Experiment: LB_Anaerobic_120MIN_ZN12A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00680 and CSW01_00685 are separated by 114 nucleotides CSW01_00685 and CSW01_00690 are separated by 74 nucleotides CSW01_00690 and CSW01_00695 are separated by 19 nucleotides
CSW01_00680: CSW01_00680 - Cof-type HAD-IIB family hydrolase, at 128,716 to 129,543
_00680
CSW01_00685: CSW01_00685 - lysophospholipase, at 129,658 to 130,674
_00685
CSW01_00690: CSW01_00690 - homoserine/homoserine lactone efflux protein, at 130,749 to 131,366
_00690
CSW01_00695: CSW01_00695 - EAL domain-containing protein, at 131,386 to 132,612
_00695
Position (kb) 129
130
131 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 128.671 kb on + strand at 128.692 kb on + strand at 128.714 kb on + strand at 128.722 kb on - strand at 128.767 kb on + strand at 128.826 kb on - strand, within CSW01_00680 at 128.903 kb on + strand, within CSW01_00680 at 128.904 kb on + strand, within CSW01_00680 at 128.905 kb on + strand, within CSW01_00680 at 128.912 kb on - strand, within CSW01_00680 at 128.920 kb on - strand, within CSW01_00680 at 128.932 kb on - strand, within CSW01_00680 at 128.932 kb on - strand, within CSW01_00680 at 128.959 kb on + strand, within CSW01_00680 at 128.964 kb on + strand, within CSW01_00680 at 128.964 kb on + strand, within CSW01_00680 at 128.965 kb on - strand, within CSW01_00680 at 128.972 kb on - strand, within CSW01_00680 at 128.979 kb on - strand, within CSW01_00680 at 128.979 kb on - strand, within CSW01_00680 at 129.029 kb on + strand, within CSW01_00680 at 129.029 kb on + strand, within CSW01_00680 at 129.029 kb on + strand, within CSW01_00680 at 129.029 kb on + strand, within CSW01_00680 at 129.037 kb on - strand, within CSW01_00680 at 129.037 kb on - strand, within CSW01_00680 at 129.039 kb on + strand, within CSW01_00680 at 129.124 kb on - strand, within CSW01_00680 at 129.202 kb on + strand, within CSW01_00680 at 129.210 kb on - strand, within CSW01_00680 at 129.301 kb on - strand, within CSW01_00680 at 129.320 kb on - strand, within CSW01_00680 at 129.382 kb on - strand, within CSW01_00680 at 129.417 kb on - strand, within CSW01_00680 at 129.582 kb on + strand at 129.582 kb on + strand at 129.582 kb on + strand at 129.582 kb on + strand at 129.582 kb on + strand at 129.582 kb on + strand at 129.589 kb on - strand at 129.590 kb on - strand at 129.590 kb on - strand at 129.590 kb on - strand at 129.590 kb on - strand at 129.590 kb on - strand at 129.597 kb on - strand at 129.600 kb on - strand at 129.605 kb on - strand at 129.605 kb on - strand at 129.605 kb on - strand at 129.685 kb on - strand at 129.687 kb on + strand at 129.695 kb on - strand at 129.695 kb on - strand at 129.787 kb on + strand, within CSW01_00685 at 129.787 kb on + strand, within CSW01_00685 at 129.787 kb on + strand, within CSW01_00685 at 129.845 kb on + strand, within CSW01_00685 at 129.845 kb on + strand, within CSW01_00685 at 129.922 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.945 kb on + strand, within CSW01_00685 at 129.980 kb on + strand, within CSW01_00685 at 129.992 kb on + strand, within CSW01_00685 at 129.992 kb on + strand, within CSW01_00685 at 129.992 kb on + strand, within CSW01_00685 at 130.000 kb on - strand, within CSW01_00685 at 130.058 kb on + strand, within