CSW01_04205at 870.330 kb on + strand, within CSW01_04205at 870.364 kb on + strand, within CSW01_04205at 870.440 kb on + strand, within CSW01_04205at 870.448 kb on - strand, within CSW01_04205at 870.448 kb on - strand, within CSW01_04205at 870.544 kb on - strand, within CSW01_04205at 870.627 kb on - strand, within CSW01_04205at 870.629 kb on + strand, within CSW01_04205at 870.710 kb on - strand, within CSW01_04205at 870.758 kb on + strand, within CSW01_04205at 870.873 kb on - strand, within CSW01_04205at 870.873 kb on - strand, within CSW01_04205at 870.889 kb on + strand, within CSW01_04205at 870.899 kb on + strand, within CSW01_04205at 870.899 kb on + strand, within CSW01_04205at 870.907 kb on - strand, within CSW01_04205at 870.912 kb on + strand, within CSW01_04205at 870.930 kb on - strand, within CSW01_04205at 870.991 kb on - strand, within CSW01_04205at 871.023 kb on - strand, within CSW01_04205at 871.083 kb on + strand, within CSW01_04205at 871.083 kb on + strand, within CSW01_04205at 871.091 kb on - strand, within CSW01_04205at 871.108 kb on + strand, within CSW01_04205at 871.141 kb on + strand, within CSW01_04205at 871.149 kb on - strand, within CSW01_04205at 871.149 kb on - strand, within CSW01_04205at 871.149 kb on - strand, within CSW01_04205at 871.149 kb on - strand, within CSW01_04205at 871.173 kb on + strand, within CSW01_04205at 871.232 kb on - strand, within CSW01_04205at 871.269 kb on + strandat 871.316 kb on + strandat 871.347 kb on + strandat 871.391 kb on - strandat 871.536 kb on + strand, within CSW01_04210at 871.544 kb on - strand, within CSW01_04210at 871.554 kb on + strand, within CSW01_04210at 871.572 kb on + strand, within CSW01_04210at 871.580 kb on + strand, within CSW01_04210at 871.619 kb on + strand, within CSW01_04210at 871.664 kb on + strand, within CSW01_04210at 871.717 kb on + strandat 871.717 kb on + strandat 871.717 kb on + strandat 871.725 kb on - strandat 871.725 kb on - strandat 871.915 kb on + strandat 871.923 kb on - strandat 871.936 kb on + strandat 871.936 kb on + strandat 871.936 kb on + strandat 871.944 kb on - strandat 872.007 kb on + strandat 872.015 kb on - strandat 872.015 kb on - strandat 872.015 kb on - strandat 872.016 kb on - strandat 872.107 kb on + strand, within CSW01_04215at 872.130 kb on + strand, within CSW01_04215at 872.138 kb on - strand, within CSW01_04215at 872.138 kb on - strand, within CSW01_04215at 872.196 kb on + strand, within CSW01_04215at 872.253 kb on + strand, within CSW01_04215at 872.280 kb on - strand, within CSW01_04215at 872.289 kb on + strand, within CSW01_04215at 872.293 kb on - strand, within CSW01_04215at 872.312 kb on - strand, within CSW01_04215at 872.373 kb on - strand, within CSW01_04215

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12A
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869,022 - CSW01_04195 0.82 -2.0
869,029 - CSW01_04195 0.83 -0.6
869,039 - CSW01_04195 0.84 -0.9
869,045 - CSW01_04195 0.85 +0.0
869,045 - CSW01_04195 0.85 -0.6
869,069 + CSW01_04195 0.90 +0.6
869,160 + -0.3
869,160 + +0.5
869,166 + -0.4
869,203 + -0.5
869,203 + +0.1
869,205 + -0.9
869,210 - +0.6
869,275 + -0.2
869,283 - +0.0
869,337 - +0.4
870,121 + +0.1
870,121 + +0.6
870,121 + +0.1
870,129 - -0.0
870,130 - +0.9
870,197 + CSW01_04205 0.13 -0.4
870,200 - CSW01_04205 0.13 -1.7
870,243 - CSW01_04205 0.16 -0.1
870,246 - CSW01_04205 0.16 +1.0
870,326 - CSW01_04205 0.22 +0.0
870,327 - CSW01_04205 0.22 -0.1
870,328 - CSW01_04205 0.22 +0.7
870,330 + CSW01_04205 0.23 +0.5
870,364 + CSW01_04205 0.25 +0.2
870,440 + CSW01_04205 0.31 +0.1
870,448 - CSW01_04205 0.31 +0.7
870,448 - CSW01_04205 0.31 -0.5
870,544 - CSW01_04205 0.38 -0.4
870,627 - CSW01_04205 0.44 -0.3
870,629 + CSW01_04205 0.44 +0.9
870,710 - CSW01_04205 0.50 +0.0
870,758 + CSW01_04205 0.54 -0.2
870,873 - CSW01_04205 0.62 +0.1
870,873 - CSW01_04205 0.62 +0.9
870,889 + CSW01_04205 0.63 +0.7
870,899 + CSW01_04205 0.64 +0.3
870,899 + CSW01_04205 0.64 +0.2
870,907 - CSW01_04205 0.65 +0.5
870,912 + CSW01_04205 0.65 +0.0
870,930 - CSW01_04205 0.66 +0.5
870,991 - CSW01_04205 0.71 -0.1
871,023 - CSW01_04205 0.73 -0.8
871,083 + CSW01_04205 0.78 +0.4
871,083 + CSW01_04205 0.78 -0.2
871,091 - CSW01_04205 0.78 +0.5
871,108 + CSW01_04205 0.79 -0.4
871,141 + CSW01_04205 0.82 +0.6
871,149 - CSW01_04205 0.82 +0.7
871,149 - CSW01_04205 0.82 +0.2
871,149 - CSW01_04205 0.82 -0.1
871,149 - CSW01_04205 0.82 -1.9
871,173 + CSW01_04205 0.84 +0.7
871,232 - CSW01_04205 0.88 +0.3
871,269 + +0.3
871,316 + +1.2
871,347 + -0.5
871,391 - +0.4
871,536 + CSW01_04210 0.19 +0.8
871,544 - CSW01_04210 0.23 +0.5
871,554 + CSW01_04210 0.28 +0.3
871,572 + CSW01_04210 0.38 +0.0
871,580 + CSW01_04210 0.43 +0.1
871,619 + CSW01_04210 0.64 +0.7
871,664 + CSW01_04210 0.89 -0.9
871,717 + +1.2
871,717 + +0.0
871,717 + +0.3
871,725 - -0.6
871,725 - -0.1
871,915 + -0.1
871,923 - +0.5
871,936 + -0.1
871,936 + +0.3
871,936 + -0.3
871,944 - -0.3
872,007 + -0.5
872,015 - +0.1
872,015 - +0.2
872,015 - +0.3
872,016 - -1.2
872,107 + CSW01_04215 0.12 +1.2
872,130 + CSW01_04215 0.15 +1.5
872,138 - CSW01_04215 0.16 +0.8
872,138 - CSW01_04215 0.16 +0.8
872,196 + CSW01_04215 0.21 -0.9
872,253 + CSW01_04215 0.27 -0.1
872,280 - CSW01_04215 0.30 -0.2
872,289 + CSW01_04215 0.31 +0.2
872,293 - CSW01_04215 0.31 -0.9
872,312 - CSW01_04215 0.33 -0.5
872,373 - CSW01_04215 0.40 -0.1

Or see this region's nucleotide sequence