CSW01_00685 at 130.066 kb on - strand, within CSW01_00685 at 130.066 kb on - strand, within CSW01_00685 at 130.066 kb on - strand, within CSW01_00685 at 130.139 kb on + strand, within CSW01_00685 at 130.139 kb on + strand, within CSW01_00685 at 130.147 kb on - strand, within CSW01_00685 at 130.154 kb on - strand, within CSW01_00685 at 130.177 kb on + strand, within CSW01_00685 at 130.177 kb on + strand, within CSW01_00685 at 130.186 kb on + strand, within CSW01_00685 at 130.187 kb on + strand, within CSW01_00685 at 130.187 kb on + strand, within CSW01_00685 at 130.187 kb on + strand, within CSW01_00685 at 130.187 kb on + strand, within CSW01_00685 at 130.194 kb on - strand, within CSW01_00685 at 130.195 kb on - strand, within CSW01_00685 at 130.195 kb on - strand, within CSW01_00685 at 130.222 kb on + strand, within CSW01_00685 at 130.222 kb on + strand, within CSW01_00685 at 130.222 kb on + strand, within CSW01_00685 at 130.222 kb on + strand, within CSW01_00685 at 130.222 kb on + strand, within CSW01_00685 at 130.222 kb on + strand, within CSW01_00685 at 130.222 kb on + strand, within CSW01_00685 at 130.222 kb on + strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.328 kb on + strand, within CSW01_00685 at 130.347 kb on + strand, within CSW01_00685 at 130.383 kb on - strand, within CSW01_00685 at 130.401 kb on - strand, within CSW01_00685 at 130.475 kb on + strand, within CSW01_00685 at 130.483 kb on - strand, within CSW01_00685 at 130.520 kb on + strand, within CSW01_00685 at 130.612 kb on + strand at 130.620 kb on - strand at 130.669 kb on + strand at 130.677 kb on - strand at 130.677 kb on - strand at 130.677 kb on - strand at 130.710 kb on - strand at 130.711 kb on - strand at 130.713 kb on + strand at 130.721 kb on - strand at 130.819 kb on + strand, within CSW01_00690 at 130.827 kb on - strand, within CSW01_00690 at 130.839 kb on + strand, within CSW01_00690 at 130.839 kb on + strand, within CSW01_00690 at 130.839 kb on + strand, within CSW01_00690 at 130.839 kb on + strand, within CSW01_00690 at 130.840 kb on + strand, within CSW01_00690 at 130.847 kb on - strand, within CSW01_00690 at 130.847 kb on - strand, within CSW01_00690 at 130.852 kb on + strand, within CSW01_00690 at 130.864 kb on + strand, within CSW01_00690 at 130.864 kb on + strand, within CSW01_00690 at 130.864 kb on + strand, within CSW01_00690 at 130.872 kb on - strand, within CSW01_00690 at 130.872 kb on - strand, within CSW01_00690 at 130.921 kb on + strand, within CSW01_00690 at 130.930 kb on - strand, within CSW01_00690 at 131.084 kb on + strand, within CSW01_00690 at 131.084 kb on + strand, within CSW01_00690 at 131.084 kb on + strand, within CSW01_00690 at 131.084 kb on + strand, within CSW01_00690 at 131.089 kb on + strand, within CSW01_00690 at 131.089 kb on + strand, within CSW01_00690 at 131.092 kb on - strand, within CSW01_00690 at 131.092 kb on - strand, within CSW01_00690 at 131.092 kb on - strand, within CSW01_00690 at 131.102 kb on - strand, within CSW01_00690 at 131.103 kb on + strand, within CSW01_00690 at 131.181 kb on + strand, within CSW01_00690 at 131.186 kb on + strand, within CSW01_00690 at 131.186 kb on + strand, within CSW01_00690 at 131.194 kb on - strand, within CSW01_00690 at 131.223 kb on - strand, within CSW01_00690 at 131.234 kb on - strand, within CSW01_00690 at 131.335 kb on + strand at 131.335 kb on + strand at 131.372 kb on + strand at 131.372 kb on + strand at 131.380 kb on - strand at 131.385 kb on + strand at 131.388 kb on + strand at 131.396 kb on - strand at 131.426 kb on - strand at 131.444 kb on + strand at 131.444 kb on + strand at 131.444 kb on + strand at 131.444 kb on + strand at 131.444 kb on + strand at 131.444 kb on + strand at 131.452 kb on - strand at 131.452 kb on - strand at 131.452 kb on - strand at 131.452 kb on - strand at 131.452 kb on - strand at 131.488 kb on + strand at 131.493 kb on + strand at 131.498 kb on - strand at 131.556 kb on + strand, within CSW01_00695 at 131.587 kb on - strand, within CSW01_00695 at 131.603 kb on + strand, within CSW01_00695 at 131.674 kb on - strand, within CSW01_00695
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12A remove 128,671 + -0.9 128,692 + +0.1 128,714 + -0.3 128,722 - -0.3 128,767 + -0.1 128,826 - CSW01_00680 0.13 +0.3 128,903 + CSW01_00680 0.23 -0.1 128,904 + CSW01_00680 0.23 +0.2 128,905 + CSW01_00680 0.23 -0.1 128,912 - CSW01_00680 0.24 +0.5 128,920 - CSW01_00680 0.25 +0.4 128,932 - CSW01_00680 0.26 +0.2 128,932 - CSW01_00680 0.26 -0.4 128,959 + CSW01_00680 0.29 -0.4 128,964 + CSW01_00680 0.30 -2.7 128,964 + CSW01_00680 0.30 +0.1 128,965 - CSW01_00680 0.30 -1.1 128,972 - CSW01_00680 0.31 -0.1 128,979 - CSW01_00680 0.32 +0.3 128,979 - CSW01_00680 0.32 -0.1 129,029 + CSW01_00680 0.38 +0.2 129,029 + CSW01_00680 0.38 +0.5 129,029 + CSW01_00680 0.38 -0.4 129,029 + CSW01_00680 0.38 -0.7 129,037 - CSW01_00680 0.39 +0.3 129,037 - CSW01_00680 0.39 +0.2 129,039 + CSW01_00680 0.39 -0.3 129,124 - CSW01_00680 0.49 -2.8 129,202 + CSW01_00680 0.59 +0.5 129,210 - CSW01_00680 0.60 +0.6 129,301 - CSW01_00680 0.71 -0.3 129,320 - CSW01_00680 0.73 -0.6 129,382 - CSW01_00680 0.80 +1.7 129,417 - CSW01_00680 0.85 -0.3 129,582 + +0.9 129,582 + -0.0 129,582 + +0.5 129,582 + -0.1 129,582 + +0.5 129,582 + +0.5 129,589 - +0.0 129,590 - +0.5 129,590 - +1.1 129,590 - +0.8 129,590 - +0.2 129,590 - -0.2 129,597 - +0.5 129,600 - -0.1 129,605 - +0.2 129,605 - +0.1 129,605 - -0.8 129,685 - +0.6 129,687 + +0.1 129,695 - -0.1 129,695 - -0.2 129,787 + CSW01_00685 0.13 -0.0 129,787 + CSW01_00685 0.13 +0.2 129,787 + CSW01_00685 0.13 -0.7 129,845 + CSW01_00685 0.18 -0.1 129,845 + CSW01_00685 0.18 +0.9 129,922 + CSW01_00685 0.26 +0.0 129,933 + CSW01_00685 0.27 -0.0 129,933 + CSW01_00685 0.27 -0.5 129,933 + CSW01_00685 0.27 +1.8 129,933 + CSW01_00685 0.27 +1.2 129,933 + CSW01_00685 0.27 +1.4 129,933 + CSW01_00685 0.27 -0.1 129,933 + CSW01_00685 0.27 -0.4 129,933 + CSW01_00685 0.27 +0.6 129,933 + CSW01_00685 0.27 +0.6 129,933 + CSW01_00685 0.27 +0.5 129,933 + CSW01_00685 0.27 +0.2 129,933 + CSW01_00685 0.27 -0.1 129,941 - CSW01_00685 0.28 +0.0 129,941 - CSW01_00685 0.28 -0.1 129,941 - CSW01_00685 0.28 +0.8 129,941 - CSW01_00685 0.28 +0.9 129,941 - CSW01_00685 0.28 +0.6 129,941 - CSW01_00685 0.28 -0.9 129,941 - CSW01_00685 0.28 +0.6 129,941 - CSW01_00685 0.28 +0.1 129,941 - CSW01_00685 0.28 +0.4 129,941 - CSW01_00685 0.28 +0.0 129,941 - CSW01_00685 0.28 +0.5 129,941 - CSW01_00685 0.28 -0.2 129,941 - CSW01_00685 0.28 +0.1 129,941 - CSW01_00685 0.28 -0.8 129,941 - CSW01_00685 0.28 -0.6 129,945 + CSW01_00685 0.28 +0.9 129,980 + CSW01_00685 0.32 -0.4 129,992 + CSW01_00685 0.33 +0.2 129,992 + CSW01_00685 0.33 +0.5 129,992 + CSW01_00685 0.33 -0.1 130,000 - CSW01_00685 0.34 -0.0 130,058 + CSW01_00685 0.39 +0.5 130,066 - CSW01_00685 0.40 +0.5 130,066 - CSW01_00685 0.40 -0.8 130,066 - CSW01_00685 0.40 -0.2 130,139 + CSW01_00685 0.47 +0.5 130,139 + CSW01_00685 0.47 +0.2 130,147 - CSW01_00685 0.48 -0.8 130,154 - CSW01_00685 0.49 +0.8 130,177 + CSW01_00685 0.51 -0.5 130,177 + CSW01_00685 0.51 -0.1 130,186 + CSW01_00685 0.52 -0.5 130,187 + CSW01_00685 0.52 +0.4 130,187 + CSW01_00685 0.52 +0.7 130,187 + CSW01_00685 0.52 -0.4 130,187 + CSW01_00685 0.52 -0.2 130,194 - CSW01_00685 0.53 -0.7 130,195 - CSW01_00685 0.53 +0.5 130,195 - CSW01_00685 0.53 +0.6 130,222 + CSW01_00685 0.55 +1.1 130,222 + CSW01_00685 0.55 +0.5 130,222 + CSW01_00685 0.55 -0.4 130,222 + CSW01_00685 0.55 -0.3 130,222 + CSW01_00685 0.55 +0.3 130,222 + CSW01_00685 0.55 -0.2 130,222 + CSW01_00685 0.55 +0.1 130,222 + CSW01_00685 0.55 +0.4 130,230 - CSW01_00685 0.56 +0.8 130,230 - CSW01_00685 0.56 +1.5 130,230 - CSW01_00685 0.56 -0.6 130,230 - CSW01_00685 0.56 -0.0 130,230 - CSW01_00685 0.56 +0.7 130,230 - CSW01_00685 0.56 -0.1 130,230 - CSW01_00685 0.56 +2.5 130,230 - CSW01_00685 0.56 -0.6 130,230 - CSW01_00685 0.56 +0.0 130,230 - CSW01_00685 0.56 -0.2 130,230 - CSW01_00685 0.56 +0.2 130,328 + CSW01_00685 0.66 -0.1 130,347 + CSW01_00685 0.68 -0.6 130,383 - CSW01_00685 0.71 -0.1 130,401 - CSW01_00685 0.73 +0.4 130,475 + CSW01_00685 0.80 +0.1 130,483 - CSW01_00685 0.81 +0.2 130,520 + CSW01_00685 0.85 +0.4 130,612 + +0.6 130,620 - +0.8 130,669 + +0.4 130,677 - +0.5 130,677 - +0.2 130,677 - +0.0 130,710 - -0.5 130,711 - -0.8 130,713 + +0.3 130,721 - +0.3 130,819 + CSW01_00690 0.11 +0.1 130,827 - CSW01_00690 0.13 +1.6 130,839 + CSW01_00690 0.15 +0.2 130,839 + CSW01_00690 0.15 -3.3 130,839 + CSW01_00690 0.15 +0.4 130,839 + CSW01_00690 0.15 -0.0 130,840 + CSW01_00690 0.15 -1.1 130,847 - CSW01_00690 0.16 -0.9 130,847 - CSW01_00690 0.16 +0.3 130,852 + CSW01_00690 0.17 +0.5 130,864 + CSW01_00690 0.19 +0.1 130,864 + CSW01_00690 0.19 +0.2 130,864 + CSW01_00690 0.19 +0.3 130,872 - CSW01_00690 0.20 +0.7 130,872 - CSW01_00690 0.20 +0.6 130,921 + CSW01_00690 0.28 -0.3 130,930 - CSW01_00690 0.29 -1.7 131,084 + CSW01_00690 0.54 -0.0 131,084 + CSW01_00690 0.54 +0.7 131,084 + CSW01_00690 0.54 +1.4 131,084 + CSW01_00690 0.54 -1.7 131,089 + CSW01_00690 0.55 -1.7 131,089 + CSW01_00690 0.55 +0.0 131,092 - CSW01_00690 0.56 +0.8 131,092 - CSW01_00690 0.56 +0.1 131,092 - CSW01_00690 0.56 -0.5 131,102 - CSW01_00690 0.57 -0.1 131,103 + CSW01_00690 0.57 -0.1 131,181 + CSW01_00690 0.70 +0.6 131,186 + CSW01_00690 0.71 -1.5 131,186 + CSW01_00690 0.71 +1.2 131,194 - CSW01_00690 0.72 +0.0 131,223 - CSW01_00690 0.77 -0.2 131,234 - CSW01_00690 0.78 -0.5 131,335 + -0.6 131,335 + +0.5 131,372 + +0.0 131,372 + +0.1 131,380 - +0.5 131,385 + -0.6 131,388 + -0.5 131,396 - +0.4 131,426 - -1.0 131,444 + -0.2 131,444 + +0.9 131,444 + -0.5 131,444 + +1.3 131,444 + -0.6 131,444 + +0.0 131,452 - -0.3 131,452 - -0.1 131,452 - +0.1 131,452 - -0.8 131,452 - -0.8 131,488 + -0.3 131,493 + +1.5 131,498 - -0.3 131,556 + CSW01_00695 0.14 +0.7 131,587 - CSW01_00695 0.16 +0.6 131,603 + CSW01_00695 0.18 +0.0 131,674 - CSW01_00695 0.23 -0.2
Or see this region's nucleotide sequence